niwrap-freesurfer 0.5.1__py3-none-any.whl → 0.5.3__py3-none-any.whl

niwrap_freesurfer/freesurfer/mri_z2p.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 MRI_Z2P_METADATA = Metadata(
-    id="993304b1f6f275d376d70048d9e4d541fe6daff2.boutiques",
+    id="78dfd44d5447e6090f81e24d6551a8f322082fcf.boutiques",
     name="mri_z2p",
     package="freesurfer",
     container_image_tag="freesurfer/freesurfer:7.4.1",
@@ -24,6 +24,10 @@ MriZ2pParameters = typing.TypedDict('MriZ2pParameters', {
     "signed": bool,
     "feat": typing.NotRequired[str | None],
     "feat_format": typing.NotRequired[str | None],
+    "nii_format": bool,
+    "niigz_format": bool,
+    "mgh_format": bool,
+    "mgz_format": bool,
     "img_format": bool,
     "debug": bool,
     "check_opts": bool,
@@ -84,6 +88,10 @@ def mri_z2p_params(
     signed: bool = False,
     feat: str | None = None,
     feat_format: str | None = None,
+    nii_format: bool = False,
+    niigz_format: bool = False,
+    mgh_format: bool = False,
+    mgz_format: bool = False,
     img_format: bool = False,
     debug: bool = False,
     check_opts: bool = False,
@@ -102,6 +110,10 @@ def mri_z2p_params(
         feat: Convert all z-stats and zf-stats to sigs in the specified\
             directory.
         feat_format: Use specified format for output (e.g., nii, nii.gz, mgh).
+        nii_format: Use NIfTI output format.
+        niigz_format: Use compressed NIfTI output format.
+        mgh_format: Use MGH output format.
+        mgz_format: Use MGZ output format.
         img_format: Use Analyze output format.
         debug: Turn on debugging.
         check_opts: Don't run anything, just check options and exit.
@@ -116,6 +128,10 @@ def mri_z2p_params(
         "two_sided": two_sided,
         "one_sided": one_sided,
         "signed": signed,
+        "nii_format": nii_format,
+        "niigz_format": niigz_format,
+        "mgh_format": mgh_format,
+        "mgz_format": mgz_format,
         "img_format": img_format,
         "debug": debug,
         "check_opts": check_opts,
@@ -177,6 +193,14 @@ def mri_z2p_cargs(
             "--featfmt",
             params.get("feat_format")
         ])
+    if params.get("nii_format"):
+        cargs.append("--nii")
+    if params.get("niigz_format"):
+        cargs.append("--nii.gz")
+    if params.get("mgh_format"):
+        cargs.append("--mgh")
+    if params.get("mgz_format"):
+        cargs.append("--mgz")
     if params.get("img_format"):
         cargs.append("--img")
     if params.get("debug"):
@@ -241,6 +265,10 @@ def mri_z2p(
     signed: bool = False,
     feat: str | None = None,
     feat_format: str | None = None,
+    nii_format: bool = False,
+    niigz_format: bool = False,
+    mgh_format: bool = False,
+    mgz_format: bool = False,
     img_format: bool = False,
     debug: bool = False,
     check_opts: bool = False,
@@ -264,6 +292,10 @@ def mri_z2p(
         feat: Convert all z-stats and zf-stats to sigs in the specified\
             directory.
         feat_format: Use specified format for output (e.g., nii, nii.gz, mgh).
+        nii_format: Use NIfTI output format.
+        niigz_format: Use compressed NIfTI output format.
+        mgh_format: Use MGH output format.
+        mgz_format: Use MGZ output format.
         img_format: Use Analyze output format.
         debug: Turn on debugging.
         check_opts: Don't run anything, just check options and exit.
@@ -283,6 +315,10 @@ def mri_z2p(
         signed=signed,
         feat=feat,
         feat_format=feat_format,
+        nii_format=nii_format,
+        niigz_format=niigz_format,
+        mgh_format=mgh_format,
+        mgz_format=mgz_format,
         img_format=img_format,
         debug=debug,
         check_opts=check_opts,

niwrap_freesurfer/freesurfer/mris_add_template.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 MRIS_ADD_TEMPLATE_METADATA = Metadata(
-    id="cad5f1397d4979ef787014fa2412a1f0a10cfe8b.boutiques",
+    id="27b09d413ee029bc56c1679ca8d443e525504262.boutiques",
     name="mris_add_template",
     package="freesurfer",
     container_image_tag="freesurfer/freesurfer:7.4.1",
@@ -15,6 +15,7 @@ MRIS_ADD_TEMPLATE_METADATA = Metadata(
 
 MrisAddTemplateParameters = typing.TypedDict('MrisAddTemplateParameters', {
     "__STYX_TYPE__": typing.Literal["mris_add_template"],
+    "placeholder_input": typing.NotRequired[str | None],
 })
 
 
@@ -61,17 +62,21 @@ class MrisAddTemplateOutputs(typing.NamedTuple):
 
 
 def mris_add_template_params(
+    placeholder_input: str | None = None,
 ) -> MrisAddTemplateParameters:
     """
     Build parameters.
     
     Args:
+        placeholder_input: No inputs available as the tool has been removed.
     Returns:
         Parameter dictionary
     """
     params = {
         "__STYXTYPE__": "mris_add_template",
     }
+    if placeholder_input is not None:
+        params["placeholder_input"] = placeholder_input
     return params
 
 
@@ -90,6 +95,8 @@ def mris_add_template_cargs(
     """
     cargs = []
     cargs.append("mris_add_template")
+    if params.get("placeholder_input") is not None:
+        cargs.append(params.get("placeholder_input"))
     return cargs
 
 
@@ -138,6 +145,7 @@ def mris_add_template_execute(
 
 
 def mris_add_template(
+    placeholder_input: str | None = None,
     runner: Runner | None = None,
 ) -> MrisAddTemplateOutputs:
     """
@@ -148,6 +156,7 @@ def mris_add_template(
     URL: https://github.com/freesurfer/freesurfer
     
     Args:
+        placeholder_input: No inputs available as the tool has been removed.
         runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `MrisAddTemplateOutputs`).
@@ -155,6 +164,7 @@ def mris_add_template(
     runner = runner or get_global_runner()
     execution = runner.start_execution(MRIS_ADD_TEMPLATE_METADATA)
     params = mris_add_template_params(
+        placeholder_input=placeholder_input,
     )
     return mris_add_template_execute(params, execution)
 

niwrap_freesurfer/freesurfer/mris_apply_reg.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 MRIS_APPLY_REG_METADATA = Metadata(
-    id="cba2fa7ec9ece7dd7da7631135e083c0bc5bc503.boutiques",
+    id="9fde49bd7ee0afa537381c5ca9d9fe244176aed6.boutiques",
     name="mris_apply_reg",
     package="freesurfer",
     container_image_tag="freesurfer/freesurfer:7.4.1",
@@ -206,7 +206,6 @@ def mris_apply_reg_cargs(
         "--streg",
         params.get("streg_pair")
     ])
-    cargs.append("[STREG_ADDITIONAL...]")
     if params.get("src_label") is not None:
         cargs.extend([
             "--src-label",

niwrap_freesurfer/freesurfer/mris_curvature_stats.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 MRIS_CURVATURE_STATS_METADATA = Metadata(
-    id="471b147c9e4a5986d26ffc5619a8d1ade9f883a3.boutiques",
+    id="685caf4bb7ec6024d76b04e41ee81910490c86e0.boutiques",
     name="mris_curvature_stats",
     package="freesurfer",
     container_image_tag="freesurfer/freesurfer:7.4.1",
@@ -17,6 +17,41 @@ MrisCurvatureStatsParameters = typing.TypedDict('MrisCurvatureStatsParameters',
     "__STYX_TYPE__": typing.Literal["mris_curvature_stats"],
     "subject_name": str,
     "hemisphere": str,
+    "curvature_files": typing.NotRequired[list[InputPathType] | None],
+    "number_of_averages": typing.NotRequired[float | None],
+    "principal_curvatures": bool,
+    "discrete_method": bool,
+    "continuous_method": bool,
+    "signed_principals": bool,
+    "vertex_area_weigh": bool,
+    "vertex_area_normalize": bool,
+    "vertex_area_weigh_frac": bool,
+    "vertex_area_normalize_frac": bool,
+    "post_scale": typing.NotRequired[float | None],
+    "write_curvature_files": bool,
+    "shape_index": bool,
+    "output_file_stem": typing.NotRequired[str | None],
+    "histogram_bins": typing.NotRequired[float | None],
+    "percentage_histogram_bins": typing.NotRequired[float | None],
+    "bin_size": typing.NotRequired[float | None],
+    "bin_start_curvature": typing.NotRequired[float | None],
+    "bin_end_curvature": typing.NotRequired[float | None],
+    "label_file": typing.NotRequired[InputPathType | None],
+    "regional_percentages": bool,
+    "high_pass_filter": typing.NotRequired[float | None],
+    "low_pass_filter": typing.NotRequired[float | None],
+    "high_pass_filter_gaussian": typing.NotRequired[float | None],
+    "low_pass_filter_gaussian": typing.NotRequired[float | None],
+    "filter_label": typing.NotRequired[InputPathType | None],
+    "min_max_info": bool,
+    "normalize_curvature": bool,
+    "summary_condition": typing.NotRequired[str | None],
+    "min_curvature_scale": typing.NotRequired[float | None],
+    "max_curvature_scale": typing.NotRequired[float | None],
+    "scale_factor": typing.NotRequired[float | None],
+    "version": bool,
+    "set_zero_vertex": typing.NotRequired[float | None],
+    "max_ulps": typing.NotRequired[float | None],
 })
 
 
@@ -48,7 +83,6 @@ def dyn_outputs(
         Build outputs function.
     """
     return {
-        "mris_curvature_stats": mris_curvature_stats_outputs,
     }.get(t)
 
 
@@ -58,13 +92,46 @@ class MrisCurvatureStatsOutputs(typing.NamedTuple):
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
-    scaled_curvature_file: OutputPathType
-    """Scaled curvature file."""
 
 
 def mris_curvature_stats_params(
     subject_name: str,
     hemisphere: str,
+    curvature_files: list[InputPathType] | None = None,
+    number_of_averages: float | None = None,
+    principal_curvatures: bool = False,
+    discrete_method: bool = False,
+    continuous_method: bool = False,
+    signed_principals: bool = False,
+    vertex_area_weigh: bool = False,
+    vertex_area_normalize: bool = False,
+    vertex_area_weigh_frac: bool = False,
+    vertex_area_normalize_frac: bool = False,
+    post_scale: float | None = None,
+    write_curvature_files: bool = False,
+    shape_index: bool = False,
+    output_file_stem: str | None = None,
+    histogram_bins: float | None = None,
+    percentage_histogram_bins: float | None = None,
+    bin_size: float | None = None,
+    bin_start_curvature: float | None = None,
+    bin_end_curvature: float | None = None,
+    label_file: InputPathType | None = None,
+    regional_percentages: bool = False,
+    high_pass_filter: float | None = None,
+    low_pass_filter: float | None = None,
+    high_pass_filter_gaussian: float | None = None,
+    low_pass_filter_gaussian: float | None = None,
+    filter_label: InputPathType | None = None,
+    min_max_info: bool = False,
+    normalize_curvature: bool = False,
+    summary_condition: str | None = None,
+    min_curvature_scale: float | None = None,
+    max_curvature_scale: float | None = None,
+    scale_factor: float | None = None,
+    version: bool = False,
+    set_zero_vertex: float | None = None,
+    max_ulps: float | None = None,
 ) -> MrisCurvatureStatsParameters:
     """
     Build parameters.
@@ -72,6 +139,52 @@ def mris_curvature_stats_params(
     Args:
         subject_name: Subject name defined in the SUBJECTS_DIR.
         hemisphere: Hemisphere, can be 'lh' or 'rh'.
+        curvature_files: Optional list of curvature files to process.
+        number_of_averages: Average the curvature number of times.
+        principal_curvatures: Calculate principal curvatures and derived maps.
+        discrete_method: Use discrete calculation method for principal\
+            curvatures.
+        continuous_method: Use continuous calculation method for principal\
+            curvatures.
+        signed_principals: Assign signed max and min to principal curvature K1\
+            and K2.
+        vertex_area_weigh: Multiply curvature value by the area of its vertex.
+        vertex_area_normalize: Divide curvature value by the area of its\
+            vertex.
+        vertex_area_weigh_frac: Weigh curvature by the fractional vertex area.
+        vertex_area_normalize_frac: Normalize curvature by the fractional\
+            vertex area.
+        post_scale: Scale the mean and areaNorm integrals by a factor.
+        write_curvature_files: Write the calculated curvature values to files\
+            in FreeSurfer format.
+        shape_index: Calculate shape index despite potential atan issues.
+        output_file_stem: Output file stem for results.
+        histogram_bins: Number of bins for curvature histogram.
+        percentage_histogram_bins: Number of bins for percentage-based\
+            curvature histogram.
+        bin_size: Size of each histogram bin.
+        bin_start_curvature: Histogram bin start value.
+        bin_end_curvature: Histogram bin end value.
+        label_file: Label file to constrain statistics to a region.
+        regional_percentages: Report integral percentages relative to the\
+            region.
+        high_pass_filter: High pass filter for curvature values.
+        low_pass_filter: Low pass filter for curvature values.
+        high_pass_filter_gaussian: High pass filter for Gaussian curvature\
+            values.
+        low_pass_filter_gaussian: Low pass filter for Gaussian curvature\
+            values.
+        filter_label: Store processed surface vertices in a label file.
+        min_max_info: Output min/max information for the processed curvature.
+        normalize_curvature: Normalize the curvature before computation.
+        summary_condition: Write out stats as a summary condition.
+        min_curvature_scale: Scale curvature values between min and max\
+            curvature.
+        max_curvature_scale: End value for curvature scaling.
+        scale_factor: Scale curvature values with a factor.
+        version: Print out version number.
+        set_zero_vertex: Sets the curvature values at that index to zero.
+        max_ulps: Toggle a more rigorous floating point comparison operation.
     Returns:
         Parameter dictionary
     """
@@ -79,7 +192,63 @@ def mris_curvature_stats_params(
         "__STYXTYPE__": "mris_curvature_stats",
         "subject_name": subject_name,
         "hemisphere": hemisphere,
+        "principal_curvatures": principal_curvatures,
+        "discrete_method": discrete_method,
+        "continuous_method": continuous_method,
+        "signed_principals": signed_principals,
+        "vertex_area_weigh": vertex_area_weigh,
+        "vertex_area_normalize": vertex_area_normalize,
+        "vertex_area_weigh_frac": vertex_area_weigh_frac,
+        "vertex_area_normalize_frac": vertex_area_normalize_frac,
+        "write_curvature_files": write_curvature_files,
+        "shape_index": shape_index,
+        "regional_percentages": regional_percentages,
+        "min_max_info": min_max_info,
+        "normalize_curvature": normalize_curvature,
+        "version": version,
     }
+    if curvature_files is not None:
+        params["curvature_files"] = curvature_files
+    if number_of_averages is not None:
+        params["number_of_averages"] = number_of_averages
+    if post_scale is not None:
+        params["post_scale"] = post_scale
+    if output_file_stem is not None:
+        params["output_file_stem"] = output_file_stem
+    if histogram_bins is not None:
+        params["histogram_bins"] = histogram_bins
+    if percentage_histogram_bins is not None:
+        params["percentage_histogram_bins"] = percentage_histogram_bins
+    if bin_size is not None:
+        params["bin_size"] = bin_size
+    if bin_start_curvature is not None:
+        params["bin_start_curvature"] = bin_start_curvature
+    if bin_end_curvature is not None:
+        params["bin_end_curvature"] = bin_end_curvature
+    if label_file is not None:
+        params["label_file"] = label_file
+    if high_pass_filter is not None:
+        params["high_pass_filter"] = high_pass_filter
+    if low_pass_filter is not None:
+        params["low_pass_filter"] = low_pass_filter
+    if high_pass_filter_gaussian is not None:
+        params["high_pass_filter_gaussian"] = high_pass_filter_gaussian
+    if low_pass_filter_gaussian is not None:
+        params["low_pass_filter_gaussian"] = low_pass_filter_gaussian
+    if filter_label is not None:
+        params["filter_label"] = filter_label
+    if summary_condition is not None:
+        params["summary_condition"] = summary_condition
+    if min_curvature_scale is not None:
+        params["min_curvature_scale"] = min_curvature_scale
+    if max_curvature_scale is not None:
+        params["max_curvature_scale"] = max_curvature_scale
+    if scale_factor is not None:
+        params["scale_factor"] = scale_factor
+    if set_zero_vertex is not None:
+        params["set_zero_vertex"] = set_zero_vertex
+    if max_ulps is not None:
+        params["max_ulps"] = max_ulps
     return params
 
 
@@ -98,10 +267,138 @@ def mris_curvature_stats_cargs(
     """
     cargs = []
     cargs.append("mris_curvature_stats")
-    cargs.append("[OPTIONS]")
     cargs.append(params.get("subject_name"))
     cargs.append(params.get("hemisphere"))
-    cargs.append("[CURVFILE...]")
+    if params.get("curvature_files") is not None:
+        cargs.extend([execution.input_file(f) for f in params.get("curvature_files")])
+    if params.get("number_of_averages") is not None:
+        cargs.extend([
+            "-a",
+            str(params.get("number_of_averages"))
+        ])
+    if params.get("principal_curvatures"):
+        cargs.append("-G")
+    if params.get("discrete_method"):
+        cargs.append("--discrete")
+    if params.get("continuous_method"):
+        cargs.append("--continuous")
+    if params.get("signed_principals"):
+        cargs.append("--signedPrincipals")
+    if params.get("vertex_area_weigh"):
+        cargs.append("--vertexAreaWeigh")
+    if params.get("vertex_area_normalize"):
+        cargs.append("--vertexAreaNormalize")
+    if params.get("vertex_area_weigh_frac"):
+        cargs.append("--vertexAreaWeighFrac")
+    if params.get("vertex_area_normalize_frac"):
+        cargs.append("--vertexAreaNormalizeFrac")
+    if params.get("post_scale") is not None:
+        cargs.extend([
+            "--postScale",
+            str(params.get("post_scale"))
+        ])
+    if params.get("write_curvature_files"):
+        cargs.append("--writeCurvatureFiles")
+    if params.get("shape_index"):
+        cargs.append("--shapeIndex")
+    if params.get("output_file_stem") is not None:
+        cargs.extend([
+            "-o",
+            params.get("output_file_stem")
+        ])
+    if params.get("histogram_bins") is not None:
+        cargs.extend([
+            "-h",
+            str(params.get("histogram_bins"))
+        ])
+    if params.get("percentage_histogram_bins") is not None:
+        cargs.extend([
+            "-p",
+            str(params.get("percentage_histogram_bins"))
+        ])
+    if params.get("bin_size") is not None:
+        cargs.extend([
+            "-b",
+            str(params.get("bin_size"))
+        ])
+    if params.get("bin_start_curvature") is not None:
+        cargs.extend([
+            "-i",
+            str(params.get("bin_start_curvature"))
+        ])
+    if params.get("bin_end_curvature") is not None:
+        cargs.extend([
+            "-j",
+            str(params.get("bin_end_curvature"))
+        ])
+    if params.get("label_file") is not None:
+        cargs.extend([
+            "-l",
+            execution.input_file(params.get("label_file"))
+        ])
+    if params.get("regional_percentages"):
+        cargs.append("--regionalPercentages")
+    if params.get("high_pass_filter") is not None:
+        cargs.extend([
+            "--highPassFilter",
+            str(params.get("high_pass_filter"))
+        ])
+    if params.get("low_pass_filter") is not None:
+        cargs.extend([
+            "--lowPassFilter",
+            str(params.get("low_pass_filter"))
+        ])
+    if params.get("high_pass_filter_gaussian") is not None:
+        cargs.extend([
+            "--highPassFilterGaussian",
+            str(params.get("high_pass_filter_gaussian"))
+        ])
+    if params.get("low_pass_filter_gaussian") is not None:
+        cargs.extend([
+            "--lowPassFilterGaussian",
+            str(params.get("low_pass_filter_gaussian"))
+        ])
+    if params.get("filter_label") is not None:
+        cargs.extend([
+            "--filterLabel",
+            execution.input_file(params.get("filter_label"))
+        ])
+    if params.get("min_max_info"):
+        cargs.append("-m")
+    if params.get("normalize_curvature"):
+        cargs.append("-n")
+    if params.get("summary_condition") is not None:
+        cargs.extend([
+            "-s",
+            params.get("summary_condition")
+        ])
+    if params.get("min_curvature_scale") is not None:
+        cargs.extend([
+            "-d",
+            str(params.get("min_curvature_scale"))
+        ])
+    if params.get("max_curvature_scale") is not None:
+        cargs.extend([
+            "-e",
+            str(params.get("max_curvature_scale"))
+        ])
+    if params.get("scale_factor") is not None:
+        cargs.extend([
+            "-c",
+            str(params.get("scale_factor"))
+        ])
+    if params.get("version"):
+        cargs.append("-version")
+    if params.get("set_zero_vertex") is not None:
+        cargs.extend([
+            "-z",
+            str(params.get("set_zero_vertex"))
+        ])
+    if params.get("max_ulps") is not None:
+        cargs.extend([
+            "-q",
+            str(params.get("max_ulps"))
+        ])
     return cargs
 
 
@@ -120,7 +417,6 @@ def mris_curvature_stats_outputs(
     """
     ret = MrisCurvatureStatsOutputs(
         root=execution.output_file("."),
-        scaled_curvature_file=execution.output_file(params.get("subject_name") + "/surf/" + params.get("hemisphere") + ".[CURVATURE_FILES].scaled.crv"),
     )
     return ret
 
@@ -152,6 +448,41 @@ def mris_curvature_stats_execute(
 def mris_curvature_stats(
     subject_name: str,
     hemisphere: str,
+    curvature_files: list[InputPathType] | None = None,
+    number_of_averages: float | None = None,
+    principal_curvatures: bool = False,
+    discrete_method: bool = False,
+    continuous_method: bool = False,
+    signed_principals: bool = False,
+    vertex_area_weigh: bool = False,
+    vertex_area_normalize: bool = False,
+    vertex_area_weigh_frac: bool = False,
+    vertex_area_normalize_frac: bool = False,
+    post_scale: float | None = None,
+    write_curvature_files: bool = False,
+    shape_index: bool = False,
+    output_file_stem: str | None = None,
+    histogram_bins: float | None = None,
+    percentage_histogram_bins: float | None = None,
+    bin_size: float | None = None,
+    bin_start_curvature: float | None = None,
+    bin_end_curvature: float | None = None,
+    label_file: InputPathType | None = None,
+    regional_percentages: bool = False,
+    high_pass_filter: float | None = None,
+    low_pass_filter: float | None = None,
+    high_pass_filter_gaussian: float | None = None,
+    low_pass_filter_gaussian: float | None = None,
+    filter_label: InputPathType | None = None,
+    min_max_info: bool = False,
+    normalize_curvature: bool = False,
+    summary_condition: str | None = None,
+    min_curvature_scale: float | None = None,
+    max_curvature_scale: float | None = None,
+    scale_factor: float | None = None,
+    version: bool = False,
+    set_zero_vertex: float | None = None,
+    max_ulps: float | None = None,
     runner: Runner | None = None,
 ) -> MrisCurvatureStatsOutputs:
     """
@@ -164,6 +495,52 @@ def mris_curvature_stats(
     Args:
         subject_name: Subject name defined in the SUBJECTS_DIR.
         hemisphere: Hemisphere, can be 'lh' or 'rh'.
+        curvature_files: Optional list of curvature files to process.
+        number_of_averages: Average the curvature number of times.
+        principal_curvatures: Calculate principal curvatures and derived maps.
+        discrete_method: Use discrete calculation method for principal\
+            curvatures.
+        continuous_method: Use continuous calculation method for principal\
+            curvatures.
+        signed_principals: Assign signed max and min to principal curvature K1\
+            and K2.
+        vertex_area_weigh: Multiply curvature value by the area of its vertex.
+        vertex_area_normalize: Divide curvature value by the area of its\
+            vertex.
+        vertex_area_weigh_frac: Weigh curvature by the fractional vertex area.
+        vertex_area_normalize_frac: Normalize curvature by the fractional\
+            vertex area.
+        post_scale: Scale the mean and areaNorm integrals by a factor.
+        write_curvature_files: Write the calculated curvature values to files\
+            in FreeSurfer format.
+        shape_index: Calculate shape index despite potential atan issues.
+        output_file_stem: Output file stem for results.
+        histogram_bins: Number of bins for curvature histogram.
+        percentage_histogram_bins: Number of bins for percentage-based\
+            curvature histogram.
+        bin_size: Size of each histogram bin.
+        bin_start_curvature: Histogram bin start value.
+        bin_end_curvature: Histogram bin end value.
+        label_file: Label file to constrain statistics to a region.
+        regional_percentages: Report integral percentages relative to the\
+            region.
+        high_pass_filter: High pass filter for curvature values.
+        low_pass_filter: Low pass filter for curvature values.
+        high_pass_filter_gaussian: High pass filter for Gaussian curvature\
+            values.
+        low_pass_filter_gaussian: Low pass filter for Gaussian curvature\
+            values.
+        filter_label: Store processed surface vertices in a label file.
+        min_max_info: Output min/max information for the processed curvature.
+        normalize_curvature: Normalize the curvature before computation.
+        summary_condition: Write out stats as a summary condition.
+        min_curvature_scale: Scale curvature values between min and max\
+            curvature.
+        max_curvature_scale: End value for curvature scaling.
+        scale_factor: Scale curvature values with a factor.
+        version: Print out version number.
+        set_zero_vertex: Sets the curvature values at that index to zero.
+        max_ulps: Toggle a more rigorous floating point comparison operation.
         runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `MrisCurvatureStatsOutputs`).
@@ -173,6 +550,41 @@ def mris_curvature_stats(
     params = mris_curvature_stats_params(
         subject_name=subject_name,
         hemisphere=hemisphere,
+        curvature_files=curvature_files,
+        number_of_averages=number_of_averages,
+        principal_curvatures=principal_curvatures,
+        discrete_method=discrete_method,
+        continuous_method=continuous_method,
+        signed_principals=signed_principals,
+        vertex_area_weigh=vertex_area_weigh,
+        vertex_area_normalize=vertex_area_normalize,
+        vertex_area_weigh_frac=vertex_area_weigh_frac,
+        vertex_area_normalize_frac=vertex_area_normalize_frac,
+        post_scale=post_scale,
+        write_curvature_files=write_curvature_files,
+        shape_index=shape_index,
+        output_file_stem=output_file_stem,
+        histogram_bins=histogram_bins,
+        percentage_histogram_bins=percentage_histogram_bins,
+        bin_size=bin_size,
+        bin_start_curvature=bin_start_curvature,
+        bin_end_curvature=bin_end_curvature,
+        label_file=label_file,
+        regional_percentages=regional_percentages,
+        high_pass_filter=high_pass_filter,
+        low_pass_filter=low_pass_filter,
+        high_pass_filter_gaussian=high_pass_filter_gaussian,
+        low_pass_filter_gaussian=low_pass_filter_gaussian,
+        filter_label=filter_label,
+        min_max_info=min_max_info,
+        normalize_curvature=normalize_curvature,
+        summary_condition=summary_condition,
+        min_curvature_scale=min_curvature_scale,
+        max_curvature_scale=max_curvature_scale,
+        scale_factor=scale_factor,
+        version=version,
+        set_zero_vertex=set_zero_vertex,
+        max_ulps=max_ulps,
     )
     return mris_curvature_stats_execute(params, execution)