niwrap-freesurfer 0.5.3__py3-none-any.whl → 0.6.0__py3-none-any.whl
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- niwrap_freesurfer/freesurfer/analyzeto4dfp.py +1 -1
- niwrap_freesurfer/freesurfer/anatomi_cuts_utils.py +1 -1
- niwrap_freesurfer/freesurfer/annot2std.py +1 -1
- niwrap_freesurfer/freesurfer/ants_denoise_image_fs.py +1 -1
- niwrap_freesurfer/freesurfer/ants_n4_bias_field_correction_fs.py +1 -1
- niwrap_freesurfer/freesurfer/aparc2feat.py +1 -1
- niwrap_freesurfer/freesurfer/aparc_stats_aseg.py +1 -1
- niwrap_freesurfer/freesurfer/aparcstats2table.py +1 -1
- niwrap_freesurfer/freesurfer/aparcstatsdiff.py +1 -1
- niwrap_freesurfer/freesurfer/apas2aseg.py +1 -1
- niwrap_freesurfer/freesurfer/aseg2feat.py +1 -1
- niwrap_freesurfer/freesurfer/asegstats2table.py +1 -1
- niwrap_freesurfer/freesurfer/asegstatsdiff.py +1 -1
- niwrap_freesurfer/freesurfer/avi2talxfm.py +1 -1
- niwrap_freesurfer/freesurfer/bblabel.py +1 -1
- niwrap_freesurfer/freesurfer/bbmask.py +1 -1
- niwrap_freesurfer/freesurfer/bbregister.py +1 -1
- niwrap_freesurfer/freesurfer/bedpostx_mgh.py +1 -1
- niwrap_freesurfer/freesurfer/beta2sxa.py +1 -1
- niwrap_freesurfer/freesurfer/biasfield.py +1 -1
- niwrap_freesurfer/freesurfer/bmedits2surf.py +1 -1
- niwrap_freesurfer/freesurfer/brec.py +1 -1
- niwrap_freesurfer/freesurfer/browse_minc_header_tcl.py +1 -1
- niwrap_freesurfer/freesurfer/bugr.py +1 -1
- niwrap_freesurfer/freesurfer/build_desikan_killiany_gcs_csh.py +1 -1
- niwrap_freesurfer/freesurfer/cblumwmgyri.py +1 -1
- niwrap_freesurfer/freesurfer/check_mcr_sh.py +1 -1
- niwrap_freesurfer/freesurfer/compute_interrater_variability_csh.py +1 -1
- niwrap_freesurfer/freesurfer/compute_label_volumes_csh.py +69 -27
- niwrap_freesurfer/freesurfer/compute_vox2vox.py +1 -1
- niwrap_freesurfer/freesurfer/conf2hires.py +1 -1
- niwrap_freesurfer/freesurfer/connected_components.py +1 -1
- niwrap_freesurfer/freesurfer/cor_to_minc.py +1 -1
- niwrap_freesurfer/freesurfer/cp_dicom.py +1 -1
- niwrap_freesurfer/freesurfer/create_morph.py +1 -1
- niwrap_freesurfer/freesurfer/dcmdir_info_mgh.py +1 -1
- niwrap_freesurfer/freesurfer/dcmdjpeg_fs.py +1 -1
- niwrap_freesurfer/freesurfer/dcmdrle_fs.py +1 -1
- niwrap_freesurfer/freesurfer/dcmsplit.py +1 -1
- niwrap_freesurfer/freesurfer/dcmunpack.py +1 -1
- niwrap_freesurfer/freesurfer/deface_subject.py +1 -1
- niwrap_freesurfer/freesurfer/defect2seg.py +1 -1
- niwrap_freesurfer/freesurfer/defect_seg.py +1 -1
- niwrap_freesurfer/freesurfer/dicom_rename.py +1 -1
- niwrap_freesurfer/freesurfer/diffusion_utils.py +1 -1
- niwrap_freesurfer/freesurfer/dmri_anatomi_cuts.py +1 -1
- niwrap_freesurfer/freesurfer/dmri_bset.py +1 -1
- niwrap_freesurfer/freesurfer/dmri_colored_fa.py +1 -1
- niwrap_freesurfer/freesurfer/dmri_forrest.py +1 -1
- niwrap_freesurfer/freesurfer/dmri_group.py +1 -1
- niwrap_freesurfer/freesurfer/dmri_match.py +1 -1
- niwrap_freesurfer/freesurfer/dmri_mergepaths.py +1 -1
- niwrap_freesurfer/freesurfer/dmri_motion.py +1 -1
- niwrap_freesurfer/freesurfer/dmri_neighboring_regions.py +1 -1
- niwrap_freesurfer/freesurfer/dmri_paths.py +1 -1
- niwrap_freesurfer/freesurfer/dmri_pathstats.py +1 -1
- niwrap_freesurfer/freesurfer/dmri_project_end_points.py +1 -1
- niwrap_freesurfer/freesurfer/dmri_save_histograms.py +1 -1
- niwrap_freesurfer/freesurfer/dmri_spline.py +1 -1
- niwrap_freesurfer/freesurfer/dmri_stats_ac.py +1 -1
- niwrap_freesurfer/freesurfer/dmri_train.py +1 -1
- niwrap_freesurfer/freesurfer/dmri_trk2trk.py +1 -1
- niwrap_freesurfer/freesurfer/dmri_vox2vox.py +1 -1
- niwrap_freesurfer/freesurfer/dt_recon.py +1 -1
- niwrap_freesurfer/freesurfer/export_gcam.py +1 -1
- niwrap_freesurfer/freesurfer/extract_seg_waveform.py +1 -1
- niwrap_freesurfer/freesurfer/exvivo_hemi_proc.py +1 -1
- niwrap_freesurfer/freesurfer/feat2segstats.py +1 -1
- niwrap_freesurfer/freesurfer/feat2surf.py +1 -1
- niwrap_freesurfer/freesurfer/fiducials_correction.py +1 -1
- niwrap_freesurfer/freesurfer/fix_subject_corrected_rh.py +1 -1
- niwrap_freesurfer/freesurfer/fix_subject_rh.py +1 -1
- niwrap_freesurfer/freesurfer/fixup_mni_paths.py +1 -1
- niwrap_freesurfer/freesurfer/flip_4dfp.py +1 -1
- niwrap_freesurfer/freesurfer/flirt_newdefault_20080811_sch.py +1 -1
- niwrap_freesurfer/freesurfer/fname2ext.py +1 -1
- niwrap_freesurfer/freesurfer/freeview.py +1 -1
- niwrap_freesurfer/freesurfer/fs_check_version.py +1 -1
- niwrap_freesurfer/freesurfer/fs_lib_check.py +1 -1
- niwrap_freesurfer/freesurfer/fs_print_help.py +1 -1
- niwrap_freesurfer/freesurfer/fs_run_from_mcr.py +1 -1
- niwrap_freesurfer/freesurfer/fs_spmreg_glnxa64.py +1 -1
- niwrap_freesurfer/freesurfer/fs_temp_dir.py +1 -1
- niwrap_freesurfer/freesurfer/fs_temp_file.py +1 -1
- niwrap_freesurfer/freesurfer/fs_time.py +1 -1
- niwrap_freesurfer/freesurfer/fs_tutorial_data.py +1 -1
- niwrap_freesurfer/freesurfer/fs_update.py +1 -1
- niwrap_freesurfer/freesurfer/fscalc.py +1 -1
- niwrap_freesurfer/freesurfer/fsdcmdecompress.py +1 -1
- niwrap_freesurfer/freesurfer/fsl_5_0_2_xyztrans_sch.py +1 -1
- niwrap_freesurfer/freesurfer/fsl_label2voxel.py +1 -1
- niwrap_freesurfer/freesurfer/fsl_rigid_register.py +1 -1
- niwrap_freesurfer/freesurfer/fsl_sub_mgh.py +1 -1
- niwrap_freesurfer/freesurfer/fslregister.py +1 -1
- niwrap_freesurfer/freesurfer/fspalm.py +1 -1
- niwrap_freesurfer/freesurfer/fsr_coreg.py +1 -1
- niwrap_freesurfer/freesurfer/fsr_getxopts.py +1 -1
- niwrap_freesurfer/freesurfer/fsr_import.py +1 -1
- niwrap_freesurfer/freesurfer/fsrealpath.py +1 -1
- niwrap_freesurfer/freesurfer/fsvglrun.py +1 -1
- niwrap_freesurfer/freesurfer/fvcompare.py +1 -1
- niwrap_freesurfer/freesurfer/gauss_4dfp.py +1 -1
- niwrap_freesurfer/freesurfer/gca_apply.py +1 -1
- niwrap_freesurfer/freesurfer/gcaprepone.py +1 -1
- niwrap_freesurfer/freesurfer/gcatrain.py +1 -1
- niwrap_freesurfer/freesurfer/gdcmconv_fs.py +1 -1
- niwrap_freesurfer/freesurfer/gems_compute_atlas_probs.py +1 -1
- niwrap_freesurfer/freesurfer/grad_unwarp.py +1 -1
- niwrap_freesurfer/freesurfer/groupstats.py +1 -1
- niwrap_freesurfer/freesurfer/groupstatsdiff.py +1 -1
- niwrap_freesurfer/freesurfer/gtmseg.py +1 -1
- niwrap_freesurfer/freesurfer/hiam_register.py +1 -1
- niwrap_freesurfer/freesurfer/histo_compute_joint_density.py +1 -1
- niwrap_freesurfer/freesurfer/histo_register_block.py +1 -1
- niwrap_freesurfer/freesurfer/histo_synthesize.py +1 -1
- niwrap_freesurfer/freesurfer/ico_supersample.py +1 -1
- niwrap_freesurfer/freesurfer/inflate_subject.py +1 -1
- niwrap_freesurfer/freesurfer/inflate_subject_lh.py +1 -1
- niwrap_freesurfer/freesurfer/inflate_subject_new_lh.py +1 -1
- niwrap_freesurfer/freesurfer/inflate_subject_sc.py +1 -1
- niwrap_freesurfer/freesurfer/irepifitvol.py +1 -1
- niwrap_freesurfer/freesurfer/irepifitvol_glnx64.py +1 -1
- niwrap_freesurfer/freesurfer/is_lta.py +1 -1
- niwrap_freesurfer/freesurfer/isolate_labels_csh.py +1 -1
- niwrap_freesurfer/freesurfer/isolate_labels_keeporigval_csh.py +1 -1
- niwrap_freesurfer/freesurfer/jkgcatrain.py +1 -1
- niwrap_freesurfer/freesurfer/label2flat.py +1 -1
- niwrap_freesurfer/freesurfer/label2patch.py +1 -1
- niwrap_freesurfer/freesurfer/label_elderly_subject.py +1 -1
- niwrap_freesurfer/freesurfer/label_subject.py +1 -1
- niwrap_freesurfer/freesurfer/label_subject_flash.py +1 -1
- niwrap_freesurfer/freesurfer/label_subject_mixed.py +1 -1
- niwrap_freesurfer/freesurfer/labels_disjoint.py +1 -1
- niwrap_freesurfer/freesurfer/labels_intersect.py +1 -1
- niwrap_freesurfer/freesurfer/labels_union.py +1 -1
- niwrap_freesurfer/freesurfer/list_otl_labels.py +1 -1
- niwrap_freesurfer/freesurfer/listsubj.py +1 -1
- niwrap_freesurfer/freesurfer/long_create_orig.py +1 -1
- niwrap_freesurfer/freesurfer/long_mris_slopes.py +1 -1
- niwrap_freesurfer/freesurfer/long_qdec_table.py +1 -1
- niwrap_freesurfer/freesurfer/long_stats_combine.py +1 -1
- niwrap_freesurfer/freesurfer/long_stats_slopes.py +1 -1
- niwrap_freesurfer/freesurfer/long_stats_tps.py +1 -1
- niwrap_freesurfer/freesurfer/long_submit_jobs.py +1 -1
- niwrap_freesurfer/freesurfer/long_submit_postproc.py +1 -1
- niwrap_freesurfer/freesurfer/longmc.py +1 -1
- niwrap_freesurfer/freesurfer/lpcregister.py +1 -1
- niwrap_freesurfer/freesurfer/lta_convert.py +1 -1
- niwrap_freesurfer/freesurfer/lta_diff.py +1 -1
- niwrap_freesurfer/freesurfer/make_average_subcort.py +1 -1
- niwrap_freesurfer/freesurfer/make_average_subject.py +1 -1
- niwrap_freesurfer/freesurfer/make_average_surface.py +1 -1
- niwrap_freesurfer/freesurfer/make_average_volume.py +1 -1
- niwrap_freesurfer/freesurfer/make_cortex_label.py +1 -1
- niwrap_freesurfer/freesurfer/make_folding_atlas.py +1 -1
- niwrap_freesurfer/freesurfer/make_hemi_mask.py +1 -1
- niwrap_freesurfer/freesurfer/make_segvol_table.py +1 -1
- niwrap_freesurfer/freesurfer/make_symmetric.py +1 -1
- niwrap_freesurfer/freesurfer/make_upright.py +1 -1
- niwrap_freesurfer/freesurfer/makevol.py +1 -1
- niwrap_freesurfer/freesurfer/map_all_labels.py +1 -1
- niwrap_freesurfer/freesurfer/map_all_labels_lh.py +1 -1
- niwrap_freesurfer/freesurfer/map_central_sulcus.py +1 -1
- niwrap_freesurfer/freesurfer/map_to_base.py +1 -1
- niwrap_freesurfer/freesurfer/meanval.py +1 -1
- niwrap_freesurfer/freesurfer/merge_stats_tables.py +1 -1
- niwrap_freesurfer/freesurfer/mergeseg.py +1 -1
- niwrap_freesurfer/freesurfer/mideface.py +1 -1
- niwrap_freesurfer/freesurfer/minc2seqinfo.py +1 -1
- niwrap_freesurfer/freesurfer/mkheadsurf.py +1 -1
- niwrap_freesurfer/freesurfer/mkima_index_tcl.py +1 -1
- niwrap_freesurfer/freesurfer/mkmnc_index_tcl.py +1 -1
- niwrap_freesurfer/freesurfer/mksubjdirs.py +1 -1
- niwrap_freesurfer/freesurfer/mksurfatlas.py +1 -1
- niwrap_freesurfer/freesurfer/mkxsubjreg.py +1 -1
- niwrap_freesurfer/freesurfer/mmppsp.py +1 -1
- niwrap_freesurfer/freesurfer/mni152reg.py +1 -1
- niwrap_freesurfer/freesurfer/morph_only_subject_lh.py +1 -1
- niwrap_freesurfer/freesurfer/morph_only_subject_rh.py +1 -1
- niwrap_freesurfer/freesurfer/morph_rgb_rh.py +1 -1
- niwrap_freesurfer/freesurfer/morph_tables_lh.py +1 -1
- niwrap_freesurfer/freesurfer/morph_tables_rh.py +1 -1
- niwrap_freesurfer/freesurfer/mri_3d_photo_recon.py +1 -1
- niwrap_freesurfer/freesurfer/mri_add_xform_to_header.py +1 -1
- niwrap_freesurfer/freesurfer/mri_align_long_csh.py +1 -1
- niwrap_freesurfer/freesurfer/mri_annotation2label.py +1 -1
- niwrap_freesurfer/freesurfer/mri_aparc2aseg.py +1 -1
- niwrap_freesurfer/freesurfer/mri_aparc2wmseg.py +1 -1
- niwrap_freesurfer/freesurfer/mri_apply_bias.py +1 -1
- niwrap_freesurfer/freesurfer/mri_average.py +1 -1
- niwrap_freesurfer/freesurfer/mri_binarize.py +1 -1
- niwrap_freesurfer/freesurfer/mri_brain_volume.py +1 -1
- niwrap_freesurfer/freesurfer/mri_brainvol_stats.py +1 -1
- niwrap_freesurfer/freesurfer/mri_ca_label.py +1 -1
- niwrap_freesurfer/freesurfer/mri_ca_normalize.py +1 -1
- niwrap_freesurfer/freesurfer/mri_ca_register.py +1 -1
- niwrap_freesurfer/freesurfer/mri_ca_tissue_parms.py +1 -1
- niwrap_freesurfer/freesurfer/mri_ca_train.py +1 -1
- niwrap_freesurfer/freesurfer/mri_cal_renormalize_gca.py +1 -1
- niwrap_freesurfer/freesurfer/mri_cc.py +1 -1
- niwrap_freesurfer/freesurfer/mri_cnr.py +1 -1
- niwrap_freesurfer/freesurfer/mri_compile_edits.py +1 -1
- niwrap_freesurfer/freesurfer/mri_compute_bias.py +1 -1
- niwrap_freesurfer/freesurfer/mri_compute_change_map.py +1 -1
- niwrap_freesurfer/freesurfer/mri_compute_distances.py +1 -1
- niwrap_freesurfer/freesurfer/mri_compute_layer_fractions.py +1 -1
- niwrap_freesurfer/freesurfer/mri_compute_overlap.py +1 -1
- niwrap_freesurfer/freesurfer/mri_compute_seg_overlap.py +1 -1
- niwrap_freesurfer/freesurfer/mri_compute_volume_fractions.py +1 -1
- niwrap_freesurfer/freesurfer/mri_compute_volume_intensities.py +1 -1
- niwrap_freesurfer/freesurfer/mri_concat.py +1 -1
- niwrap_freesurfer/freesurfer/mri_concatenate_gcam.py +1 -1
- niwrap_freesurfer/freesurfer/mri_concatenate_lta.py +1 -1
- niwrap_freesurfer/freesurfer/mri_convert.py +1 -1
- niwrap_freesurfer/freesurfer/mri_copy_params.py +1 -1
- niwrap_freesurfer/freesurfer/mri_copy_values.py +1 -1
- niwrap_freesurfer/freesurfer/mri_cor2label.py +1 -1
- niwrap_freesurfer/freesurfer/mri_coreg.py +1 -1
- niwrap_freesurfer/freesurfer/mri_create_t2combined.py +1 -1
- niwrap_freesurfer/freesurfer/mri_create_tests.py +1 -1
- niwrap_freesurfer/freesurfer/mri_cvs_check.py +1 -1
- niwrap_freesurfer/freesurfer/mri_cvs_data_copy.py +1 -1
- niwrap_freesurfer/freesurfer/mri_cvs_register.py +1 -1
- niwrap_freesurfer/freesurfer/mri_dct_align.py +1 -1
- niwrap_freesurfer/freesurfer/mri_dct_align_binary.py +1 -1
- niwrap_freesurfer/freesurfer/mri_deface.py +1 -1
- niwrap_freesurfer/freesurfer/mri_defacer.py +1 -1
- niwrap_freesurfer/freesurfer/mri_diff.py +1 -1
- niwrap_freesurfer/freesurfer/mri_distance_transform.py +1 -1
- niwrap_freesurfer/freesurfer/mri_easyreg.py +1 -1
- niwrap_freesurfer/freesurfer/mri_easywarp.py +1 -1
- niwrap_freesurfer/freesurfer/mri_edit_segmentation.py +1 -1
- niwrap_freesurfer/freesurfer/mri_edit_segmentation_with_surfaces.py +1 -1
- niwrap_freesurfer/freesurfer/mri_edit_wm_with_aseg.py +1 -1
- niwrap_freesurfer/freesurfer/mri_em_register.py +1 -1
- niwrap_freesurfer/freesurfer/mri_entowm_seg.py +1 -1
- niwrap_freesurfer/freesurfer/mri_evaluate_morph.py +1 -1
- niwrap_freesurfer/freesurfer/mri_extract.py +1 -1
- niwrap_freesurfer/freesurfer/mri_extract_label.py +1 -1
- niwrap_freesurfer/freesurfer/mri_extract_largest_cc.py +1 -1
- niwrap_freesurfer/freesurfer/mri_exvivo_norm.py +1 -1
- niwrap_freesurfer/freesurfer/mri_exvivo_strip.py +1 -1
- niwrap_freesurfer/freesurfer/mri_fdr.py +1 -1
- niwrap_freesurfer/freesurfer/mri_fieldsign.py +1 -1
- niwrap_freesurfer/freesurfer/mri_fill.py +1 -1
- niwrap_freesurfer/freesurfer/mri_fit_bias.py +1 -1
- niwrap_freesurfer/freesurfer/mri_fslmat_to_lta.py +1 -1
- niwrap_freesurfer/freesurfer/mri_funcvits.py +3 -3
- niwrap_freesurfer/freesurfer/mri_fuse_intensity_images.py +1 -1
- niwrap_freesurfer/freesurfer/mri_fuse_segmentations.py +1 -1
- niwrap_freesurfer/freesurfer/mri_fwhm.py +1 -1
- niwrap_freesurfer/freesurfer/mri_gca_ambiguous.py +1 -1
- niwrap_freesurfer/freesurfer/mri_gcut.py +1 -1
- niwrap_freesurfer/freesurfer/mri_gdfglm.py +1 -1
- niwrap_freesurfer/freesurfer/mri_glmfit.py +1 -1
- niwrap_freesurfer/freesurfer/mri_glmfit_sim.py +1 -1
- niwrap_freesurfer/freesurfer/mri_gradient_info.py +1 -1
- niwrap_freesurfer/freesurfer/mri_gradunwarp.py +1 -1
- niwrap_freesurfer/freesurfer/mri_gtmpvc.py +1 -1
- niwrap_freesurfer/freesurfer/mri_gtmseg.py +1 -1
- niwrap_freesurfer/freesurfer/mri_hausdorff_dist.py +1 -1
- niwrap_freesurfer/freesurfer/mri_head.py +1 -1
- niwrap_freesurfer/freesurfer/mri_hires_register.py +1 -1
- niwrap_freesurfer/freesurfer/mri_histo_eq.py +1 -1
- niwrap_freesurfer/freesurfer/mri_info.py +1 -1
- niwrap_freesurfer/freesurfer/mri_jacobian.py +1 -1
- niwrap_freesurfer/freesurfer/mri_joint_density.py +1 -1
- niwrap_freesurfer/freesurfer/mri_label2label.py +1 -1
- niwrap_freesurfer/freesurfer/mri_label2vol.py +1 -1
- niwrap_freesurfer/freesurfer/mri_label_histo.py +1 -1
- niwrap_freesurfer/freesurfer/mri_label_vals.py +1 -1
- niwrap_freesurfer/freesurfer/mri_label_volume.py +1 -1
- niwrap_freesurfer/freesurfer/mri_linear_align_binary.py +1 -1
- niwrap_freesurfer/freesurfer/mri_linear_register.py +1 -1
- niwrap_freesurfer/freesurfer/mri_long_normalize.py +1 -1
- niwrap_freesurfer/freesurfer/mri_make_bem_surfaces.py +1 -1
- niwrap_freesurfer/freesurfer/mri_make_uchar.py +1 -1
- niwrap_freesurfer/freesurfer/mri_map_cpdat.py +1 -1
- niwrap_freesurfer/freesurfer/mri_maps2csd.py +1 -1
- niwrap_freesurfer/freesurfer/mri_mark_temporal_lobe.py +1 -1
- niwrap_freesurfer/freesurfer/mri_mask.py +1 -1
- niwrap_freesurfer/freesurfer/mri_matrix_multiply.py +1 -1
- niwrap_freesurfer/freesurfer/mri_mc.py +1 -1
- niwrap_freesurfer/freesurfer/mri_mcsim.py +1 -1
- niwrap_freesurfer/freesurfer/mri_mergelabels.py +1 -1
- niwrap_freesurfer/freesurfer/mri_mi.py +1 -1
- niwrap_freesurfer/freesurfer/mri_morphology.py +1 -1
- niwrap_freesurfer/freesurfer/mri_motion_correct.py +1 -1
- niwrap_freesurfer/freesurfer/mri_motion_correct2.py +1 -1
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- niwrap_freesurfer/freesurfer/tridec.py +1 -1
- niwrap_freesurfer/freesurfer/trk_tools.py +1 -1
- niwrap_freesurfer/freesurfer/unpack_ima1_tcl.py +1 -1
- niwrap_freesurfer/freesurfer/unpack_mnc_tcl.py +1 -1
- niwrap_freesurfer/freesurfer/unpackmincdir.py +1 -1
- niwrap_freesurfer/freesurfer/unpacksdcmdir.py +1 -1
- niwrap_freesurfer/freesurfer/v_3dvolreg_afni.py +1 -1
- niwrap_freesurfer/freesurfer/v_4dfptoanalyze.py +1 -1
- niwrap_freesurfer/freesurfer/ventfix.py +1 -1
- niwrap_freesurfer/freesurfer/vertexvol.py +1 -1
- niwrap_freesurfer/freesurfer/vno_match_check.py +1 -1
- niwrap_freesurfer/freesurfer/vol2segavg.py +1 -1
- niwrap_freesurfer/freesurfer/vol2subfield.py +1 -1
- niwrap_freesurfer/freesurfer/vol2symsurf.py +1 -1
- niwrap_freesurfer/freesurfer/vsm_smooth.py +1 -1
- niwrap_freesurfer/freesurfer/wfilemask.py +1 -1
- niwrap_freesurfer/freesurfer/wm_anat_snr.py +1 -1
- niwrap_freesurfer/freesurfer/wmedits2surf.py +1 -1
- niwrap_freesurfer/freesurfer/wmsaseg.py +1 -1
- niwrap_freesurfer/freesurfer/xcerebralseg.py +1 -1
- niwrap_freesurfer/freesurfer/xcorr.py +1 -1
- niwrap_freesurfer/freesurfer/xfmrot.py +1 -1
- niwrap_freesurfer/freesurfer/xhemireg.py +1 -1
- niwrap_freesurfer/freesurfer/xsanatreg.py +1 -1
- niwrap_freesurfer/freesurfer/zero_lt_4dfp.py +1 -1
- {niwrap_freesurfer-0.5.3.dist-info → niwrap_freesurfer-0.6.0.dist-info}/METADATA +1 -1
- niwrap_freesurfer-0.6.0.dist-info/RECORD +700 -0
- niwrap_freesurfer-0.5.3.dist-info/RECORD +0 -700
- {niwrap_freesurfer-0.5.3.dist-info → niwrap_freesurfer-0.6.0.dist-info}/WHEEL +0 -0
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@@ -6,7 +6,7 @@ import pathlib
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ANALYZETO4DFP_METADATA = Metadata(
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id="
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id="991ffef88bef8e5d81444f5958c1c7d3e22644f0.boutiques",
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name="analyzeto4dfp",
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package="freesurfer",
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container_image_tag="freesurfer/freesurfer:7.4.1",
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ANATOMI_CUTS_UTILS_METADATA = Metadata(
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id="
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id="5b8fc2fbd044825ca8524543fcf4b4b3d56cb1f7.boutiques",
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name="anatomiCutsUtils",
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package="freesurfer",
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from styxdefs import *
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ANNOT2STD_METADATA = Metadata(
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id="
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id="94260c16cb751cafe61816e78c1cd15d1558bf0f.boutiques",
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name="annot2std",
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package="freesurfer",
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from styxdefs import *
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ANTS_DENOISE_IMAGE_FS_METADATA = Metadata(
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id="
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id="ceaab64d93fccf1f1155efcaaae5de0e2ed14132.boutiques",
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name="AntsDenoiseImageFs",
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package="freesurfer",
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from styxdefs import *
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ANTS_N4_BIAS_FIELD_CORRECTION_FS_METADATA = Metadata(
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id="
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id="fa3c503d811c832b99fa1f69e112206d024886d1.boutiques",
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name="AntsN4BiasFieldCorrectionFs",
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package="freesurfer",
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from styxdefs import *
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APARC2FEAT_METADATA = Metadata(
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id="
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id="53160d8704e92c1e9f62f27dba6616b608c7216b.boutiques",
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name="aparc2feat",
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package="freesurfer",
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APARC_STATS_ASEG_METADATA = Metadata(
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id="
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id="360c0f479d9ecf69674e8fbf165f4e1174d824c3.boutiques",
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name="aparc_stats_aseg",
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package="freesurfer",
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APARCSTATS2TABLE_METADATA = Metadata(
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id="
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id="1521fea28c99f52d4d63d7ca1b13780658752d3a.boutiques",
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name="aparcstats2table",
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package="freesurfer",
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from styxdefs import *
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APARCSTATSDIFF_METADATA = Metadata(
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id="
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id="4a3d5285bb31b350d627388c14efaeed5f882361.boutiques",
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name="aparcstatsdiff",
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package="freesurfer",
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container_image_tag="freesurfer/freesurfer:7.4.1",
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from styxdefs import *
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APAS2ASEG_METADATA = Metadata(
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id="
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+
id="eda1865146654f4bd355ad2e45b11e2c26036db4.boutiques",
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name="apas2aseg",
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package="freesurfer",
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container_image_tag="freesurfer/freesurfer:7.4.1",
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from styxdefs import *
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ASEG2FEAT_METADATA = Metadata(
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id="
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+
id="b7b7dd7d021ba889f028fd69296eae3f1560ec42.boutiques",
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name="aseg2feat",
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package="freesurfer",
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container_image_tag="freesurfer/freesurfer:7.4.1",
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from styxdefs import *
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ASEGSTATS2TABLE_METADATA = Metadata(
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id="
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+
id="913ffe3689796073b891a61e20a937aa44732063.boutiques",
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name="asegstats2table",
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package="freesurfer",
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container_image_tag="freesurfer/freesurfer:7.4.1",
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from styxdefs import *
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ASEGSTATSDIFF_METADATA = Metadata(
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id="
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+
id="db6a58e5c841a394a7bf194df11a9bf8523b88c1.boutiques",
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name="asegstatsdiff",
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package="freesurfer",
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container_image_tag="freesurfer/freesurfer:7.4.1",
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from styxdefs import *
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AVI2TALXFM_METADATA = Metadata(
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id="
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+
id="dd49fcac45ac0aee8f33fc3c39f2335f058798ac.boutiques",
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name="avi2talxfm",
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package="freesurfer",
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container_image_tag="freesurfer/freesurfer:7.4.1",
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from styxdefs import *
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BBLABEL_METADATA = Metadata(
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id="
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+
id="d1293820501628cd990eec4b275ecca954c2d046.boutiques",
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name="bblabel",
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package="freesurfer",
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container_image_tag="freesurfer/freesurfer:7.4.1",
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@@ -6,7 +6,7 @@ import pathlib
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from styxdefs import *
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BBMASK_METADATA = Metadata(
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id="
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+
id="3655e677c7fb826f63ccb1bcc455303aa52c7b56.boutiques",
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name="bbmask",
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package="freesurfer",
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container_image_tag="freesurfer/freesurfer:7.4.1",
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@@ -6,7 +6,7 @@ import pathlib
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from styxdefs import *
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BBREGISTER_METADATA = Metadata(
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id="
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+
id="5afef238c6734753905291f538bd2eab731681c0.boutiques",
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name="bbregister",
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package="freesurfer",
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container_image_tag="freesurfer/freesurfer:7.4.1",
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@@ -6,7 +6,7 @@ import pathlib
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from styxdefs import *
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BEDPOSTX_MGH_METADATA = Metadata(
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id="
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+
id="3ed864ec81d1c034c4ff17b4f55cad7b918d2d91.boutiques",
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name="bedpostx_mgh",
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package="freesurfer",
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container_image_tag="freesurfer/freesurfer:7.4.1",
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@@ -6,7 +6,7 @@ import pathlib
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from styxdefs import *
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BETA2SXA_METADATA = Metadata(
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id="
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+
id="f0f822c3fdfc6946f2efbf9d1eba0fc23f0154a3.boutiques",
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name="beta2sxa",
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package="freesurfer",
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container_image_tag="freesurfer/freesurfer:7.4.1",
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@@ -6,7 +6,7 @@ import pathlib
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from styxdefs import *
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BIASFIELD_METADATA = Metadata(
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id="
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+
id="5981ee8ca338526bd3e95eb71c3b7956f4c7d239.boutiques",
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name="biasfield",
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package="freesurfer",
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container_image_tag="freesurfer/freesurfer:7.4.1",
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@@ -6,7 +6,7 @@ import pathlib
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from styxdefs import *
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BMEDITS2SURF_METADATA = Metadata(
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id="
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+
id="c1daef85bf5d51503b439d0cfd018ad263aba494.boutiques",
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name="bmedits2surf",
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package="freesurfer",
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container_image_tag="freesurfer/freesurfer:7.4.1",
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@@ -6,7 +6,7 @@ import pathlib
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from styxdefs import *
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BREC_METADATA = Metadata(
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id="
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+
id="b85a2d15360507de8faa909c425df2fb82e4ca9d.boutiques",
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name="brec",
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package="freesurfer",
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container_image_tag="freesurfer/freesurfer:7.4.1",
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@@ -6,7 +6,7 @@ import pathlib
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from styxdefs import *
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BROWSE_MINC_HEADER_TCL_METADATA = Metadata(
|
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-
id="
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+
id="22e391d58621f276bcf2d734a8c66b008bb55ba4.boutiques",
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name="browse-minc-header.tcl",
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package="freesurfer",
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container_image_tag="freesurfer/freesurfer:7.4.1",
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@@ -6,7 +6,7 @@ import pathlib
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6
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from styxdefs import *
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BUGR_METADATA = Metadata(
|
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id="
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+
id="c59ecc18f09513a64d6c410b4046dd59f641fd90.boutiques",
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name="bugr",
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package="freesurfer",
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container_image_tag="freesurfer/freesurfer:7.4.1",
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@@ -6,7 +6,7 @@ import pathlib
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6
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from styxdefs import *
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BUILD_DESIKAN_KILLIANY_GCS_CSH_METADATA = Metadata(
|
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|
-
id="
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|
+
id="5e5a2f630a4fc0d2ffc6f6330bdbd3389407c897.boutiques",
|
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name="build_desikan_killiany_gcs.csh",
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package="freesurfer",
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container_image_tag="freesurfer/freesurfer:7.4.1",
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@@ -6,7 +6,7 @@ import pathlib
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6
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from styxdefs import *
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CBLUMWMGYRI_METADATA = Metadata(
|
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-
id="
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+
id="564e3588afc9810c3dc5013f2e056c14a2f92213.boutiques",
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name="cblumwmgyri",
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package="freesurfer",
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container_image_tag="freesurfer/freesurfer:7.4.1",
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@@ -6,7 +6,7 @@ import pathlib
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6
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from styxdefs import *
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CHECK_MCR_SH_METADATA = Metadata(
|
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-
id="
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+
id="3cf223c7fdc62b166c1577a94bc2b4f19d6881da.boutiques",
|
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name="checkMCR.sh",
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package="freesurfer",
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container_image_tag="freesurfer/freesurfer:7.4.1",
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@@ -6,7 +6,7 @@ import pathlib
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from styxdefs import *
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COMPUTE_INTERRATER_VARIABILITY_CSH_METADATA = Metadata(
|
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-
id="
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|
+
id="7c673e67884e719ac415c4fda5f5ca418d13773d.boutiques",
|
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10
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name="compute_interrater_variability.csh",
|
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package="freesurfer",
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container_image_tag="freesurfer/freesurfer:7.4.1",
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@@ -6,19 +6,25 @@ import pathlib
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from styxdefs import *
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COMPUTE_LABEL_VOLUMES_CSH_METADATA = Metadata(
|
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|
-
id="
|
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|
+
id="868d89d16779dfaa8674d3cf6361c520a6cdcca9.boutiques",
|
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10
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name="compute_label_volumes.csh",
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package="freesurfer",
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container_image_tag="freesurfer/freesurfer:7.4.1",
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)
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ComputeLabelVolumesCshLabelLParameters = typing.TypedDict('ComputeLabelVolumesCshLabelLParameters', {
|
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"""
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"label_L": compute_label_volumes_csh_label_l_cargs,
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) -> ComputeLabelVolumesCshLabelLParameters:
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"""
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Build parameters.
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upper_l: The particular label to be analyzed (case-sensitive option).
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lower_l: The particular label to be analyzed (case-insensitive option).
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Returns:
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Parameter dictionary
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"""
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}
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return params
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def compute_label_volumes_csh_label_l_cargs(
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params: ComputeLabelVolumesCshLabelLParameters,
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execution: Execution,
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) -> list[str]:
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"""
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Build command-line arguments from parameters.
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Args:
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params: The parameters.
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execution: The execution object for resolving input paths.
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Returns:
|
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Command-line arguments.
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"""
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cargs.extend([
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"--L",
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params.get("upper_L")
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])
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if params.get("lower_L") is not None:
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cargs.extend([
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"--l",
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params.get("lower_L")
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])
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return cargs
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class ComputeLabelVolumesCshOutputs(typing.NamedTuple):
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"""
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Output object returned when calling `compute_label_volumes_csh(...)`.
|
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@@ -69,8 +126,7 @@ class ComputeLabelVolumesCshOutputs(typing.NamedTuple):
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def compute_label_volumes_csh_params(
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label_vol: InputPathType,
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output_file: str,
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label_l:
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label_l_1: str | None = None,
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label_l: ComputeLabelVolumesCshLabelLParameters | None = None,
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version: bool = False,
|
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help_: bool = False,
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|
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) -> ComputeLabelVolumesCshParameters:
|
|
@@ -80,9 +136,7 @@ def compute_label_volumes_csh_params(
|
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80
136
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Args:
|
|
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137
|
label_vol: Label volume to be analyzed.
|
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output_file: Text file where the results are written.
|
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|
-
label_l: The particular label to be analyzed
|
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-
label_l_1: The particular label to be analyzed (case-insensitive\
|
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|
-
option).
|
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+
label_l: The particular label to be analyzed.
|
|
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140
|
version: Print version and exit.
|
|
87
141
|
help_: Print help and exit.
|
|
88
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|
Returns:
|
|
@@ -96,9 +150,7 @@ def compute_label_volumes_csh_params(
|
|
|
96
150
|
"help": help_,
|
|
97
151
|
}
|
|
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if label_l is not None:
|
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|
-
params["
|
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100
|
-
if label_l_1 is not None:
|
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-
params["label_l_1"] = label_l_1
|
|
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+
params["label_L"] = label_l
|
|
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154
|
return params
|
|
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155
|
|
|
104
156
|
|
|
@@ -125,16 +177,8 @@ def compute_label_volumes_csh_cargs(
|
|
|
125
177
|
"--out",
|
|
126
178
|
params.get("output_file")
|
|
127
179
|
])
|
|
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|
-
if params.get("
|
|
129
|
-
cargs.extend([
|
|
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|
-
"--l",
|
|
131
|
-
params.get("label_l")
|
|
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|
-
])
|
|
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|
-
if params.get("label_l_1") is not None:
|
|
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|
-
cargs.extend([
|
|
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|
-
"--l",
|
|
136
|
-
params.get("label_l_1")
|
|
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|
-
])
|
|
180
|
+
if params.get("label_L") is not None:
|
|
181
|
+
cargs.extend(dyn_cargs(params.get("label_L")["__STYXTYPE__"])(params.get("label_L"), execution))
|
|
138
182
|
if params.get("version"):
|
|
139
183
|
cargs.append("--version")
|
|
140
184
|
if params.get("help"):
|
|
@@ -190,8 +234,7 @@ def compute_label_volumes_csh_execute(
|
|
|
190
234
|
def compute_label_volumes_csh(
|
|
191
235
|
label_vol: InputPathType,
|
|
192
236
|
output_file: str,
|
|
193
|
-
label_l:
|
|
194
|
-
label_l_1: str | None = None,
|
|
237
|
+
label_l: ComputeLabelVolumesCshLabelLParameters | None = None,
|
|
195
238
|
version: bool = False,
|
|
196
239
|
help_: bool = False,
|
|
197
240
|
runner: Runner | None = None,
|
|
@@ -207,9 +250,7 @@ def compute_label_volumes_csh(
|
|
|
207
250
|
Args:
|
|
208
251
|
label_vol: Label volume to be analyzed.
|
|
209
252
|
output_file: Text file where the results are written.
|
|
210
|
-
label_l: The particular label to be analyzed
|
|
211
|
-
label_l_1: The particular label to be analyzed (case-insensitive\
|
|
212
|
-
option).
|
|
253
|
+
label_l: The particular label to be analyzed.
|
|
213
254
|
version: Print version and exit.
|
|
214
255
|
help_: Print help and exit.
|
|
215
256
|
runner: Command runner.
|
|
@@ -222,7 +263,6 @@ def compute_label_volumes_csh(
|
|
|
222
263
|
label_vol=label_vol,
|
|
223
264
|
output_file=output_file,
|
|
224
265
|
label_l=label_l,
|
|
225
|
-
label_l_1=label_l_1,
|
|
226
266
|
version=version,
|
|
227
267
|
help_=help_,
|
|
228
268
|
)
|
|
@@ -231,8 +271,10 @@ def compute_label_volumes_csh(
|
|
|
231
271
|
|
|
232
272
|
__all__ = [
|
|
233
273
|
"COMPUTE_LABEL_VOLUMES_CSH_METADATA",
|
|
274
|
+
"ComputeLabelVolumesCshLabelLParameters",
|
|
234
275
|
"ComputeLabelVolumesCshOutputs",
|
|
235
276
|
"ComputeLabelVolumesCshParameters",
|
|
236
277
|
"compute_label_volumes_csh",
|
|
278
|
+
"compute_label_volumes_csh_label_l_params",
|
|
237
279
|
"compute_label_volumes_csh_params",
|
|
238
280
|
]
|
|
@@ -6,7 +6,7 @@ import pathlib
|
|
|
6
6
|
from styxdefs import *
|
|
7
7
|
|
|
8
8
|
COMPUTE_VOX2VOX_METADATA = Metadata(
|
|
9
|
-
id="
|
|
9
|
+
id="9a7bf87929e316ff71cbf7100a4c060f4d38576b.boutiques",
|
|
10
10
|
name="compute_vox2vox",
|
|
11
11
|
package="freesurfer",
|
|
12
12
|
container_image_tag="freesurfer/freesurfer:7.4.1",
|
|
@@ -6,7 +6,7 @@ import pathlib
|
|
|
6
6
|
from styxdefs import *
|
|
7
7
|
|
|
8
8
|
CONF2HIRES_METADATA = Metadata(
|
|
9
|
-
id="
|
|
9
|
+
id="539c4acfba831cfb4f99ac6d61aa594dba2bc3f2.boutiques",
|
|
10
10
|
name="conf2hires",
|
|
11
11
|
package="freesurfer",
|
|
12
12
|
container_image_tag="freesurfer/freesurfer:7.4.1",
|
|
@@ -6,7 +6,7 @@ import pathlib
|
|
|
6
6
|
from styxdefs import *
|
|
7
7
|
|
|
8
8
|
CONNECTED_COMPONENTS_METADATA = Metadata(
|
|
9
|
-
id="
|
|
9
|
+
id="b9d479aaa7ac641f9959d97c1f7c18cc18043629.boutiques",
|
|
10
10
|
name="connected_components",
|
|
11
11
|
package="freesurfer",
|
|
12
12
|
container_image_tag="freesurfer/freesurfer:7.4.1",
|
|
@@ -6,7 +6,7 @@ import pathlib
|
|
|
6
6
|
from styxdefs import *
|
|
7
7
|
|
|
8
8
|
COR_TO_MINC_METADATA = Metadata(
|
|
9
|
-
id="
|
|
9
|
+
id="15dda396a0f22d201e6574171b77090fc72b06a2.boutiques",
|
|
10
10
|
name="cor_to_minc",
|
|
11
11
|
package="freesurfer",
|
|
12
12
|
container_image_tag="freesurfer/freesurfer:7.4.1",
|
|
@@ -6,7 +6,7 @@ import pathlib
|
|
|
6
6
|
from styxdefs import *
|
|
7
7
|
|
|
8
8
|
CP_DICOM_METADATA = Metadata(
|
|
9
|
-
id="
|
|
9
|
+
id="a3b5658a53886c2046aff8ddfa60c01956982a5b.boutiques",
|
|
10
10
|
name="cp-dicom",
|
|
11
11
|
package="freesurfer",
|
|
12
12
|
container_image_tag="freesurfer/freesurfer:7.4.1",
|
|
@@ -6,7 +6,7 @@ import pathlib
|
|
|
6
6
|
from styxdefs import *
|
|
7
7
|
|
|
8
8
|
CREATE_MORPH_METADATA = Metadata(
|
|
9
|
-
id="
|
|
9
|
+
id="d00775e741e3933385d72fe876f856c711446cb8.boutiques",
|
|
10
10
|
name="createMorph",
|
|
11
11
|
package="freesurfer",
|
|
12
12
|
container_image_tag="freesurfer/freesurfer:7.4.1",
|
|
@@ -6,7 +6,7 @@ import pathlib
|
|
|
6
6
|
from styxdefs import *
|
|
7
7
|
|
|
8
8
|
DCMDIR_INFO_MGH_METADATA = Metadata(
|
|
9
|
-
id="
|
|
9
|
+
id="8a0c29bc82d0c5ee9d5b9085f7f1bd5a728df60b.boutiques",
|
|
10
10
|
name="dcmdir-info-mgh",
|
|
11
11
|
package="freesurfer",
|
|
12
12
|
container_image_tag="freesurfer/freesurfer:7.4.1",
|
|
@@ -6,7 +6,7 @@ import pathlib
|
|
|
6
6
|
from styxdefs import *
|
|
7
7
|
|
|
8
8
|
DCMDJPEG_FS_METADATA = Metadata(
|
|
9
|
-
id="
|
|
9
|
+
id="359bc973b8599706e77b1aca498ebac2ce7ef402.boutiques",
|
|
10
10
|
name="dcmdjpeg.fs",
|
|
11
11
|
package="freesurfer",
|
|
12
12
|
container_image_tag="freesurfer/freesurfer:7.4.1",
|
|
@@ -6,7 +6,7 @@ import pathlib
|
|
|
6
6
|
from styxdefs import *
|
|
7
7
|
|
|
8
8
|
DCMDRLE_FS_METADATA = Metadata(
|
|
9
|
-
id="
|
|
9
|
+
id="46c0ce2e6f9c8a200078216d5100f33419da71f7.boutiques",
|
|
10
10
|
name="dcmdrle.fs",
|
|
11
11
|
package="freesurfer",
|
|
12
12
|
container_image_tag="freesurfer/freesurfer:7.4.1",
|
|
@@ -6,7 +6,7 @@ import pathlib
|
|
|
6
6
|
from styxdefs import *
|
|
7
7
|
|
|
8
8
|
DCMSPLIT_METADATA = Metadata(
|
|
9
|
-
id="
|
|
9
|
+
id="32509a30d18a74c8ffaec50695d2c1f51a6cff31.boutiques",
|
|
10
10
|
name="dcmsplit",
|
|
11
11
|
package="freesurfer",
|
|
12
12
|
container_image_tag="freesurfer/freesurfer:7.4.1",
|
|
@@ -6,7 +6,7 @@ import pathlib
|
|
|
6
6
|
from styxdefs import *
|
|
7
7
|
|
|
8
8
|
DCMUNPACK_METADATA = Metadata(
|
|
9
|
-
id="
|
|
9
|
+
id="64a19ab70f6129ad53152ddeab602e5432759bab.boutiques",
|
|
10
10
|
name="dcmunpack",
|
|
11
11
|
package="freesurfer",
|
|
12
12
|
container_image_tag="freesurfer/freesurfer:7.4.1",
|
|
@@ -6,7 +6,7 @@ import pathlib
|
|
|
6
6
|
from styxdefs import *
|
|
7
7
|
|
|
8
8
|
DEFACE_SUBJECT_METADATA = Metadata(
|
|
9
|
-
id="
|
|
9
|
+
id="89832befbb0be4ec4bfd9bda31d48569152b4136.boutiques",
|
|
10
10
|
name="deface_subject",
|
|
11
11
|
package="freesurfer",
|
|
12
12
|
container_image_tag="freesurfer/freesurfer:7.4.1",
|
|
@@ -6,7 +6,7 @@ import pathlib
|
|
|
6
6
|
from styxdefs import *
|
|
7
7
|
|
|
8
8
|
DEFECT2SEG_METADATA = Metadata(
|
|
9
|
-
id="
|
|
9
|
+
id="ee34539fd2b9014ec765deedfc67dab265d637bf.boutiques",
|
|
10
10
|
name="defect2seg",
|
|
11
11
|
package="freesurfer",
|
|
12
12
|
container_image_tag="freesurfer/freesurfer:7.4.1",
|
|
@@ -6,7 +6,7 @@ import pathlib
|
|
|
6
6
|
from styxdefs import *
|
|
7
7
|
|
|
8
8
|
DEFECT_SEG_METADATA = Metadata(
|
|
9
|
-
id="
|
|
9
|
+
id="9b31a7d103732cf28fbea5f8fb3d389448877d3a.boutiques",
|
|
10
10
|
name="defect-seg",
|
|
11
11
|
package="freesurfer",
|
|
12
12
|
container_image_tag="freesurfer/freesurfer:7.4.1",
|
|
@@ -6,7 +6,7 @@ import pathlib
|
|
|
6
6
|
from styxdefs import *
|
|
7
7
|
|
|
8
8
|
DICOM_RENAME_METADATA = Metadata(
|
|
9
|
-
id="
|
|
9
|
+
id="3fa82f4f7cfa0f517393cf4bbd8d9673564b758d.boutiques",
|
|
10
10
|
name="dicom-rename",
|
|
11
11
|
package="freesurfer",
|
|
12
12
|
container_image_tag="freesurfer/freesurfer:7.4.1",
|
|
@@ -6,7 +6,7 @@ import pathlib
|
|
|
6
6
|
from styxdefs import *
|
|
7
7
|
|
|
8
8
|
DIFFUSION_UTILS_METADATA = Metadata(
|
|
9
|
-
id="
|
|
9
|
+
id="7be8ebb9754439dfbaa88637615d07589e30bde0.boutiques",
|
|
10
10
|
name="diffusionUtils",
|
|
11
11
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package="freesurfer",
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12
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container_image_tag="freesurfer/freesurfer:7.4.1",
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@@ -6,7 +6,7 @@ import pathlib
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6
6
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from styxdefs import *
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7
7
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8
8
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DMRI_ANATOMI_CUTS_METADATA = Metadata(
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9
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-
id="
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9
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+
id="01e01361461867f93868da157078842ad7024286.boutiques",
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10
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name="dmri_AnatomiCuts",
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11
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package="freesurfer",
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12
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container_image_tag="freesurfer/freesurfer:7.4.1",
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