niwrap-freesurfer 0.6.1__py3-none-any.whl → 0.6.2__py3-none-any.whl

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Files changed (700) hide show
  1. niwrap_freesurfer/freesurfer/analyzeto4dfp.py +1 -1
  2. niwrap_freesurfer/freesurfer/anatomi_cuts_utils.py +1 -1
  3. niwrap_freesurfer/freesurfer/annot2std.py +1 -1
  4. niwrap_freesurfer/freesurfer/ants_denoise_image_fs.py +1 -1
  5. niwrap_freesurfer/freesurfer/ants_n4_bias_field_correction_fs.py +1 -1
  6. niwrap_freesurfer/freesurfer/aparc2feat.py +1 -1
  7. niwrap_freesurfer/freesurfer/aparc_stats_aseg.py +1 -1
  8. niwrap_freesurfer/freesurfer/aparcstats2table.py +1 -1
  9. niwrap_freesurfer/freesurfer/aparcstatsdiff.py +1 -1
  10. niwrap_freesurfer/freesurfer/apas2aseg.py +1 -1
  11. niwrap_freesurfer/freesurfer/apply_morph.py +1 -1
  12. niwrap_freesurfer/freesurfer/aseg2feat.py +1 -1
  13. niwrap_freesurfer/freesurfer/asegstats2table.py +1 -1
  14. niwrap_freesurfer/freesurfer/asegstatsdiff.py +1 -1
  15. niwrap_freesurfer/freesurfer/avi2talxfm.py +1 -1
  16. niwrap_freesurfer/freesurfer/bblabel.py +1 -1
  17. niwrap_freesurfer/freesurfer/bbmask.py +1 -1
  18. niwrap_freesurfer/freesurfer/bbregister.py +1 -1
  19. niwrap_freesurfer/freesurfer/bedpostx_mgh.py +1 -1
  20. niwrap_freesurfer/freesurfer/beta2sxa.py +1 -1
  21. niwrap_freesurfer/freesurfer/biasfield.py +1 -1
  22. niwrap_freesurfer/freesurfer/bmedits2surf.py +1 -1
  23. niwrap_freesurfer/freesurfer/brec.py +1 -1
  24. niwrap_freesurfer/freesurfer/browse_minc_header_tcl.py +1 -1
  25. niwrap_freesurfer/freesurfer/bugr.py +1 -1
  26. niwrap_freesurfer/freesurfer/build_desikan_killiany_gcs_csh.py +1 -1
  27. niwrap_freesurfer/freesurfer/cblumwmgyri.py +1 -1
  28. niwrap_freesurfer/freesurfer/check_mcr_sh.py +1 -1
  29. niwrap_freesurfer/freesurfer/check_recons_sh.py +1 -1
  30. niwrap_freesurfer/freesurfer/check_subject.py +1 -1
  31. niwrap_freesurfer/freesurfer/compute_interrater_variability_csh.py +1 -1
  32. niwrap_freesurfer/freesurfer/compute_label_volumes_csh.py +2 -2
  33. niwrap_freesurfer/freesurfer/compute_vox2vox.py +1 -1
  34. niwrap_freesurfer/freesurfer/conf2hires.py +1 -1
  35. niwrap_freesurfer/freesurfer/connected_components.py +1 -1
  36. niwrap_freesurfer/freesurfer/cor_to_minc.py +1 -1
  37. niwrap_freesurfer/freesurfer/cp_dicom.py +1 -1
  38. niwrap_freesurfer/freesurfer/create_morph.py +1 -1
  39. niwrap_freesurfer/freesurfer/csvprint.py +1 -1
  40. niwrap_freesurfer/freesurfer/dcmdir_info_mgh.py +1 -1
  41. niwrap_freesurfer/freesurfer/dcmdjpeg_fs.py +1 -1
  42. niwrap_freesurfer/freesurfer/dcmdrle_fs.py +1 -1
  43. niwrap_freesurfer/freesurfer/dcmsplit.py +1 -1
  44. niwrap_freesurfer/freesurfer/dcmunpack.py +1 -1
  45. niwrap_freesurfer/freesurfer/deface_subject.py +1 -1
  46. niwrap_freesurfer/freesurfer/defect2seg.py +1 -1
  47. niwrap_freesurfer/freesurfer/defect_seg.py +1 -1
  48. niwrap_freesurfer/freesurfer/dicom_rename.py +1 -1
  49. niwrap_freesurfer/freesurfer/diffusion_utils.py +1 -1
  50. niwrap_freesurfer/freesurfer/dmri_ac_sh.py +1 -1
  51. niwrap_freesurfer/freesurfer/dmri_anatomi_cuts.py +1 -1
  52. niwrap_freesurfer/freesurfer/dmri_bset.py +1 -1
  53. niwrap_freesurfer/freesurfer/dmri_colored_fa.py +1 -1
  54. niwrap_freesurfer/freesurfer/dmri_extract_surface_measurements.py +1 -1
  55. niwrap_freesurfer/freesurfer/dmri_forrest.py +1 -1
  56. niwrap_freesurfer/freesurfer/dmri_group.py +1 -1
  57. niwrap_freesurfer/freesurfer/dmri_group_by_endpoints.py +1 -1
  58. niwrap_freesurfer/freesurfer/dmri_match.py +1 -1
  59. niwrap_freesurfer/freesurfer/dmri_mergepaths.py +1 -1
  60. niwrap_freesurfer/freesurfer/dmri_motion.py +1 -1
  61. niwrap_freesurfer/freesurfer/dmri_neighboring_regions.py +1 -1
  62. niwrap_freesurfer/freesurfer/dmri_paths.py +1 -1
  63. niwrap_freesurfer/freesurfer/dmri_pathstats.py +1 -1
  64. niwrap_freesurfer/freesurfer/dmri_project_end_points.py +1 -1
  65. niwrap_freesurfer/freesurfer/dmri_save_histograms.py +1 -1
  66. niwrap_freesurfer/freesurfer/dmri_spline.py +1 -1
  67. niwrap_freesurfer/freesurfer/dmri_stats_ac.py +1 -1
  68. niwrap_freesurfer/freesurfer/dmri_train.py +1 -1
  69. niwrap_freesurfer/freesurfer/dmri_trk2trk.py +1 -1
  70. niwrap_freesurfer/freesurfer/dmri_violin_plots.py +1 -1
  71. niwrap_freesurfer/freesurfer/dmri_vox2vox.py +1 -1
  72. niwrap_freesurfer/freesurfer/dt_recon.py +1 -1
  73. niwrap_freesurfer/freesurfer/export_gcam.py +1 -1
  74. niwrap_freesurfer/freesurfer/extract_seg_waveform.py +1 -1
  75. niwrap_freesurfer/freesurfer/exvivo_hemi_proc.py +1 -1
  76. niwrap_freesurfer/freesurfer/feat2segstats.py +1 -1
  77. niwrap_freesurfer/freesurfer/feat2surf.py +1 -1
  78. niwrap_freesurfer/freesurfer/fiducials_calibration.py +1 -1
  79. niwrap_freesurfer/freesurfer/fiducials_correction.py +1 -1
  80. niwrap_freesurfer/freesurfer/fix_subject.py +1 -1
  81. niwrap_freesurfer/freesurfer/fix_subject_corrected.py +1 -1
  82. niwrap_freesurfer/freesurfer/fix_subject_corrected_rh.py +1 -1
  83. niwrap_freesurfer/freesurfer/fix_subject_rh.py +1 -1
  84. niwrap_freesurfer/freesurfer/fixup_mni_paths.py +1 -1
  85. niwrap_freesurfer/freesurfer/flip_4dfp.py +1 -1
  86. niwrap_freesurfer/freesurfer/flirt_newdefault_20080811_sch.py +1 -1
  87. niwrap_freesurfer/freesurfer/fname2ext.py +1 -1
  88. niwrap_freesurfer/freesurfer/fname2stem.py +1 -1
  89. niwrap_freesurfer/freesurfer/freeview.py +1 -1
  90. niwrap_freesurfer/freesurfer/fs_check_version.py +1 -1
  91. niwrap_freesurfer/freesurfer/fs_install_mcr.py +1 -1
  92. niwrap_freesurfer/freesurfer/fs_lib_check.py +1 -1
  93. niwrap_freesurfer/freesurfer/fs_print_help.py +1 -1
  94. niwrap_freesurfer/freesurfer/fs_run_from_mcr.py +1 -1
  95. niwrap_freesurfer/freesurfer/fs_spmreg_glnxa64.py +1 -1
  96. niwrap_freesurfer/freesurfer/fs_temp_dir.py +1 -1
  97. niwrap_freesurfer/freesurfer/fs_temp_file.py +1 -1
  98. niwrap_freesurfer/freesurfer/fs_time.py +1 -1
  99. niwrap_freesurfer/freesurfer/fs_tutorial_data.py +1 -1
  100. niwrap_freesurfer/freesurfer/fs_update.py +1 -1
  101. niwrap_freesurfer/freesurfer/fscalc.py +1 -1
  102. niwrap_freesurfer/freesurfer/fsdcmdecompress.py +1 -1
  103. niwrap_freesurfer/freesurfer/fsl_5_0_2_xyztrans_sch.py +1 -1
  104. niwrap_freesurfer/freesurfer/fsl_label2voxel.py +1 -1
  105. niwrap_freesurfer/freesurfer/fsl_rigid_register.py +1 -1
  106. niwrap_freesurfer/freesurfer/fsl_sub_mgh.py +1 -1
  107. niwrap_freesurfer/freesurfer/fslregister.py +1 -1
  108. niwrap_freesurfer/freesurfer/fspalm.py +1 -1
  109. niwrap_freesurfer/freesurfer/fsr_coreg.py +1 -1
  110. niwrap_freesurfer/freesurfer/fsr_getxopts.py +1 -1
  111. niwrap_freesurfer/freesurfer/fsr_import.py +1 -1
  112. niwrap_freesurfer/freesurfer/fsrealpath.py +1 -1
  113. niwrap_freesurfer/freesurfer/fsvglrun.py +1 -1
  114. niwrap_freesurfer/freesurfer/fvcompare.py +1 -1
  115. niwrap_freesurfer/freesurfer/gauss_4dfp.py +1 -1
  116. niwrap_freesurfer/freesurfer/gca_apply.py +1 -1
  117. niwrap_freesurfer/freesurfer/gcainit.py +1 -1
  118. niwrap_freesurfer/freesurfer/gcaprepone.py +1 -1
  119. niwrap_freesurfer/freesurfer/gcatrain.py +1 -1
  120. niwrap_freesurfer/freesurfer/gcatrainskull.py +1 -1
  121. niwrap_freesurfer/freesurfer/gdcmconv_fs.py +1 -1
  122. niwrap_freesurfer/freesurfer/gems_compute_atlas_probs.py +1 -1
  123. niwrap_freesurfer/freesurfer/get_label_thickness.py +1 -1
  124. niwrap_freesurfer/freesurfer/getfullpath.py +1 -1
  125. niwrap_freesurfer/freesurfer/grad_unwarp.py +1 -1
  126. niwrap_freesurfer/freesurfer/groupstats.py +1 -1
  127. niwrap_freesurfer/freesurfer/groupstatsdiff.py +1 -1
  128. niwrap_freesurfer/freesurfer/gtmseg.py +1 -1
  129. niwrap_freesurfer/freesurfer/hiam_make_surfaces.py +1 -1
  130. niwrap_freesurfer/freesurfer/hiam_make_template.py +1 -1
  131. niwrap_freesurfer/freesurfer/hiam_register.py +1 -1
  132. niwrap_freesurfer/freesurfer/histo_compute_joint_density.py +1 -1
  133. niwrap_freesurfer/freesurfer/histo_register_block.py +1 -1
  134. niwrap_freesurfer/freesurfer/histo_synthesize.py +1 -1
  135. niwrap_freesurfer/freesurfer/ico_supersample.py +1 -1
  136. niwrap_freesurfer/freesurfer/ifh2hdr.py +1 -1
  137. niwrap_freesurfer/freesurfer/imgreg_4dfp.py +1 -1
  138. niwrap_freesurfer/freesurfer/inflate_subject.py +1 -1
  139. niwrap_freesurfer/freesurfer/inflate_subject3.py +1 -1
  140. niwrap_freesurfer/freesurfer/inflate_subject_lh.py +1 -1
  141. niwrap_freesurfer/freesurfer/inflate_subject_new.py +1 -1
  142. niwrap_freesurfer/freesurfer/inflate_subject_new_lh.py +1 -1
  143. niwrap_freesurfer/freesurfer/inflate_subject_new_rh.py +1 -1
  144. niwrap_freesurfer/freesurfer/inflate_subject_rh.py +1 -1
  145. niwrap_freesurfer/freesurfer/inflate_subject_sc.py +1 -1
  146. niwrap_freesurfer/freesurfer/irepifitvol.py +1 -1
  147. niwrap_freesurfer/freesurfer/irepifitvol_glnx64.py +1 -1
  148. niwrap_freesurfer/freesurfer/is_lta.py +1 -1
  149. niwrap_freesurfer/freesurfer/is_surface.py +1 -1
  150. niwrap_freesurfer/freesurfer/isanalyze.py +1 -1
  151. niwrap_freesurfer/freesurfer/isnifti.py +1 -1
  152. niwrap_freesurfer/freesurfer/isolate_labels_csh.py +1 -1
  153. niwrap_freesurfer/freesurfer/isolate_labels_keeporigval_csh.py +1 -1
  154. niwrap_freesurfer/freesurfer/jkgcatrain.py +1 -1
  155. niwrap_freesurfer/freesurfer/label2flat.py +1 -1
  156. niwrap_freesurfer/freesurfer/label2patch.py +1 -1
  157. niwrap_freesurfer/freesurfer/label_elderly_subject.py +1 -1
  158. niwrap_freesurfer/freesurfer/label_subject.py +1 -1
  159. niwrap_freesurfer/freesurfer/label_subject_flash.py +1 -1
  160. niwrap_freesurfer/freesurfer/label_subject_mixed.py +1 -1
  161. niwrap_freesurfer/freesurfer/labels_disjoint.py +1 -1
  162. niwrap_freesurfer/freesurfer/labels_intersect.py +1 -1
  163. niwrap_freesurfer/freesurfer/labels_union.py +1 -1
  164. niwrap_freesurfer/freesurfer/list_otl_labels.py +1 -1
  165. niwrap_freesurfer/freesurfer/listsubj.py +1 -1
  166. niwrap_freesurfer/freesurfer/long_create_base_sigma.py +1 -1
  167. niwrap_freesurfer/freesurfer/long_create_orig.py +1 -1
  168. niwrap_freesurfer/freesurfer/long_mris_slopes.py +1 -1
  169. niwrap_freesurfer/freesurfer/long_qdec_table.py +1 -1
  170. niwrap_freesurfer/freesurfer/long_stats_combine.py +1 -1
  171. niwrap_freesurfer/freesurfer/long_stats_slopes.py +1 -1
  172. niwrap_freesurfer/freesurfer/long_stats_tps.py +1 -1
  173. niwrap_freesurfer/freesurfer/long_submit_jobs.py +1 -1
  174. niwrap_freesurfer/freesurfer/long_submit_postproc.py +1 -1
  175. niwrap_freesurfer/freesurfer/longmc.py +1 -1
  176. niwrap_freesurfer/freesurfer/lpcregister.py +1 -1
  177. niwrap_freesurfer/freesurfer/lta_convert.py +1 -1
  178. niwrap_freesurfer/freesurfer/lta_diff.py +1 -1
  179. niwrap_freesurfer/freesurfer/make_average_subcort.py +1 -1
  180. niwrap_freesurfer/freesurfer/make_average_subject.py +1 -1
  181. niwrap_freesurfer/freesurfer/make_average_surface.py +1 -1
  182. niwrap_freesurfer/freesurfer/make_average_volume.py +1 -1
  183. niwrap_freesurfer/freesurfer/make_cortex_label.py +1 -1
  184. niwrap_freesurfer/freesurfer/make_exvivo_filled.py +1 -1
  185. niwrap_freesurfer/freesurfer/make_folding_atlas.py +1 -1
  186. niwrap_freesurfer/freesurfer/make_hemi_mask.py +1 -1
  187. niwrap_freesurfer/freesurfer/make_segvol_table.py +1 -1
  188. niwrap_freesurfer/freesurfer/make_symmetric.py +1 -1
  189. niwrap_freesurfer/freesurfer/make_upright.py +1 -1
  190. niwrap_freesurfer/freesurfer/makevol.py +1 -1
  191. niwrap_freesurfer/freesurfer/map_all_labels.py +1 -1
  192. niwrap_freesurfer/freesurfer/map_all_labels_lh.py +1 -1
  193. niwrap_freesurfer/freesurfer/map_central_sulcus.py +1 -1
  194. niwrap_freesurfer/freesurfer/map_to_base.py +1 -1
  195. niwrap_freesurfer/freesurfer/meanval.py +1 -1
  196. niwrap_freesurfer/freesurfer/merge_stats_tables.py +1 -1
  197. niwrap_freesurfer/freesurfer/mergeseg.py +1 -1
  198. niwrap_freesurfer/freesurfer/mideface.py +1 -1
  199. niwrap_freesurfer/freesurfer/minc2seqinfo.py +1 -1
  200. niwrap_freesurfer/freesurfer/mkheadsurf.py +1 -1
  201. niwrap_freesurfer/freesurfer/mkima_index_tcl.py +1 -1
  202. niwrap_freesurfer/freesurfer/mkmnc_index_tcl.py +1 -1
  203. niwrap_freesurfer/freesurfer/mksubjdirs.py +1 -1
  204. niwrap_freesurfer/freesurfer/mksurfatlas.py +1 -1
  205. niwrap_freesurfer/freesurfer/mkxsubjreg.py +1 -1
  206. niwrap_freesurfer/freesurfer/mmppsp.py +1 -1
  207. niwrap_freesurfer/freesurfer/mni152reg.py +1 -1
  208. niwrap_freesurfer/freesurfer/morph_only_subject.py +1 -1
  209. niwrap_freesurfer/freesurfer/morph_only_subject_lh.py +1 -1
  210. niwrap_freesurfer/freesurfer/morph_only_subject_rh.py +1 -1
  211. niwrap_freesurfer/freesurfer/morph_rgb_lh.py +1 -1
  212. niwrap_freesurfer/freesurfer/morph_rgb_rh.py +1 -1
  213. niwrap_freesurfer/freesurfer/morph_subject.py +1 -1
  214. niwrap_freesurfer/freesurfer/morph_subject_lh.py +1 -1
  215. niwrap_freesurfer/freesurfer/morph_subject_rh.py +1 -1
  216. niwrap_freesurfer/freesurfer/morph_tables_lh.py +1 -1
  217. niwrap_freesurfer/freesurfer/morph_tables_rh.py +1 -1
  218. niwrap_freesurfer/freesurfer/mpr2mni305.py +1 -1
  219. niwrap_freesurfer/freesurfer/mri_3d_photo_recon.py +1 -1
  220. niwrap_freesurfer/freesurfer/mri_add_new_tp.py +1 -1
  221. niwrap_freesurfer/freesurfer/mri_add_xform_to_header.py +1 -1
  222. niwrap_freesurfer/freesurfer/mri_align_long_csh.py +1 -1
  223. niwrap_freesurfer/freesurfer/mri_and.py +1 -1
  224. niwrap_freesurfer/freesurfer/mri_annotation2label.py +1 -1
  225. niwrap_freesurfer/freesurfer/mri_aparc2aseg.py +1 -1
  226. niwrap_freesurfer/freesurfer/mri_aparc2wmseg.py +1 -1
  227. niwrap_freesurfer/freesurfer/mri_apply_bias.py +1 -1
  228. niwrap_freesurfer/freesurfer/mri_average.py +1 -1
  229. niwrap_freesurfer/freesurfer/mri_binarize.py +1 -1
  230. niwrap_freesurfer/freesurfer/mri_brain_volume.py +1 -1
  231. niwrap_freesurfer/freesurfer/mri_brainvol_stats.py +1 -1
  232. niwrap_freesurfer/freesurfer/mri_ca_label.py +1 -1
  233. niwrap_freesurfer/freesurfer/mri_ca_normalize.py +1 -1
  234. niwrap_freesurfer/freesurfer/mri_ca_register.py +1 -1
  235. niwrap_freesurfer/freesurfer/mri_ca_tissue_parms.py +1 -1
  236. niwrap_freesurfer/freesurfer/mri_ca_train.py +1 -1
  237. niwrap_freesurfer/freesurfer/mri_cal_renormalize_gca.py +1 -1
  238. niwrap_freesurfer/freesurfer/mri_cc.py +1 -1
  239. niwrap_freesurfer/freesurfer/mri_cnr.py +1 -1
  240. niwrap_freesurfer/freesurfer/mri_compile_edits.py +1 -1
  241. niwrap_freesurfer/freesurfer/mri_compute_bias.py +1 -1
  242. niwrap_freesurfer/freesurfer/mri_compute_change_map.py +1 -1
  243. niwrap_freesurfer/freesurfer/mri_compute_distances.py +1 -1
  244. niwrap_freesurfer/freesurfer/mri_compute_layer_fractions.py +1 -1
  245. niwrap_freesurfer/freesurfer/mri_compute_overlap.py +1 -1
  246. niwrap_freesurfer/freesurfer/mri_compute_seg_overlap.py +1 -1
  247. niwrap_freesurfer/freesurfer/mri_compute_volume_fractions.py +1 -1
  248. niwrap_freesurfer/freesurfer/mri_compute_volume_intensities.py +1 -1
  249. niwrap_freesurfer/freesurfer/mri_concat.py +1 -1
  250. niwrap_freesurfer/freesurfer/mri_concatenate_gcam.py +1 -1
  251. niwrap_freesurfer/freesurfer/mri_concatenate_lta.py +1 -1
  252. niwrap_freesurfer/freesurfer/mri_convert.py +1 -1
  253. niwrap_freesurfer/freesurfer/mri_copy_params.py +1 -1
  254. niwrap_freesurfer/freesurfer/mri_copy_values.py +1 -1
  255. niwrap_freesurfer/freesurfer/mri_cor2label.py +1 -1
  256. niwrap_freesurfer/freesurfer/mri_coreg.py +1 -1
  257. niwrap_freesurfer/freesurfer/mri_correct_segmentations.py +1 -1
  258. niwrap_freesurfer/freesurfer/mri_create_t2combined.py +1 -1
  259. niwrap_freesurfer/freesurfer/mri_create_tests.py +1 -1
  260. niwrap_freesurfer/freesurfer/mri_cvs_check.py +1 -1
  261. niwrap_freesurfer/freesurfer/mri_cvs_data_copy.py +1 -1
  262. niwrap_freesurfer/freesurfer/mri_cvs_register.py +1 -1
  263. niwrap_freesurfer/freesurfer/mri_dct_align.py +1 -1
  264. niwrap_freesurfer/freesurfer/mri_dct_align_binary.py +1 -1
  265. niwrap_freesurfer/freesurfer/mri_deface.py +1 -1
  266. niwrap_freesurfer/freesurfer/mri_defacer.py +1 -1
  267. niwrap_freesurfer/freesurfer/mri_diff.py +1 -1
  268. niwrap_freesurfer/freesurfer/mri_dist_surf_label.py +1 -1
  269. niwrap_freesurfer/freesurfer/mri_distance_transform.py +1 -1
  270. niwrap_freesurfer/freesurfer/mri_easyreg.py +1 -1
  271. niwrap_freesurfer/freesurfer/mri_easywarp.py +1 -1
  272. niwrap_freesurfer/freesurfer/mri_edit_segmentation.py +1 -1
  273. niwrap_freesurfer/freesurfer/mri_edit_segmentation_with_surfaces.py +1 -1
  274. niwrap_freesurfer/freesurfer/mri_edit_wm_with_aseg.py +1 -1
  275. niwrap_freesurfer/freesurfer/mri_em_register.py +1 -1
  276. niwrap_freesurfer/freesurfer/mri_entowm_seg.py +1 -1
  277. niwrap_freesurfer/freesurfer/mri_evaluate_morph.py +1 -1
  278. niwrap_freesurfer/freesurfer/mri_extract.py +1 -1
  279. niwrap_freesurfer/freesurfer/mri_extract_fcd_features.py +1 -1
  280. niwrap_freesurfer/freesurfer/mri_extract_label.py +1 -1
  281. niwrap_freesurfer/freesurfer/mri_extract_largest_cc.py +1 -1
  282. niwrap_freesurfer/freesurfer/mri_exvivo_norm.py +1 -1
  283. niwrap_freesurfer/freesurfer/mri_exvivo_strip.py +1 -1
  284. niwrap_freesurfer/freesurfer/mri_fdr.py +1 -1
  285. niwrap_freesurfer/freesurfer/mri_fieldsign.py +1 -1
  286. niwrap_freesurfer/freesurfer/mri_fill.py +1 -1
  287. niwrap_freesurfer/freesurfer/mri_fit_bias.py +1 -1
  288. niwrap_freesurfer/freesurfer/mri_fslmat_to_lta.py +1 -1
  289. niwrap_freesurfer/freesurfer/mri_func2sph.py +1 -1
  290. niwrap_freesurfer/freesurfer/mri_funcvits.py +1 -1
  291. niwrap_freesurfer/freesurfer/mri_fuse_intensity_images.py +1 -1
  292. niwrap_freesurfer/freesurfer/mri_fuse_segmentations.py +1 -1
  293. niwrap_freesurfer/freesurfer/mri_fwhm.py +1 -1
  294. niwrap_freesurfer/freesurfer/mri_gca_ambiguous.py +1 -1
  295. niwrap_freesurfer/freesurfer/mri_gcab_train.py +1 -1
  296. niwrap_freesurfer/freesurfer/mri_gcut.py +1 -1
  297. niwrap_freesurfer/freesurfer/mri_gdfglm.py +1 -1
  298. niwrap_freesurfer/freesurfer/mri_glmfit.py +1 -1
  299. niwrap_freesurfer/freesurfer/mri_glmfit_sim.py +1 -1
  300. niwrap_freesurfer/freesurfer/mri_gradient_info.py +1 -1
  301. niwrap_freesurfer/freesurfer/mri_gradunwarp.py +1 -1
  302. niwrap_freesurfer/freesurfer/mri_gtmpvc.py +1 -1
  303. niwrap_freesurfer/freesurfer/mri_gtmseg.py +1 -1
  304. niwrap_freesurfer/freesurfer/mri_hausdorff_dist.py +1 -1
  305. niwrap_freesurfer/freesurfer/mri_head.py +1 -1
  306. niwrap_freesurfer/freesurfer/mri_hires_register.py +1 -1
  307. niwrap_freesurfer/freesurfer/mri_histo_eq.py +1 -1
  308. niwrap_freesurfer/freesurfer/mri_info.py +1 -1
  309. niwrap_freesurfer/freesurfer/mri_jacobian.py +1 -1
  310. niwrap_freesurfer/freesurfer/mri_joint_density.py +1 -1
  311. niwrap_freesurfer/freesurfer/mri_label2label.py +1 -1
  312. niwrap_freesurfer/freesurfer/mri_label2vol.py +1 -1
  313. niwrap_freesurfer/freesurfer/mri_label_histo.py +1 -1
  314. niwrap_freesurfer/freesurfer/mri_label_vals.py +1 -1
  315. niwrap_freesurfer/freesurfer/mri_label_volume.py +1 -1
  316. niwrap_freesurfer/freesurfer/mri_linear_align.py +1 -1
  317. niwrap_freesurfer/freesurfer/mri_linear_align_binary.py +1 -1
  318. niwrap_freesurfer/freesurfer/mri_linear_register.py +1 -1
  319. niwrap_freesurfer/freesurfer/mri_log_likelihood.py +1 -1
  320. niwrap_freesurfer/freesurfer/mri_long_normalize.py +1 -1
  321. niwrap_freesurfer/freesurfer/mri_make_bem_surfaces.py +1 -1
  322. niwrap_freesurfer/freesurfer/mri_make_uchar.py +1 -1
  323. niwrap_freesurfer/freesurfer/mri_map_cpdat.py +1 -1
  324. niwrap_freesurfer/freesurfer/mri_maps2csd.py +1 -1
  325. niwrap_freesurfer/freesurfer/mri_mark_temporal_lobe.py +1 -1
  326. niwrap_freesurfer/freesurfer/mri_mask.py +1 -1
  327. niwrap_freesurfer/freesurfer/mri_matrix_multiply.py +1 -1
  328. niwrap_freesurfer/freesurfer/mri_mc.py +1 -1
  329. niwrap_freesurfer/freesurfer/mri_mcsim.py +1 -1
  330. niwrap_freesurfer/freesurfer/mri_mergelabels.py +1 -1
  331. niwrap_freesurfer/freesurfer/mri_mi.py +1 -1
  332. niwrap_freesurfer/freesurfer/mri_modify.py +1 -1
  333. niwrap_freesurfer/freesurfer/mri_morphology.py +1 -1
  334. niwrap_freesurfer/freesurfer/mri_motion_correct.py +1 -1
  335. niwrap_freesurfer/freesurfer/mri_motion_correct2.py +1 -1
  336. niwrap_freesurfer/freesurfer/mri_ms_fitparms.py +1 -1
  337. niwrap_freesurfer/freesurfer/mri_nl_align.py +1 -1
  338. niwrap_freesurfer/freesurfer/mri_nl_align_binary.py +1 -1
  339. niwrap_freesurfer/freesurfer/mri_nlfilter.py +1 -1
  340. niwrap_freesurfer/freesurfer/mri_normalize.py +1 -1
  341. niwrap_freesurfer/freesurfer/mri_normalize_tp2.py +1 -1
  342. niwrap_freesurfer/freesurfer/mri_nu_correct_mni.py +1 -1
  343. niwrap_freesurfer/freesurfer/mri_or.py +1 -1
  344. niwrap_freesurfer/freesurfer/mri_paint.py +1 -1
  345. niwrap_freesurfer/freesurfer/mri_parse_sdcmdir.py +1 -1
  346. niwrap_freesurfer/freesurfer/mri_path2label.py +1 -1
  347. niwrap_freesurfer/freesurfer/mri_polv.py +1 -1
  348. niwrap_freesurfer/freesurfer/mri_pretess.py +1 -1
  349. niwrap_freesurfer/freesurfer/mri_probe_ima.py +1 -1
  350. niwrap_freesurfer/freesurfer/mri_probedicom.py +1 -1
  351. niwrap_freesurfer/freesurfer/mri_reduce.py +1 -1
  352. niwrap_freesurfer/freesurfer/mri_refine_seg.py +1 -1
  353. niwrap_freesurfer/freesurfer/mri_relabel_hypointensities.py +1 -1
  354. niwrap_freesurfer/freesurfer/mri_relabel_nonwm_hypos.py +1 -1
  355. niwrap_freesurfer/freesurfer/mri_remove_neck.py +1 -1
  356. niwrap_freesurfer/freesurfer/mri_reorient_lr_csh.py +1 -1
  357. niwrap_freesurfer/freesurfer/mri_rf_label.py +1 -1
  358. niwrap_freesurfer/freesurfer/mri_rf_long_label.py +1 -1
  359. niwrap_freesurfer/freesurfer/mri_rf_long_train.py +1 -1
  360. niwrap_freesurfer/freesurfer/mri_rf_train.py +1 -1
  361. niwrap_freesurfer/freesurfer/mri_ribbon.py +1 -1
  362. niwrap_freesurfer/freesurfer/mri_rigid_register.py +1 -1
  363. niwrap_freesurfer/freesurfer/mri_robust_register.py +1 -1
  364. niwrap_freesurfer/freesurfer/mri_robust_template.py +1 -1
  365. niwrap_freesurfer/freesurfer/mri_sbbr.py +1 -1
  366. niwrap_freesurfer/freesurfer/mri_sclimbic_seg.py +1 -1
  367. niwrap_freesurfer/freesurfer/mri_seg_diff.py +1 -1
  368. niwrap_freesurfer/freesurfer/mri_seg_overlap.py +1 -1
  369. niwrap_freesurfer/freesurfer/mri_segcentroids.py +1 -1
  370. niwrap_freesurfer/freesurfer/mri_seghead.py +1 -1
  371. niwrap_freesurfer/freesurfer/mri_segment.py +1 -1
  372. niwrap_freesurfer/freesurfer/mri_segment_hypothalamic_subunits.py +1 -1
  373. niwrap_freesurfer/freesurfer/mri_segment_thalamic_nuclei_dti_cnn.py +1 -1
  374. niwrap_freesurfer/freesurfer/mri_segreg.py +1 -1
  375. niwrap_freesurfer/freesurfer/mri_segstats.py +1 -1
  376. niwrap_freesurfer/freesurfer/mri_sph2surf.py +1 -1
  377. niwrap_freesurfer/freesurfer/mri_stats2seg.py +1 -1
  378. niwrap_freesurfer/freesurfer/mri_stopmask.py +1 -1
  379. niwrap_freesurfer/freesurfer/mri_strip_nonwhite.py +1 -1
  380. niwrap_freesurfer/freesurfer/mri_strip_subject_info.py +1 -1
  381. niwrap_freesurfer/freesurfer/mri_surf2surf.py +1 -1
  382. niwrap_freesurfer/freesurfer/mri_surf2vol.py +1 -1
  383. niwrap_freesurfer/freesurfer/mri_surf2volseg.py +1 -1
  384. niwrap_freesurfer/freesurfer/mri_surfacemask.py +1 -1
  385. niwrap_freesurfer/freesurfer/mri_surfcluster.py +1 -1
  386. niwrap_freesurfer/freesurfer/mri_synthesize.py +1 -1
  387. niwrap_freesurfer/freesurfer/mri_synthmorph.py +1 -1
  388. niwrap_freesurfer/freesurfer/mri_synthseg.py +1 -1
  389. niwrap_freesurfer/freesurfer/mri_synthsr.py +1 -1
  390. niwrap_freesurfer/freesurfer/mri_synthsr_hyperfine.py +1 -1
  391. niwrap_freesurfer/freesurfer/mri_synthstrip.py +1 -1
  392. niwrap_freesurfer/freesurfer/mri_tessellate.py +1 -1
  393. niwrap_freesurfer/freesurfer/mri_threshold.py +1 -1
  394. niwrap_freesurfer/freesurfer/mri_topologycorrection.py +1 -1
  395. niwrap_freesurfer/freesurfer/mri_train.py +1 -1
  396. niwrap_freesurfer/freesurfer/mri_transform.py +1 -1
  397. niwrap_freesurfer/freesurfer/mri_twoclass.py +1 -1
  398. niwrap_freesurfer/freesurfer/mri_validate_skull_stripped.py +1 -1
  399. niwrap_freesurfer/freesurfer/mri_vessel_segment.py +1 -1
  400. niwrap_freesurfer/freesurfer/mri_vol2label.py +1 -1
  401. niwrap_freesurfer/freesurfer/mri_vol2surf.py +1 -1
  402. niwrap_freesurfer/freesurfer/mri_vol2vol.py +1 -1
  403. niwrap_freesurfer/freesurfer/mri_volcluster.py +1 -1
  404. niwrap_freesurfer/freesurfer/mri_voldiff.py +1 -1
  405. niwrap_freesurfer/freesurfer/mri_volsynth.py +1 -1
  406. niwrap_freesurfer/freesurfer/mri_warp_convert.py +1 -1
  407. niwrap_freesurfer/freesurfer/mri_watershed.py +1 -1
  408. niwrap_freesurfer/freesurfer/mri_wbc.py +1 -1
  409. niwrap_freesurfer/freesurfer/mri_xvolavg.py +1 -1
  410. niwrap_freesurfer/freesurfer/mri_z2p.py +1 -1
  411. niwrap_freesurfer/freesurfer/mris2rgb.py +1 -1
  412. niwrap_freesurfer/freesurfer/mris_aa_shrinkwrap.py +1 -1
  413. niwrap_freesurfer/freesurfer/mris_add_template.py +1 -1
  414. niwrap_freesurfer/freesurfer/mris_anatomical_stats.py +1 -1
  415. niwrap_freesurfer/freesurfer/mris_annot_diff.py +1 -1
  416. niwrap_freesurfer/freesurfer/mris_annot_to_segmentation.py +1 -1
  417. niwrap_freesurfer/freesurfer/mris_apply_reg.py +1 -1
  418. niwrap_freesurfer/freesurfer/mris_autodet_gwstats.py +1 -1
  419. niwrap_freesurfer/freesurfer/mris_average_curvature.py +1 -1
  420. niwrap_freesurfer/freesurfer/mris_ba_segment.py +1 -1
  421. niwrap_freesurfer/freesurfer/mris_ca_deform.py +1 -1
  422. niwrap_freesurfer/freesurfer/mris_ca_label.py +1 -1
  423. niwrap_freesurfer/freesurfer/mris_ca_train.py +1 -1
  424. niwrap_freesurfer/freesurfer/mris_calc.py +1 -1
  425. niwrap_freesurfer/freesurfer/mris_compute_acorr.py +1 -1
  426. niwrap_freesurfer/freesurfer/mris_compute_layer_intensities.py +1 -1
  427. niwrap_freesurfer/freesurfer/mris_compute_lgi.py +1 -1
  428. niwrap_freesurfer/freesurfer/mris_compute_overlap.py +1 -1
  429. niwrap_freesurfer/freesurfer/mris_compute_parc_overlap.py +1 -1
  430. niwrap_freesurfer/freesurfer/mris_compute_volume_fractions.py +1 -1
  431. niwrap_freesurfer/freesurfer/mris_congeal.py +1 -1
  432. niwrap_freesurfer/freesurfer/mris_convert.py +1 -1
  433. niwrap_freesurfer/freesurfer/mris_copy_header.py +1 -1
  434. niwrap_freesurfer/freesurfer/mris_curvature.py +1 -1
  435. niwrap_freesurfer/freesurfer/mris_curvature2image.py +1 -1
  436. niwrap_freesurfer/freesurfer/mris_curvature_stats.py +1 -1
  437. niwrap_freesurfer/freesurfer/mris_defects_pointset.py +1 -1
  438. niwrap_freesurfer/freesurfer/mris_deform.py +1 -1
  439. niwrap_freesurfer/freesurfer/mris_diff.py +1 -1
  440. niwrap_freesurfer/freesurfer/mris_distance_map.py +1 -1
  441. niwrap_freesurfer/freesurfer/mris_distance_to_label.py +1 -1
  442. niwrap_freesurfer/freesurfer/mris_distance_transform.py +1 -1
  443. niwrap_freesurfer/freesurfer/mris_divide_parcellation.py +1 -1
  444. niwrap_freesurfer/freesurfer/mris_entropy.py +1 -1
  445. niwrap_freesurfer/freesurfer/mris_errors.py +1 -1
  446. niwrap_freesurfer/freesurfer/mris_estimate_wm.py +1 -1
  447. niwrap_freesurfer/freesurfer/mris_euler_number.py +1 -1
  448. niwrap_freesurfer/freesurfer/mris_expand.py +1 -1
  449. niwrap_freesurfer/freesurfer/mris_extract_main_component.py +1 -1
  450. niwrap_freesurfer/freesurfer/mris_extract_patches.py +1 -1
  451. niwrap_freesurfer/freesurfer/mris_extract_values.py +1 -1
  452. niwrap_freesurfer/freesurfer/mris_exvivo_surfaces.py +1 -1
  453. niwrap_freesurfer/freesurfer/mris_fill.py +1 -1
  454. niwrap_freesurfer/freesurfer/mris_find_flat_regions.py +1 -1
  455. niwrap_freesurfer/freesurfer/mris_fix_topology.py +1 -1
  456. niwrap_freesurfer/freesurfer/mris_flatten.py +1 -1
  457. niwrap_freesurfer/freesurfer/mris_fwhm.py +1 -1
  458. niwrap_freesurfer/freesurfer/mris_gradient.py +1 -1
  459. niwrap_freesurfer/freesurfer/mris_hausdorff_dist.py +1 -1
  460. niwrap_freesurfer/freesurfer/mris_image2vtk.py +1 -1
  461. niwrap_freesurfer/freesurfer/mris_inflate.py +1 -1
  462. niwrap_freesurfer/freesurfer/mris_info.py +1 -1
  463. niwrap_freesurfer/freesurfer/mris_init_global_tractography.py +1 -1
  464. niwrap_freesurfer/freesurfer/mris_intensity_profile.py +1 -1
  465. niwrap_freesurfer/freesurfer/mris_interpolate_warp.py +1 -1
  466. niwrap_freesurfer/freesurfer/mris_jacobian.py +1 -1
  467. niwrap_freesurfer/freesurfer/mris_label2annot.py +1 -1
  468. niwrap_freesurfer/freesurfer/mris_label_area.py +1 -1
  469. niwrap_freesurfer/freesurfer/mris_label_calc.py +1 -1
  470. niwrap_freesurfer/freesurfer/mris_label_mode.py +1 -1
  471. niwrap_freesurfer/freesurfer/mris_left_right_register.py +1 -1
  472. niwrap_freesurfer/freesurfer/mris_make_average_surface.py +1 -1
  473. niwrap_freesurfer/freesurfer/mris_make_face_parcellation.py +1 -1
  474. niwrap_freesurfer/freesurfer/mris_make_surfaces.py +1 -1
  475. niwrap_freesurfer/freesurfer/mris_make_template.py +1 -1
  476. niwrap_freesurfer/freesurfer/mris_map_cuts.py +1 -1
  477. niwrap_freesurfer/freesurfer/mris_mef_surfaces.py +1 -1
  478. niwrap_freesurfer/freesurfer/mris_merge_parcellations.py +1 -1
  479. niwrap_freesurfer/freesurfer/mris_mesh_subdivide.py +1 -1
  480. niwrap_freesurfer/freesurfer/mris_morph_stats.py +1 -1
  481. niwrap_freesurfer/freesurfer/mris_ms_refine.py +1 -1
  482. niwrap_freesurfer/freesurfer/mris_multimodal.py +1 -1
  483. niwrap_freesurfer/freesurfer/mris_multimodal_surface_placement.py +1 -1
  484. niwrap_freesurfer/freesurfer/mris_multiscale_stats.py +1 -1
  485. niwrap_freesurfer/freesurfer/mris_niters2fwhm.py +1 -1
  486. niwrap_freesurfer/freesurfer/mris_nudge.py +1 -1
  487. niwrap_freesurfer/freesurfer/mris_parcellate_connectivity.py +1 -1
  488. niwrap_freesurfer/freesurfer/mris_place_surface.py +1 -1
  489. niwrap_freesurfer/freesurfer/mris_pmake.py +1 -1
  490. niwrap_freesurfer/freesurfer/mris_preproc.py +1 -1
  491. niwrap_freesurfer/freesurfer/mris_profile_clustering.py +1 -1
  492. niwrap_freesurfer/freesurfer/mris_refine_surfaces.py +1 -1
  493. niwrap_freesurfer/freesurfer/mris_register.py +1 -1
  494. niwrap_freesurfer/freesurfer/mris_register_label_map.py +1 -1
  495. niwrap_freesurfer/freesurfer/mris_register_to_label.py +1 -1
  496. niwrap_freesurfer/freesurfer/mris_register_to_volume.py +1 -1
  497. niwrap_freesurfer/freesurfer/mris_remesh.py +1 -1
  498. niwrap_freesurfer/freesurfer/mris_remove_intersection.py +1 -1
  499. niwrap_freesurfer/freesurfer/mris_remove_negative_vertices.py +1 -1
  500. niwrap_freesurfer/freesurfer/mris_remove_variance.py +1 -1
  501. niwrap_freesurfer/freesurfer/mris_reposition_surface.py +1 -1
  502. niwrap_freesurfer/freesurfer/mris_resample.py +1 -1
  503. niwrap_freesurfer/freesurfer/mris_rescale.py +1 -1
  504. niwrap_freesurfer/freesurfer/mris_reverse.py +1 -1
  505. niwrap_freesurfer/freesurfer/mris_rf_label.py +1 -1
  506. niwrap_freesurfer/freesurfer/mris_rf_train.py +1 -1
  507. niwrap_freesurfer/freesurfer/mris_rotate.py +1 -1
  508. niwrap_freesurfer/freesurfer/mris_sample_label.py +1 -1
  509. niwrap_freesurfer/freesurfer/mris_sample_parc.py +1 -1
  510. niwrap_freesurfer/freesurfer/mris_seg2annot.py +1 -1
  511. niwrap_freesurfer/freesurfer/mris_segment.py +1 -1
  512. niwrap_freesurfer/freesurfer/mris_segment_vals.py +1 -1
  513. niwrap_freesurfer/freesurfer/mris_segmentation_stats.py +1 -1
  514. niwrap_freesurfer/freesurfer/mris_shrinkwrap.py +1 -1
  515. niwrap_freesurfer/freesurfer/mris_simulate_atrophy.py +1 -1
  516. niwrap_freesurfer/freesurfer/mris_skeletonize.py +1 -1
  517. niwrap_freesurfer/freesurfer/mris_smooth.py +1 -1
  518. niwrap_freesurfer/freesurfer/mris_smooth_intracortical.py +1 -1
  519. niwrap_freesurfer/freesurfer/mris_sphere.py +1 -1
  520. niwrap_freesurfer/freesurfer/mris_spherical_average.py +1 -1
  521. niwrap_freesurfer/freesurfer/mris_surf2vtk.py +1 -1
  522. niwrap_freesurfer/freesurfer/mris_surface_stats.py +1 -1
  523. niwrap_freesurfer/freesurfer/mris_surface_to_vol_distances.py +1 -1
  524. niwrap_freesurfer/freesurfer/mris_talairach.py +1 -1
  525. niwrap_freesurfer/freesurfer/mris_target_pos.py +1 -1
  526. niwrap_freesurfer/freesurfer/mris_thickness.py +1 -1
  527. niwrap_freesurfer/freesurfer/mris_thickness_comparison.py +1 -1
  528. niwrap_freesurfer/freesurfer/mris_thickness_diff.py +1 -1
  529. niwrap_freesurfer/freesurfer/mris_topo_fixer.py +1 -1
  530. niwrap_freesurfer/freesurfer/mris_transform.py +1 -1
  531. niwrap_freesurfer/freesurfer/mris_translate_annotation.py +1 -1
  532. niwrap_freesurfer/freesurfer/mris_transmantle_dysplasia_paths.py +1 -1
  533. niwrap_freesurfer/freesurfer/mris_volmask.py +1 -1
  534. niwrap_freesurfer/freesurfer/mris_volmask_novtk.py +1 -1
  535. niwrap_freesurfer/freesurfer/mris_volmask_vtk.py +1 -1
  536. niwrap_freesurfer/freesurfer/mris_volsmooth.py +1 -1
  537. niwrap_freesurfer/freesurfer/mris_volume.py +1 -1
  538. niwrap_freesurfer/freesurfer/mris_warp.py +1 -1
  539. niwrap_freesurfer/freesurfer/mris_watershed.py +1 -1
  540. niwrap_freesurfer/freesurfer/mris_wm_volume.py +1 -1
  541. niwrap_freesurfer/freesurfer/mrisp_paint.py +1 -1
  542. niwrap_freesurfer/freesurfer/mrisp_write.py +1 -1
  543. niwrap_freesurfer/freesurfer/ms_refine_subject.py +1 -1
  544. niwrap_freesurfer/freesurfer/nmovie_qt.py +1 -1
  545. niwrap_freesurfer/freesurfer/oct_register_mosaic.py +1 -1
  546. niwrap_freesurfer/freesurfer/optseq2.py +1 -1
  547. niwrap_freesurfer/freesurfer/orient_las.py +1 -1
  548. niwrap_freesurfer/freesurfer/parc_atlas_jackknife_test.py +1 -1
  549. niwrap_freesurfer/freesurfer/pctsurfcon.py +1 -1
  550. niwrap_freesurfer/freesurfer/plot_structure_stats_tcl.py +1 -1
  551. niwrap_freesurfer/freesurfer/pointset2label.py +1 -1
  552. niwrap_freesurfer/freesurfer/polyorder.py +1 -1
  553. niwrap_freesurfer/freesurfer/post_recon_all.py +1 -1
  554. niwrap_freesurfer/freesurfer/predict_v1_sh.py +1 -1
  555. niwrap_freesurfer/freesurfer/print_unique_labels_csh.py +1 -1
  556. niwrap_freesurfer/freesurfer/qatools_py.py +1 -1
  557. niwrap_freesurfer/freesurfer/quantify_brainstem_structures_sh.py +1 -1
  558. niwrap_freesurfer/freesurfer/quantify_hasubregions_sh.py +1 -1
  559. niwrap_freesurfer/freesurfer/quantify_thalamic_nuclei_sh.py +1 -1
  560. niwrap_freesurfer/freesurfer/rbbr.py +1 -1
  561. niwrap_freesurfer/freesurfer/rca_base_init.py +1 -1
  562. niwrap_freesurfer/freesurfer/rca_config.py +1 -1
  563. niwrap_freesurfer/freesurfer/rca_config2csh.py +1 -1
  564. niwrap_freesurfer/freesurfer/rca_fix_ento.py +1 -1
  565. niwrap_freesurfer/freesurfer/rca_long_tp_init.py +1 -1
  566. niwrap_freesurfer/freesurfer/rcbf_prep.py +1 -1
  567. niwrap_freesurfer/freesurfer/recon_all.py +1 -1
  568. niwrap_freesurfer/freesurfer/recon_all_clinical_sh.py +1 -1
  569. niwrap_freesurfer/freesurfer/recon_all_exvivo.py +1 -1
  570. niwrap_freesurfer/freesurfer/reconbatchjobs.py +1 -1
  571. niwrap_freesurfer/freesurfer/reg2subject.py +1 -1
  572. niwrap_freesurfer/freesurfer/reg_feat2anat.py +1 -1
  573. niwrap_freesurfer/freesurfer/reg_mni305_2mm.py +1 -1
  574. niwrap_freesurfer/freesurfer/regdat2xfm.py +1 -1
  575. niwrap_freesurfer/freesurfer/register_child.py +1 -1
  576. niwrap_freesurfer/freesurfer/register_csh.py +1 -1
  577. niwrap_freesurfer/freesurfer/register_elderly_subject.py +1 -1
  578. niwrap_freesurfer/freesurfer/register_subject.py +1 -1
  579. niwrap_freesurfer/freesurfer/register_subject_flash.py +1 -1
  580. niwrap_freesurfer/freesurfer/reinflate_subject.py +1 -1
  581. niwrap_freesurfer/freesurfer/reinflate_subject_lh.py +1 -1
  582. niwrap_freesurfer/freesurfer/reinflate_subject_rh.py +1 -1
  583. niwrap_freesurfer/freesurfer/remove_talairach.py +1 -1
  584. niwrap_freesurfer/freesurfer/renormalize_subject_keep_editting.py +1 -1
  585. niwrap_freesurfer/freesurfer/renormalize_t1_subject.py +1 -1
  586. niwrap_freesurfer/freesurfer/reregister_subject_mixed.py +1 -1
  587. niwrap_freesurfer/freesurfer/rtview.py +1 -1
  588. niwrap_freesurfer/freesurfer/run_mris_preproc.py +1 -1
  589. niwrap_freesurfer/freesurfer/run_qdec_glm.py +1 -1
  590. niwrap_freesurfer/freesurfer/run_samseg.py +1 -1
  591. niwrap_freesurfer/freesurfer/run_samseg_long.py +1 -1
  592. niwrap_freesurfer/freesurfer/run_segment_subfields_t1_longitudinal_sh.py +1 -1
  593. niwrap_freesurfer/freesurfer/run_segment_subject_sh.py +1 -1
  594. niwrap_freesurfer/freesurfer/run_segment_subject_t1_auto_estimate_alveus_ml_sh.py +1 -1
  595. niwrap_freesurfer/freesurfer/run_segment_subject_t1_t2_auto_estimate_alveus_ml_sh.py +1 -1
  596. niwrap_freesurfer/freesurfer/run_segment_subject_t2_auto_estimate_alveus_ml_sh.py +1 -1
  597. niwrap_freesurfer/freesurfer/run_segment_thalamic_nuclei_sh.py +1 -1
  598. niwrap_freesurfer/freesurfer/samseg.py +1 -1
  599. niwrap_freesurfer/freesurfer/samseg2recon.py +1 -1
  600. niwrap_freesurfer/freesurfer/samseg_long.py +1 -1
  601. niwrap_freesurfer/freesurfer/samsegmesh2surf.py +1 -1
  602. niwrap_freesurfer/freesurfer/sbtiv.py +1 -1
  603. niwrap_freesurfer/freesurfer/seg2filled.py +1 -1
  604. niwrap_freesurfer/freesurfer/seg2recon.py +1 -1
  605. niwrap_freesurfer/freesurfer/segment_bs_sh.py +1 -1
  606. niwrap_freesurfer/freesurfer/segment_ha_t1_long_sh.py +1 -1
  607. niwrap_freesurfer/freesurfer/segment_ha_t1_sh.py +1 -1
  608. niwrap_freesurfer/freesurfer/segment_ha_t2_sh.py +1 -1
  609. niwrap_freesurfer/freesurfer/segment_monkey.py +1 -1
  610. niwrap_freesurfer/freesurfer/segment_subfields_t1_longitudinal.py +1 -1
  611. niwrap_freesurfer/freesurfer/segment_subject.py +1 -1
  612. niwrap_freesurfer/freesurfer/segment_subject_notal.py +1 -1
  613. niwrap_freesurfer/freesurfer/segment_subject_notal2.py +1 -1
  614. niwrap_freesurfer/freesurfer/segment_subject_old_skull_strip.py +1 -1
  615. niwrap_freesurfer/freesurfer/segment_subject_sc.py +1 -1
  616. niwrap_freesurfer/freesurfer/segment_subject_t1_auto_estimate_alveus_ml.py +1 -1
  617. niwrap_freesurfer/freesurfer/segment_subject_t1_t2_auto_estimate_alveus_ml.py +1 -1
  618. niwrap_freesurfer/freesurfer/segment_subject_t2_auto_estimate_alveus_ml.py +1 -1
  619. niwrap_freesurfer/freesurfer/segment_subregions.py +1 -1
  620. niwrap_freesurfer/freesurfer/segment_thalamic_nuclei.py +1 -1
  621. niwrap_freesurfer/freesurfer/segment_thalamic_nuclei_sh.py +1 -1
  622. niwrap_freesurfer/freesurfer/segpons.py +1 -1
  623. niwrap_freesurfer/freesurfer/setlabelstat.py +1 -1
  624. niwrap_freesurfer/freesurfer/sfa2fieldsign.py +1 -1
  625. niwrap_freesurfer/freesurfer/slicedelay.py +1 -1
  626. niwrap_freesurfer/freesurfer/sphere_subject.py +1 -1
  627. niwrap_freesurfer/freesurfer/sphere_subject_lh.py +1 -1
  628. niwrap_freesurfer/freesurfer/sphere_subject_rh.py +1 -1
  629. niwrap_freesurfer/freesurfer/spline3_test.py +1 -1
  630. niwrap_freesurfer/freesurfer/spm_t_to_b.py +1 -1
  631. niwrap_freesurfer/freesurfer/spmregister.py +1 -1
  632. niwrap_freesurfer/freesurfer/sratio.py +1 -1
  633. niwrap_freesurfer/freesurfer/stat_normalize.py +1 -1
  634. niwrap_freesurfer/freesurfer/stattablediff.py +1 -1
  635. niwrap_freesurfer/freesurfer/stem2fname.py +1 -1
  636. niwrap_freesurfer/freesurfer/surf2vol.py +1 -1
  637. niwrap_freesurfer/freesurfer/surfreg.py +1 -1
  638. niwrap_freesurfer/freesurfer/swi_preprocess.py +1 -1
  639. niwrap_freesurfer/freesurfer/swi_process.py +1 -1
  640. niwrap_freesurfer/freesurfer/t4img_4dfp.py +1 -1
  641. niwrap_freesurfer/freesurfer/t4imgs_4dfp.py +1 -1
  642. niwrap_freesurfer/freesurfer/table2map.py +1 -1
  643. niwrap_freesurfer/freesurfer/tal_compare.py +1 -1
  644. niwrap_freesurfer/freesurfer/tal_qc_azs.py +1 -1
  645. niwrap_freesurfer/freesurfer/talairach.py +1 -1
  646. niwrap_freesurfer/freesurfer/talairach2.py +1 -1
  647. niwrap_freesurfer/freesurfer/talairach_afd.py +1 -1
  648. niwrap_freesurfer/freesurfer/talairach_avi.py +1 -1
  649. niwrap_freesurfer/freesurfer/talairach_mgh.py +1 -1
  650. niwrap_freesurfer/freesurfer/talsegprob.py +1 -1
  651. niwrap_freesurfer/freesurfer/test_orientation_planes_from_parcellation.py +1 -1
  652. niwrap_freesurfer/freesurfer/test_recon_all_csh.py +1 -1
  653. niwrap_freesurfer/freesurfer/test_tutorials_sh.py +1 -1
  654. niwrap_freesurfer/freesurfer/thickdiffmap.py +1 -1
  655. niwrap_freesurfer/freesurfer/tkmedit.py +1 -1
  656. niwrap_freesurfer/freesurfer/tkmeditfv.py +1 -1
  657. niwrap_freesurfer/freesurfer/tkregister2.py +1 -1
  658. niwrap_freesurfer/freesurfer/tkregister2_cmdl.py +1 -1
  659. niwrap_freesurfer/freesurfer/tkregisterfv.py +1 -1
  660. niwrap_freesurfer/freesurfer/tksurfer.py +1 -1
  661. niwrap_freesurfer/freesurfer/tksurferfv.py +1 -1
  662. niwrap_freesurfer/freesurfer/trac_all.py +1 -1
  663. niwrap_freesurfer/freesurfer/trac_paths.py +1 -1
  664. niwrap_freesurfer/freesurfer/trac_preproc.py +1 -1
  665. niwrap_freesurfer/freesurfer/tractstats2table.py +1 -1
  666. niwrap_freesurfer/freesurfer/train_gcs_atlas.py +1 -1
  667. niwrap_freesurfer/freesurfer/tridec.py +1 -1
  668. niwrap_freesurfer/freesurfer/trk_tools.py +1 -1
  669. niwrap_freesurfer/freesurfer/unpack_ima1_tcl.py +1 -1
  670. niwrap_freesurfer/freesurfer/unpack_ima_tcl.py +1 -1
  671. niwrap_freesurfer/freesurfer/unpack_mnc_tcl.py +1 -1
  672. niwrap_freesurfer/freesurfer/unpackimadir.py +1 -1
  673. niwrap_freesurfer/freesurfer/unpackimadir2.py +1 -1
  674. niwrap_freesurfer/freesurfer/unpackmincdir.py +1 -1
  675. niwrap_freesurfer/freesurfer/unpacksdcmdir.py +1 -1
  676. niwrap_freesurfer/freesurfer/update_needed.py +1 -1
  677. niwrap_freesurfer/freesurfer/v_3dvolreg_afni.py +1 -1
  678. niwrap_freesurfer/freesurfer/v_4dfptoanalyze.py +1 -1
  679. niwrap_freesurfer/freesurfer/ventfix.py +1 -1
  680. niwrap_freesurfer/freesurfer/vertexvol.py +1 -1
  681. niwrap_freesurfer/freesurfer/vno_match_check.py +1 -1
  682. niwrap_freesurfer/freesurfer/vol2segavg.py +1 -1
  683. niwrap_freesurfer/freesurfer/vol2subfield.py +1 -1
  684. niwrap_freesurfer/freesurfer/vol2symsurf.py +1 -1
  685. niwrap_freesurfer/freesurfer/vsm_smooth.py +1 -1
  686. niwrap_freesurfer/freesurfer/wfilemask.py +1 -1
  687. niwrap_freesurfer/freesurfer/wm_anat_snr.py +1 -1
  688. niwrap_freesurfer/freesurfer/wmedits2surf.py +1 -1
  689. niwrap_freesurfer/freesurfer/wmsaseg.py +1 -1
  690. niwrap_freesurfer/freesurfer/xcerebralseg.py +1 -1
  691. niwrap_freesurfer/freesurfer/xcorr.py +1 -1
  692. niwrap_freesurfer/freesurfer/xfmrot.py +1 -1
  693. niwrap_freesurfer/freesurfer/xhemi_tal.py +1 -1
  694. niwrap_freesurfer/freesurfer/xhemireg.py +1 -1
  695. niwrap_freesurfer/freesurfer/xsanatreg.py +1 -1
  696. niwrap_freesurfer/freesurfer/zero_lt_4dfp.py +1 -1
  697. {niwrap_freesurfer-0.6.1.dist-info → niwrap_freesurfer-0.6.2.dist-info}/METADATA +1 -1
  698. niwrap_freesurfer-0.6.2.dist-info/RECORD +700 -0
  699. niwrap_freesurfer-0.6.1.dist-info/RECORD +0 -700
  700. {niwrap_freesurfer-0.6.1.dist-info → niwrap_freesurfer-0.6.2.dist-info}/WHEEL +0 -0
niwrap_freesurfer/freesurfer/mri_robust_template.py CHANGED
@@ -14,7 +14,7 @@ MRI_ROBUST_TEMPLATE_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriRobustTemplateParameters = typing.TypedDict('MriRobustTemplateParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_robust_template"],
17
+ "__STYXTYPE__": typing.Literal["mri_robust_template"],
18
18
  "mov_files": list[InputPathType],
19
19
  "template_file": str,
20
20
  "sat_value": typing.NotRequired[float | None],
niwrap_freesurfer/freesurfer/mri_sbbr.py CHANGED
@@ -14,7 +14,7 @@ MRI_SBBR_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriSbbrParameters = typing.TypedDict('MriSbbrParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_sbbr"],
17
+ "__STYXTYPE__": typing.Literal["mri_sbbr"],
18
18
  "template_volume": InputPathType,
19
19
  "surface_file": InputPathType,
20
20
  "init_reg_file": InputPathType,
niwrap_freesurfer/freesurfer/mri_sclimbic_seg.py CHANGED
@@ -14,7 +14,7 @@ MRI_SCLIMBIC_SEG_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriSclimbicSegParameters = typing.TypedDict('MriSclimbicSegParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_sclimbic_seg"],
17
+ "__STYXTYPE__": typing.Literal["mri_sclimbic_seg"],
18
18
  "input_file": str,
19
19
  "output_file": str,
20
20
  "subjects": typing.NotRequired[list[str] | None],
niwrap_freesurfer/freesurfer/mri_seg_diff.py CHANGED
@@ -14,7 +14,7 @@ MRI_SEG_DIFF_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriSegDiffParameters = typing.TypedDict('MriSegDiffParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_seg_diff"],
17
+ "__STYXTYPE__": typing.Literal["mri_seg_diff"],
18
18
  "seg1": typing.NotRequired[InputPathType | None],
19
19
  "seg2": typing.NotRequired[InputPathType | None],
20
20
  "seg": typing.NotRequired[InputPathType | None],
niwrap_freesurfer/freesurfer/mri_seg_overlap.py CHANGED
@@ -14,7 +14,7 @@ MRI_SEG_OVERLAP_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriSegOverlapParameters = typing.TypedDict('MriSegOverlapParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_seg_overlap"],
17
+ "__STYXTYPE__": typing.Literal["mri_seg_overlap"],
18
18
  "vol1": InputPathType,
19
19
  "vol2": InputPathType,
20
20
  "out_file": typing.NotRequired[str | None],
niwrap_freesurfer/freesurfer/mri_segcentroids.py CHANGED
@@ -14,7 +14,7 @@ MRI_SEGCENTROIDS_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriSegcentroidsParameters = typing.TypedDict('MriSegcentroidsParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_segcentroids"],
17
+ "__STYXTYPE__": typing.Literal["mri_segcentroids"],
18
18
  "input_segmentation": InputPathType,
19
19
  "output_file": str,
20
20
  "pointset_flag": bool,
niwrap_freesurfer/freesurfer/mri_seghead.py CHANGED
@@ -14,7 +14,7 @@ MRI_SEGHEAD_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriSegheadParameters = typing.TypedDict('MriSegheadParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_seghead"],
17
+ "__STYXTYPE__": typing.Literal["mri_seghead"],
18
18
  "input_volume": str,
19
19
  "output_volume": str,
20
20
  "fill_value": typing.NotRequired[float | None],
niwrap_freesurfer/freesurfer/mri_segment.py CHANGED
@@ -14,7 +14,7 @@ MRI_SEGMENT_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriSegmentParameters = typing.TypedDict('MriSegmentParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_segment"],
17
+ "__STYXTYPE__": typing.Literal["mri_segment"],
18
18
  "in_vol": InputPathType,
19
19
  "out_vol": str,
20
20
  "no1d_remove": typing.NotRequired[float | None],
niwrap_freesurfer/freesurfer/mri_segment_hypothalamic_subunits.py CHANGED
@@ -14,7 +14,7 @@ MRI_SEGMENT_HYPOTHALAMIC_SUBUNITS_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriSegmentHypothalamicSubunitsParameters = typing.TypedDict('MriSegmentHypothalamicSubunitsParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_segment_hypothalamic_subunits"],
17
+ "__STYXTYPE__": typing.Literal["mri_segment_hypothalamic_subunits"],
18
18
  "subjects": typing.NotRequired[list[str] | None],
19
19
  "subjects_dir": typing.NotRequired[str | None],
20
20
  "write_posteriors": bool,
niwrap_freesurfer/freesurfer/mri_segment_thalamic_nuclei_dti_cnn.py CHANGED
@@ -14,7 +14,7 @@ MRI_SEGMENT_THALAMIC_NUCLEI_DTI_CNN_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriSegmentThalamicNucleiDtiCnnParameters = typing.TypedDict('MriSegmentThalamicNucleiDtiCnnParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_segment_thalamic_nuclei_dti_cnn"],
17
+ "__STYXTYPE__": typing.Literal["mri_segment_thalamic_nuclei_dti_cnn"],
18
18
  "t1_images": InputPathType,
19
19
  "aseg": typing.NotRequired[InputPathType | None],
20
20
  "fa": InputPathType,
niwrap_freesurfer/freesurfer/mri_segreg.py CHANGED
@@ -14,7 +14,7 @@ MRI_SEGREG_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriSegregParameters = typing.TypedDict('MriSegregParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_segreg"],
17
+ "__STYXTYPE__": typing.Literal["mri_segreg"],
18
18
  "input_file": InputPathType,
19
19
  "output_file": str,
20
20
  })
niwrap_freesurfer/freesurfer/mri_segstats.py CHANGED
@@ -14,7 +14,7 @@ MRI_SEGSTATS_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriSegstatsParameters = typing.TypedDict('MriSegstatsParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_segstats"],
17
+ "__STYXTYPE__": typing.Literal["mri_segstats"],
18
18
  "segvol": InputPathType,
19
19
  "annot_subject": typing.NotRequired[str | None],
20
20
  "annot_hemisphere": typing.NotRequired[str | None],
niwrap_freesurfer/freesurfer/mri_sph2surf.py CHANGED
@@ -14,7 +14,7 @@ MRI_SPH2SURF_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriSph2surfParameters = typing.TypedDict('MriSph2surfParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri-sph2surf"],
17
+ "__STYXTYPE__": typing.Literal["mri-sph2surf"],
18
18
  "instem": str,
19
19
  "outstem": str,
20
20
  "hemi": str,
niwrap_freesurfer/freesurfer/mri_stats2seg.py CHANGED
@@ -14,7 +14,7 @@ MRI_STATS2SEG_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriStats2segParameters = typing.TypedDict('MriStats2segParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_stats2seg"],
17
+ "__STYXTYPE__": typing.Literal["mri_stats2seg"],
18
18
  "stat_file": InputPathType,
19
19
  "segmentation_volume": InputPathType,
20
20
  "output_file": str,
niwrap_freesurfer/freesurfer/mri_stopmask.py CHANGED
@@ -14,7 +14,7 @@ MRI_STOPMASK_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriStopmaskParameters = typing.TypedDict('MriStopmaskParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_stopmask"],
17
+ "__STYXTYPE__": typing.Literal["mri_stopmask"],
18
18
  "output_mask": str,
19
19
  "filled": list[InputPathType],
20
20
  "aseg_presurf": InputPathType,
niwrap_freesurfer/freesurfer/mri_strip_nonwhite.py CHANGED
@@ -14,7 +14,7 @@ MRI_STRIP_NONWHITE_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriStripNonwhiteParameters = typing.TypedDict('MriStripNonwhiteParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_strip_nonwhite"],
17
+ "__STYXTYPE__": typing.Literal["mri_strip_nonwhite"],
18
18
  "input_volume": InputPathType,
19
19
  "transform": InputPathType,
20
20
  "template_volume": InputPathType,
niwrap_freesurfer/freesurfer/mri_strip_subject_info.py CHANGED
@@ -14,7 +14,7 @@ MRI_STRIP_SUBJECT_INFO_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriStripSubjectInfoParameters = typing.TypedDict('MriStripSubjectInfoParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_strip_subject_info"],
17
+ "__STYXTYPE__": typing.Literal["mri_strip_subject_info"],
18
18
  "input_files": list[InputPathType],
19
19
  "output_directory": str,
20
20
  })
niwrap_freesurfer/freesurfer/mri_surf2surf.py CHANGED
@@ -14,7 +14,7 @@ MRI_SURF2SURF_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriSurf2surfParameters = typing.TypedDict('MriSurf2surfParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_surf2surf"],
17
+ "__STYXTYPE__": typing.Literal["mri_surf2surf"],
18
18
  "src_subject": str,
19
19
  "sval_path": typing.NotRequired[InputPathType | None],
20
20
  "sval_xyz": typing.NotRequired[str | None],
niwrap_freesurfer/freesurfer/mri_surf2vol.py CHANGED
@@ -14,7 +14,7 @@ MRI_SURF2VOL_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriSurf2volParameters = typing.TypedDict('MriSurf2volParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_surf2vol"],
17
+ "__STYXTYPE__": typing.Literal["mri_surf2vol"],
18
18
  "surface_overlay": typing.NotRequired[list[str] | None],
19
19
  "ltafile": typing.NotRequired[InputPathType | None],
20
20
  "outfile": str,
niwrap_freesurfer/freesurfer/mri_surf2volseg.py CHANGED
@@ -14,7 +14,7 @@ MRI_SURF2VOLSEG_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriSurf2volsegParameters = typing.TypedDict('MriSurf2volsegParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_surf2volseg"],
17
+ "__STYXTYPE__": typing.Literal["mri_surf2volseg"],
18
18
  "input_segmentation": typing.NotRequired[InputPathType | None],
19
19
  "output_segmentation": typing.NotRequired[str | None],
20
20
  "source_segmentation": typing.NotRequired[InputPathType | None],
niwrap_freesurfer/freesurfer/mri_surfacemask.py CHANGED
@@ -14,7 +14,7 @@ MRI_SURFACEMASK_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriSurfacemaskParameters = typing.TypedDict('MriSurfacemaskParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_surfacemask"],
17
+ "__STYXTYPE__": typing.Literal["mri_surfacemask"],
18
18
  "input_volume": InputPathType,
19
19
  "input_surface": InputPathType,
20
20
  "output_volume": str,
niwrap_freesurfer/freesurfer/mri_surfcluster.py CHANGED
@@ -14,7 +14,7 @@ MRI_SURFCLUSTER_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriSurfclusterParameters = typing.TypedDict('MriSurfclusterParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_surfcluster"],
17
+ "__STYXTYPE__": typing.Literal["mri_surfcluster"],
18
18
  "infile": InputPathType,
19
19
  "thmin": typing.NotRequired[float | None],
20
20
  "sign": typing.NotRequired[str | None],
niwrap_freesurfer/freesurfer/mri_synthesize.py CHANGED
@@ -14,7 +14,7 @@ MRI_SYNTHESIZE_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriSynthesizeParameters = typing.TypedDict('MriSynthesizeParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_synthesize"],
17
+ "__STYXTYPE__": typing.Literal["mri_synthesize"],
18
18
  "tr": float,
19
19
  "alpha": float,
20
20
  "te": float,
niwrap_freesurfer/freesurfer/mri_synthmorph.py CHANGED
@@ -14,7 +14,7 @@ MRI_SYNTHMORPH_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriSynthmorphParameters = typing.TypedDict('MriSynthmorphParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_synthmorph"],
17
+ "__STYXTYPE__": typing.Literal["mri_synthmorph"],
18
18
  "moving_image": InputPathType,
19
19
  "fixed_image": InputPathType,
20
20
  "moved_output": typing.NotRequired[str | None],
niwrap_freesurfer/freesurfer/mri_synthseg.py CHANGED
@@ -14,7 +14,7 @@ MRI_SYNTHSEG_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriSynthsegParameters = typing.TypedDict('MriSynthsegParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_synthseg"],
17
+ "__STYXTYPE__": typing.Literal["mri_synthseg"],
18
18
  "input_image": InputPathType,
19
19
  "output_segmentation": str,
20
20
  "cortex_parcellation": bool,
niwrap_freesurfer/freesurfer/mri_synthsr.py CHANGED
@@ -14,7 +14,7 @@ MRI_SYNTHSR_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriSynthsrParameters = typing.TypedDict('MriSynthsrParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_synthsr"],
17
+ "__STYXTYPE__": typing.Literal["mri_synthsr"],
18
18
  "input": str,
19
19
  "output": str,
20
20
  "ct": bool,
niwrap_freesurfer/freesurfer/mri_synthsr_hyperfine.py CHANGED
@@ -14,7 +14,7 @@ MRI_SYNTHSR_HYPERFINE_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriSynthsrHyperfineParameters = typing.TypedDict('MriSynthsrHyperfineParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_synthsr_hyperfine"],
17
+ "__STYXTYPE__": typing.Literal["mri_synthsr_hyperfine"],
18
18
  "t1_image": InputPathType,
19
19
  "t2_image": InputPathType,
20
20
  "output": str,
niwrap_freesurfer/freesurfer/mri_synthstrip.py CHANGED
@@ -14,7 +14,7 @@ MRI_SYNTHSTRIP_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriSynthstripParameters = typing.TypedDict('MriSynthstripParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_synthstrip"],
17
+ "__STYXTYPE__": typing.Literal["mri_synthstrip"],
18
18
  "image": InputPathType,
19
19
  "output_image": typing.NotRequired[str | None],
20
20
  "mask": typing.NotRequired[InputPathType | None],
niwrap_freesurfer/freesurfer/mri_tessellate.py CHANGED
@@ -14,7 +14,7 @@ MRI_TESSELLATE_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriTessellateParameters = typing.TypedDict('MriTessellateParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_tessellate"],
17
+ "__STYXTYPE__": typing.Literal["mri_tessellate"],
18
18
  "input_volume": InputPathType,
19
19
  "label_value": int,
20
20
  "output_surf": str,
niwrap_freesurfer/freesurfer/mri_threshold.py CHANGED
@@ -14,7 +14,7 @@ MRI_THRESHOLD_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriThresholdParameters = typing.TypedDict('MriThresholdParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_threshold"],
17
+ "__STYXTYPE__": typing.Literal["mri_threshold"],
18
18
  "input_vol": InputPathType,
19
19
  "threshold": float,
20
20
  "output_vol": str,
niwrap_freesurfer/freesurfer/mri_topologycorrection.py CHANGED
@@ -14,7 +14,7 @@ MRI_TOPOLOGYCORRECTION_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriTopologycorrectionParameters = typing.TypedDict('MriTopologycorrectionParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_topologycorrection"],
17
+ "__STYXTYPE__": typing.Literal["mri_topologycorrection"],
18
18
  "input_orig_file": InputPathType,
19
19
  "input_segmented_file": InputPathType,
20
20
  })
niwrap_freesurfer/freesurfer/mri_train.py CHANGED
@@ -14,7 +14,7 @@ MRI_TRAIN_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriTrainParameters = typing.TypedDict('MriTrainParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_train"],
17
+ "__STYXTYPE__": typing.Literal["mri_train"],
18
18
  "training_file": InputPathType,
19
19
  "output_file": str,
20
20
  })
niwrap_freesurfer/freesurfer/mri_transform.py CHANGED
@@ -14,7 +14,7 @@ MRI_TRANSFORM_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriTransformParameters = typing.TypedDict('MriTransformParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_transform"],
17
+ "__STYXTYPE__": typing.Literal["mri_transform"],
18
18
  "input_volume": InputPathType,
19
19
  "lta_file": InputPathType,
20
20
  "output_file": str,
niwrap_freesurfer/freesurfer/mri_twoclass.py CHANGED
@@ -14,7 +14,7 @@ MRI_TWOCLASS_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriTwoclassParameters = typing.TypedDict('MriTwoclassParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_twoclass"],
17
+ "__STYXTYPE__": typing.Literal["mri_twoclass"],
18
18
  "segmentation_volume": InputPathType,
19
19
  "output_subject": str,
20
20
  "output_volume": str,
niwrap_freesurfer/freesurfer/mri_validate_skull_stripped.py CHANGED
@@ -14,7 +14,7 @@ MRI_VALIDATE_SKULL_STRIPPED_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriValidateSkullStrippedParameters = typing.TypedDict('MriValidateSkullStrippedParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_validate_skull_stripped"],
17
+ "__STYXTYPE__": typing.Literal["mri_validate_skull_stripped"],
18
18
  "mri_reference": InputPathType,
19
19
  "mri_test": InputPathType,
20
20
  "weight": float,
niwrap_freesurfer/freesurfer/mri_vessel_segment.py CHANGED
@@ -14,7 +14,7 @@ MRI_VESSEL_SEGMENT_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriVesselSegmentParameters = typing.TypedDict('MriVesselSegmentParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_vessel_segment"],
17
+ "__STYXTYPE__": typing.Literal["mri_vessel_segment"],
18
18
  "t1_image": InputPathType,
19
19
  "t2_image": InputPathType,
20
20
  "aseg_file": InputPathType,
niwrap_freesurfer/freesurfer/mri_vol2label.py CHANGED
@@ -14,7 +14,7 @@ MRI_VOL2LABEL_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriVol2labelParameters = typing.TypedDict('MriVol2labelParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_vol2label"],
17
+ "__STYXTYPE__": typing.Literal["mri_vol2label"],
18
18
  "input": InputPathType,
19
19
  "label_id": typing.NotRequired[float | None],
20
20
  "threshold": typing.NotRequired[float | None],
niwrap_freesurfer/freesurfer/mri_vol2surf.py CHANGED
@@ -14,7 +14,7 @@ MRI_VOL2SURF_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriVol2surfParameters = typing.TypedDict('MriVol2surfParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_vol2surf"],
17
+ "__STYXTYPE__": typing.Literal["mri_vol2surf"],
18
18
  "input_volume": InputPathType,
19
19
  "registration_file": InputPathType,
20
20
  "output_path": str,
niwrap_freesurfer/freesurfer/mri_vol2vol.py CHANGED
@@ -14,7 +14,7 @@ MRI_VOL2VOL_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriVol2volParameters = typing.TypedDict('MriVol2volParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_vol2vol"],
17
+ "__STYXTYPE__": typing.Literal["mri_vol2vol"],
18
18
  "movvol": InputPathType,
19
19
  "targvol": InputPathType,
20
20
  "outvol": InputPathType,
niwrap_freesurfer/freesurfer/mri_volcluster.py CHANGED
@@ -14,7 +14,7 @@ MRI_VOLCLUSTER_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriVolclusterParameters = typing.TypedDict('MriVolclusterParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_volcluster"],
17
+ "__STYXTYPE__": typing.Literal["mri_volcluster"],
18
18
  "input_file": InputPathType,
19
19
  "summary_file": typing.NotRequired[str | None],
20
20
  "output_volid": typing.NotRequired[str | None],
niwrap_freesurfer/freesurfer/mri_voldiff.py CHANGED
@@ -14,7 +14,7 @@ MRI_VOLDIFF_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriVoldiffParameters = typing.TypedDict('MriVoldiffParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_voldiff"],
17
+ "__STYXTYPE__": typing.Literal["mri_voldiff"],
18
18
  "volume1": InputPathType,
19
19
  "volume2": InputPathType,
20
20
  "vox2ras_thresh": typing.NotRequired[float | None],
niwrap_freesurfer/freesurfer/mri_volsynth.py CHANGED
@@ -14,7 +14,7 @@ MRI_VOLSYNTH_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriVolsynthParameters = typing.TypedDict('MriVolsynthParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_volsynth"],
17
+ "__STYXTYPE__": typing.Literal["mri_volsynth"],
18
18
  "output_volid": str,
19
19
  "template": typing.NotRequired[str | None],
20
20
  "nframes": typing.NotRequired[float | None],
niwrap_freesurfer/freesurfer/mri_warp_convert.py CHANGED
@@ -14,7 +14,7 @@ MRI_WARP_CONVERT_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriWarpConvertParameters = typing.TypedDict('MriWarpConvertParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_warp_convert"],
17
+ "__STYXTYPE__": typing.Literal["mri_warp_convert"],
18
18
  "inm3z": typing.NotRequired[InputPathType | None],
19
19
  "infsl": typing.NotRequired[InputPathType | None],
20
20
  "inlps": typing.NotRequired[InputPathType | None],
niwrap_freesurfer/freesurfer/mri_watershed.py CHANGED
@@ -14,7 +14,7 @@ MRI_WATERSHED_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriWatershedParameters = typing.TypedDict('MriWatershedParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_watershed"],
17
+ "__STYXTYPE__": typing.Literal["mri_watershed"],
18
18
  "input_volume": InputPathType,
19
19
  "output_volume": str,
20
20
  "weight": typing.NotRequired[float | None],
niwrap_freesurfer/freesurfer/mri_wbc.py CHANGED
@@ -14,7 +14,7 @@ MRI_WBC_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriWbcParameters = typing.TypedDict('MriWbcParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_wbc"],
17
+ "__STYXTYPE__": typing.Literal["mri_wbc"],
18
18
  "functional_volume": InputPathType,
19
19
  "volume_mask": typing.NotRequired[InputPathType | None],
20
20
  "lh_functional_surface": InputPathType,
niwrap_freesurfer/freesurfer/mri_xvolavg.py CHANGED
@@ -14,7 +14,7 @@ MRI_XVOLAVG_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriXvolavgParameters = typing.TypedDict('MriXvolavgParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_xvolavg"],
17
+ "__STYXTYPE__": typing.Literal["mri_xvolavg"],
18
18
  "input_volumes": list[InputPathType],
19
19
  "vol_type": str,
20
20
  "output_volume": str,
niwrap_freesurfer/freesurfer/mri_z2p.py CHANGED
@@ -14,7 +14,7 @@ MRI_Z2P_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MriZ2pParameters = typing.TypedDict('MriZ2pParameters', {
17
- "__STYX_TYPE__": typing.Literal["mri_z2p"],
17
+ "__STYXTYPE__": typing.Literal["mri_z2p"],
18
18
  "z_volume": InputPathType,
19
19
  "p_volume": str,
20
20
  "sig_volume": str,
niwrap_freesurfer/freesurfer/mris2rgb.py CHANGED
@@ -14,7 +14,7 @@ MRIS2RGB_METADATA = Metadata(
14
14
 
15
15
 
16
16
  Mris2rgbParameters = typing.TypedDict('Mris2rgbParameters', {
17
- "__STYX_TYPE__": typing.Literal["mris2rgb"],
17
+ "__STYXTYPE__": typing.Literal["mris2rgb"],
18
18
  "library_path": str,
19
19
  })
20
20
 
niwrap_freesurfer/freesurfer/mris_aa_shrinkwrap.py CHANGED
@@ -14,7 +14,7 @@ MRIS_AA_SHRINKWRAP_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MrisAaShrinkwrapParameters = typing.TypedDict('MrisAaShrinkwrapParameters', {
17
- "__STYX_TYPE__": typing.Literal["mris_AA_shrinkwrap"],
17
+ "__STYXTYPE__": typing.Literal["mris_AA_shrinkwrap"],
18
18
  "t1_vol": InputPathType,
19
19
  "pd_vol": InputPathType,
20
20
  "output_dir": str,
niwrap_freesurfer/freesurfer/mris_add_template.py CHANGED
@@ -14,7 +14,7 @@ MRIS_ADD_TEMPLATE_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MrisAddTemplateParameters = typing.TypedDict('MrisAddTemplateParameters', {
17
- "__STYX_TYPE__": typing.Literal["mris_add_template"],
17
+ "__STYXTYPE__": typing.Literal["mris_add_template"],
18
18
  "placeholder_input": typing.NotRequired[str | None],
19
19
  })
20
20
 
niwrap_freesurfer/freesurfer/mris_anatomical_stats.py CHANGED
@@ -14,7 +14,7 @@ MRIS_ANATOMICAL_STATS_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MrisAnatomicalStatsParameters = typing.TypedDict('MrisAnatomicalStatsParameters', {
17
- "__STYX_TYPE__": typing.Literal["mris_anatomical_stats"],
17
+ "__STYXTYPE__": typing.Literal["mris_anatomical_stats"],
18
18
  "subjectname": str,
19
19
  "hemisphere": str,
20
20
  "surfacename": typing.NotRequired[str | None],
niwrap_freesurfer/freesurfer/mris_annot_diff.py CHANGED
@@ -14,7 +14,7 @@ MRIS_ANNOT_DIFF_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MrisAnnotDiffParameters = typing.TypedDict('MrisAnnotDiffParameters', {
17
- "__STYX_TYPE__": typing.Literal["mris_annot_diff"],
17
+ "__STYXTYPE__": typing.Literal["mris_annot_diff"],
18
18
  "annot1": InputPathType,
19
19
  "annot2": InputPathType,
20
20
  "diff_ctab": bool,
niwrap_freesurfer/freesurfer/mris_annot_to_segmentation.py CHANGED
@@ -14,7 +14,7 @@ MRIS_ANNOT_TO_SEGMENTATION_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MrisAnnotToSegmentationParameters = typing.TypedDict('MrisAnnotToSegmentationParameters', {
17
- "__STYX_TYPE__": typing.Literal["mris_annot_to_segmentation"],
17
+ "__STYXTYPE__": typing.Literal["mris_annot_to_segmentation"],
18
18
  "subject_name": str,
19
19
  "hemi": str,
20
20
  "surface": str,
niwrap_freesurfer/freesurfer/mris_apply_reg.py CHANGED
@@ -14,7 +14,7 @@ MRIS_APPLY_REG_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MrisApplyRegParameters = typing.TypedDict('MrisApplyRegParameters', {
17
- "__STYX_TYPE__": typing.Literal["mris_apply_reg"],
17
+ "__STYXTYPE__": typing.Literal["mris_apply_reg"],
18
18
  "src_input": InputPathType,
19
19
  "trg_output": str,
20
20
  "streg_pair": str,
niwrap_freesurfer/freesurfer/mris_autodet_gwstats.py CHANGED
@@ -14,7 +14,7 @@ MRIS_AUTODET_GWSTATS_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MrisAutodetGwstatsParameters = typing.TypedDict('MrisAutodetGwstatsParameters', {
17
- "__STYX_TYPE__": typing.Literal["mris_autodet_gwstats"],
17
+ "__STYXTYPE__": typing.Literal["mris_autodet_gwstats"],
18
18
  "output_file": str,
19
19
  "t1w_volume": InputPathType,
20
20
  "wm_volume": InputPathType,
niwrap_freesurfer/freesurfer/mris_average_curvature.py CHANGED
@@ -14,7 +14,7 @@ MRIS_AVERAGE_CURVATURE_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MrisAverageCurvatureParameters = typing.TypedDict('MrisAverageCurvatureParameters', {
17
- "__STYX_TYPE__": typing.Literal["mris_average_curvature"],
17
+ "__STYXTYPE__": typing.Literal["mris_average_curvature"],
18
18
  "input_curvature_file": InputPathType,
19
19
  "hemi": str,
20
20
  "surface": str,
niwrap_freesurfer/freesurfer/mris_ba_segment.py CHANGED
@@ -14,7 +14,7 @@ MRIS_BA_SEGMENT_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MrisBaSegmentParameters = typing.TypedDict('MrisBaSegmentParameters', {
17
- "__STYX_TYPE__": typing.Literal["mris_BA_segment"],
17
+ "__STYXTYPE__": typing.Literal["mris_BA_segment"],
18
18
  "surface": InputPathType,
19
19
  "profiles": InputPathType,
20
20
  "prior_label": InputPathType,
niwrap_freesurfer/freesurfer/mris_ca_deform.py CHANGED
@@ -14,7 +14,7 @@ MRIS_CA_DEFORM_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MrisCaDeformParameters = typing.TypedDict('MrisCaDeformParameters', {
17
- "__STYX_TYPE__": typing.Literal["mris_ca_deform"],
17
+ "__STYXTYPE__": typing.Literal["mris_ca_deform"],
18
18
  "input_surface": InputPathType,
19
19
  "label_vol": InputPathType,
20
20
  "transform": InputPathType,
niwrap_freesurfer/freesurfer/mris_ca_label.py CHANGED
@@ -14,7 +14,7 @@ MRIS_CA_LABEL_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MrisCaLabelParameters = typing.TypedDict('MrisCaLabelParameters', {
17
- "__STYX_TYPE__": typing.Literal["mris_ca_label"],
17
+ "__STYXTYPE__": typing.Literal["mris_ca_label"],
18
18
  "subject": str,
19
19
  "hemi": str,
20
20
  "canonsurf": InputPathType,
niwrap_freesurfer/freesurfer/mris_ca_train.py CHANGED
@@ -14,7 +14,7 @@ MRIS_CA_TRAIN_METADATA = Metadata(
14
14
 
15
15
 
16
16
  MrisCaTrainParameters = typing.TypedDict('MrisCaTrainParameters', {
17
- "__STYX_TYPE__": typing.Literal["mris_ca_train"],
17
+ "__STYXTYPE__": typing.Literal["mris_ca_train"],
18
18
  "hemi": str,
19
19
  "canonsurf": InputPathType,
20
20
  "annot_file": InputPathType,