niwrap-afni 0.5.3__py3-none-any.whl → 0.6.0__py3-none-any.whl

niwrap_afni/afni/v_3d_anova2.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_ANOVA2_METADATA = Metadata(
-    id="ebf600e872cacd3686c204e18def40bac83877e7.boutiques",
+    id="1e8f032f3d875cc5a21e9d1448354842196442df.boutiques",
     name="3dANOVA2",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",

niwrap_afni/afni/v_3d_anova3.py

@@ -6,13 +6,27 @@ import pathlib
 from styxdefs import *
 
 V_3D_ANOVA3_METADATA = Metadata(
-    id="89d3a37a3aeb7f4c6c360f1bc16bdccd1f3a7f46.boutiques",
+    id="1e464f155335b3c9815ddb43161916b9ff1a4fe2.boutiques",
     name="3dANOVA3",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
 )
 
 
+V3dAnova3OutfileAbcontrParameters = typing.TypedDict('V3dAnova3OutfileAbcontrParameters', {
+    "__STYX_TYPE__": typing.Literal["outfile_abcontr"],
+    "outfile_abcontr": typing.NotRequired[str | None],
+    "outfile_Abcontr": typing.NotRequired[str | None],
+})
+
+
+V3dAnova3OutfileAbcontr1Parameters = typing.TypedDict('V3dAnova3OutfileAbcontr1Parameters', {
+    "__STYX_TYPE__": typing.Literal["outfile_abcontr_1"],
+    "outfile_abdiff": typing.NotRequired[str | None],
+    "outfile_Abdiff": typing.NotRequired[str | None],
+})
+
+
 V3dAnova3Parameters = typing.TypedDict('V3dAnova3Parameters', {
     "__STYX_TYPE__": typing.Literal["3dANOVA3"],
     "type": int,
@@ -41,8 +55,8 @@ V3dAnova3Parameters = typing.TypedDict('V3dAnova3Parameters', {
     "outfile_acontr": typing.NotRequired[str | None],
     "outfile_bcontr": typing.NotRequired[str | None],
     "outfile_ccontr": typing.NotRequired[str | None],
-    "outfile_Abcontr": typing.NotRequired[str | None],
-    "outfile_Abdiff": typing.NotRequired[str | None],
+    "outfile_abcontr": typing.NotRequired[V3dAnova3OutfileAbcontrParameters | None],
+    "outfile_abdiff": typing.NotRequired[V3dAnova3OutfileAbcontr1Parameters | None],
     "outfile_abmean": typing.NotRequired[str | None],
     "outfile_bucket": typing.NotRequired[str | None],
     "anova_options": typing.NotRequired[list[str] | None],
@@ -62,6 +76,8 @@ def dyn_cargs(
     """
     return {
         "3dANOVA3": v_3d_anova3_cargs,
+        "outfile_abcontr": v_3d_anova3_outfile_abcontr_cargs,
+        "outfile_abcontr_1": v_3d_anova3_outfile_abcontr_1_cargs,
     }.get(t)
 
 
@@ -81,6 +97,110 @@ def dyn_outputs(
     }.get(t)
 
 
+def v_3d_anova3_outfile_abcontr_params(
+    outfile_abcontr: str | None = None,
+    outfile_abcontr_: str | None = None,
+) -> V3dAnova3OutfileAbcontrParameters:
+    """
+    Build parameters.
+    
+    Args:
+        outfile_abcontr: Specify the output file for the interaction contrast\
+            results between A and B.
+        outfile_abcontr_: Specify the output file for the interaction contrast\
+            results between A and B (case-sensitive).
+    Returns:
+        Parameter dictionary
+    """
+    params = {
+        "__STYXTYPE__": "outfile_abcontr",
+    }
+    if outfile_abcontr is not None:
+        params["outfile_abcontr"] = outfile_abcontr
+    if outfile_abcontr_ is not None:
+        params["outfile_Abcontr"] = outfile_abcontr_
+    return params
+
+
+def v_3d_anova3_outfile_abcontr_cargs(
+    params: V3dAnova3OutfileAbcontrParameters,
+    execution: Execution,
+) -> list[str]:
+    """
+    Build command-line arguments from parameters.
+    
+    Args:
+        params: The parameters.
+        execution: The execution object for resolving input paths.
+    Returns:
+        Command-line arguments.
+    """
+    cargs = []
+    if params.get("outfile_abcontr") is not None:
+        cargs.extend([
+            "-aBcontr",
+            params.get("outfile_abcontr")
+        ])
+    if params.get("outfile_Abcontr") is not None:
+        cargs.extend([
+            "-Abcontr",
+            params.get("outfile_Abcontr")
+        ])
+    return cargs
+
+
+def v_3d_anova3_outfile_abcontr_1_params(
+    outfile_abdiff: str | None = None,
+    outfile_abdiff_: str | None = None,
+) -> V3dAnova3OutfileAbcontr1Parameters:
+    """
+    Build parameters.
+    
+    Args:
+        outfile_abdiff: Specify the output file for the interaction difference\
+            results between A and B.
+        outfile_abdiff_: Specify the output file for the interaction difference\
+            results between A and B (case-sensitive).
+    Returns:
+        Parameter dictionary
+    """
+    params = {
+        "__STYXTYPE__": "outfile_abcontr_1",
+    }
+    if outfile_abdiff is not None:
+        params["outfile_abdiff"] = outfile_abdiff
+    if outfile_abdiff_ is not None:
+        params["outfile_Abdiff"] = outfile_abdiff_
+    return params
+
+
+def v_3d_anova3_outfile_abcontr_1_cargs(
+    params: V3dAnova3OutfileAbcontr1Parameters,
+    execution: Execution,
+) -> list[str]:
+    """
+    Build command-line arguments from parameters.
+    
+    Args:
+        params: The parameters.
+        execution: The execution object for resolving input paths.
+    Returns:
+        Command-line arguments.
+    """
+    cargs = []
+    if params.get("outfile_abdiff") is not None:
+        cargs.extend([
+            "-aBdiff",
+            params.get("outfile_abdiff")
+        ])
+    if params.get("outfile_Abdiff") is not None:
+        cargs.extend([
+            "-Abdiff",
+            params.get("outfile_Abdiff")
+        ])
+    return cargs
+
+
 class V3dAnova3Outputs(typing.NamedTuple):
     """
     Output object returned when calling `v_3d_anova3(...)`.
@@ -134,8 +254,8 @@ def v_3d_anova3_params(
     outfile_acontr: str | None = None,
     outfile_bcontr: str | None = None,
     outfile_ccontr: str | None = None,
-    outfile_abcontr: str | None = None,
-    outfile_abdiff: str | None = None,
+    outfile_abcontr: V3dAnova3OutfileAbcontrParameters | None = None,
+    outfile_abdiff: V3dAnova3OutfileAbcontr1Parameters | None = None,
     outfile_abmean: str | None = None,
     outfile_bucket: str | None = None,
     anova_options: list[str] | None = None,
@@ -178,9 +298,9 @@ def v_3d_anova3_params(
         outfile_bcontr: Specify the output file for the B contrast results.
         outfile_ccontr: Specify the output file for the C contrast results.
         outfile_abcontr: Specify the output file for the interaction contrast\
-            results between A and B (case-sensitive).
-        outfile_abdiff: Specify the output file for the interaction difference\
-            results between A and B (case-sensitive).
+            results between A and B.
+        outfile_abdiff: Specify the output file for the interaction contrast\
+            results between A and B.
         outfile_abmean: Specify the output file for the mean results of the\
             interaction between A and B.
         outfile_bucket: Specify the output file for the bucket (combined)\
@@ -240,9 +360,9 @@ def v_3d_anova3_params(
     if outfile_ccontr is not None:
         params["outfile_ccontr"] = outfile_ccontr
     if outfile_abcontr is not None:
-        params["outfile_Abcontr"] = outfile_abcontr
+        params["outfile_abcontr"] = outfile_abcontr
     if outfile_abdiff is not None:
-        params["outfile_Abdiff"] = outfile_abdiff
+        params["outfile_abdiff"] = outfile_abdiff
     if outfile_abmean is not None:
         params["outfile_abmean"] = outfile_abmean
     if outfile_bucket is not None:
@@ -389,16 +509,10 @@ def v_3d_anova3_cargs(
             "-ccontr",
             params.get("outfile_ccontr")
         ])
-    if params.get("outfile_Abcontr") is not None:
-        cargs.extend([
-            "-Abcontr",
-            params.get("outfile_Abcontr")
-        ])
-    if params.get("outfile_Abdiff") is not None:
-        cargs.extend([
-            "-Abdiff",
-            params.get("outfile_Abdiff")
-        ])
+    if params.get("outfile_abcontr") is not None:
+        cargs.extend(dyn_cargs(params.get("outfile_abcontr")["__STYXTYPE__"])(params.get("outfile_abcontr"), execution))
+    if params.get("outfile_abdiff") is not None:
+        cargs.extend(dyn_cargs(params.get("outfile_abdiff")["__STYXTYPE__"])(params.get("outfile_abdiff"), execution))
     if params.get("outfile_abmean") is not None:
         cargs.extend([
             "-abmean",
@@ -496,8 +610,8 @@ def v_3d_anova3(
     outfile_acontr: str | None = None,
     outfile_bcontr: str | None = None,
     outfile_ccontr: str | None = None,
-    outfile_abcontr: str | None = None,
-    outfile_abdiff: str | None = None,
+    outfile_abcontr: V3dAnova3OutfileAbcontrParameters | None = None,
+    outfile_abdiff: V3dAnova3OutfileAbcontr1Parameters | None = None,
     outfile_abmean: str | None = None,
     outfile_bucket: str | None = None,
     anova_options: list[str] | None = None,
@@ -545,9 +659,9 @@ def v_3d_anova3(
         outfile_bcontr: Specify the output file for the B contrast results.
         outfile_ccontr: Specify the output file for the C contrast results.
         outfile_abcontr: Specify the output file for the interaction contrast\
-            results between A and B (case-sensitive).
-        outfile_abdiff: Specify the output file for the interaction difference\
-            results between A and B (case-sensitive).
+            results between A and B.
+        outfile_abdiff: Specify the output file for the interaction contrast\
+            results between A and B.
         outfile_abmean: Specify the output file for the mean results of the\
             interaction between A and B.
         outfile_bucket: Specify the output file for the bucket (combined)\
@@ -597,9 +711,13 @@ def v_3d_anova3(
 
 
 __all__ = [
+    "V3dAnova3OutfileAbcontr1Parameters",
+    "V3dAnova3OutfileAbcontrParameters",
     "V3dAnova3Outputs",
     "V3dAnova3Parameters",
     "V_3D_ANOVA3_METADATA",
     "v_3d_anova3",
+    "v_3d_anova3_outfile_abcontr_1_params",
+    "v_3d_anova3_outfile_abcontr_params",
     "v_3d_anova3_params",
 ]

niwrap_afni/afni/v_3d_attribute.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_ATTRIBUTE_METADATA = Metadata(
-    id="023f5df529fe405d80f04593e71e023c5a458d03.boutiques",
+    id="d1172ce42bca626c6612506d8a90643475b32da8.boutiques",
     name="3dAttribute",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",

niwrap_afni/afni/v_3d_auto_tcorrelate.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_AUTO_TCORRELATE_METADATA = Metadata(
-    id="54f323538871e62136cb28afd7fdc9c55ace001b.boutiques",
+    id="f8dd31b3bdbd84c61b724bec91c847beb95fd339.boutiques",
     name="3dAutoTcorrelate",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",

niwrap_afni/afni/v_3d_autobox.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_AUTOBOX_METADATA = Metadata(
-    id="614b8e391ea136b04b4fe49d62f798c0eada766e.boutiques",
+    id="c48b09409ec96591cf8ab9ce93ca409e6795208a.boutiques",
     name="3dAutobox",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",

niwrap_afni/afni/v_3d_automask.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_AUTOMASK_METADATA = Metadata(
-    id="82a07079691dfc6d4da9b82882274fb3db4cb678.boutiques",
+    id="856ea5835596fc570c8d957e8bf0bd92d56130cb.boutiques",
     name="3dAutomask",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",

niwrap_afni/afni/v_3d_ball_match.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_BALL_MATCH_METADATA = Metadata(
-    id="fe3fd0a09e1cb0531678dcf999710e6d7163d194.boutiques",
+    id="e91bd8bca8af6f73af7781b32ec76cb4701697b9.boutiques",
     name="3dBallMatch",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",

niwrap_afni/afni/v_3d_bandpass.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_BANDPASS_METADATA = Metadata(
-    id="cff0fd5c98147d66e1386a8d92bd67c38c9b9fa7.boutiques",
+    id="85554b333e3bdcbc05fde6959f1cb444905c3dd7.boutiques",
     name="3dBandpass",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",

niwrap_afni/afni/v_3d_blur_in_mask.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_BLUR_IN_MASK_METADATA = Metadata(
-    id="2020eccbab2609356d0e3ab2fdd84a54c25cb900.boutiques",
+    id="78220f12aa00c67903fa95e35580c1c0e4f335bd.boutiques",
     name="3dBlurInMask",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",

niwrap_afni/afni/v_3d_blur_to_fwhm.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_BLUR_TO_FWHM_METADATA = Metadata(
-    id="f4b40fc76ce4b806bbbbfa509356f57bb656233d.boutiques",
+    id="e3c0c223285ad52e0076e3b433c4e9372a9374b3.boutiques",
     name="3dBlurToFWHM",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",

niwrap_afni/afni/v_3d_brain_sync.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_BRAIN_SYNC_METADATA = Metadata(
-    id="5b4873a7460d63bb6ab8b2f718571646d6b0ba3b.boutiques",
+    id="508af7da56bddf5a954492ce4305cdd0edc2a285.boutiques",
     name="3dBrainSync",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",

niwrap_afni/afni/v_3d_brain_voyagerto_afni.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_BRAIN_VOYAGERTO_AFNI_METADATA = Metadata(
-    id="6e57612e994ff9fb4392a1ea7a2df2f7bddd8e62.boutiques",
+    id="5fa4482f1d05556b8c1f6948d6ca7a34ed478089.boutiques",
     name="3dBRAIN_VOYAGERtoAFNI",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",

niwrap_afni/afni/v_3d_brick_stat.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_BRICK_STAT_METADATA = Metadata(
-    id="2171879e0c09931b6800be575110e0354a0a8e86.boutiques",
+    id="a69dcfae94945e2d6a2a10deecf9753b5bb81503.boutiques",
     name="3dBrickStat",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",

niwrap_afni/afni/v_3d_clip_level.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_CLIP_LEVEL_METADATA = Metadata(
-    id="e0dffc3fb16b61bec3a898141cfff2cf90509ea6.boutiques",
+    id="88bdbec4ad5f8ad542e0aad8dde4036aca9e4e12.boutiques",
     name="3dClipLevel",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",

niwrap_afni/afni/v_3d_clust_count.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_CLUST_COUNT_METADATA = Metadata(
-    id="98fcc8c7fba23c3985c9517555b10b2b9741fa23.boutiques",
+    id="69d4eb9bd4a197a90cb255e74008d918a4d6fbec.boutiques",
     name="3dClustCount",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",

niwrap_afni/afni/v_3d_clust_sim.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_CLUST_SIM_METADATA = Metadata(
-    id="912b449ef9b8c9bbf2596a5e62a4511be33fefad.boutiques",
+    id="3538a0525d6d878ecea30110b69b1f8b3e739d8a.boutiques",
     name="3dClustSim",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",

niwrap_afni/afni/v_3d_clusterize.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_CLUSTERIZE_METADATA = Metadata(
-    id="246ae39c1ef3384b86a60550a94fbf5baade053a.boutiques",
+    id="e4655542f19e9af1312825c39fb9645b11431092.boutiques",
     name="3dClusterize",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",

niwrap_afni/afni/v_3d_cm.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_CM_METADATA = Metadata(
-    id="63ca74289af452584f6dd9b272bc4b15b6ffb8b0.boutiques",
+    id="86d28ac666c67b4bd4d8d68c8533d068db093ca1.boutiques",
     name="3dCM",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",

niwrap_afni/afni/v_3d_compare_affine.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_COMPARE_AFFINE_METADATA = Metadata(
-    id="05a5d8e8f58b82dd3d94b8878f12307d386f682c.boutiques",
+    id="d33e1943950db976fb3b7c9bb263a88cae31d503.boutiques",
     name="3dCompareAffine",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",

niwrap_afni/afni/v_3d_conformist.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_CONFORMIST_METADATA = Metadata(
-    id="f609f1b815cd20fa63c94e47456124184827cae8.boutiques",
+    id="63b3754b3ba2db8a7c79b06afeb0810bdb32d0bc.boutiques",
     name="3dConformist",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",

niwrap_afni/afni/v_3d_convolve.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_CONVOLVE_METADATA = Metadata(
-    id="98f37303338db7321cbe065f60581ee844d011e4.boutiques",
+    id="a0c61b357c0b8968a59079d164442d2ca0b8cb8d.boutiques",
     name="3dConvolve",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",

niwrap_afni/afni/v_3d_cruiseto_afni.py

@@ -6,21 +6,27 @@ import pathlib
 from styxdefs import *
 
 V_3D_CRUISETO_AFNI_METADATA = Metadata(
-    id="4b72eb1971f7fa8dc1755dacfa39929795432071.boutiques",
+    id="ecced7561c452fa6014dcc10bbbbd514bae7282a.boutiques",
     name="3dCRUISEtoAFNI",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
 )
 
 
+V3dCruisetoAfniTraceParameters = typing.TypedDict('V3dCruisetoAfniTraceParameters', {
+    "__STYX_TYPE__": typing.Literal["trace"],
+    "trace": bool,
+    "TRACE": bool,
+})
+
+
 V3dCruisetoAfniParameters = typing.TypedDict('V3dCruisetoAfniParameters', {
     "__STYX_TYPE__": typing.Literal["3dCRUISEtoAFNI"],
     "input": InputPathType,
     "novolreg": bool,
     "noxform": bool,
     "setenv": typing.NotRequired[str | None],
-    "TRACE": bool,
-    "TRACE_1": bool,
+    "trace": typing.NotRequired[V3dCruisetoAfniTraceParameters | None],
     "nomall": bool,
     "yesmall": bool,
     "help": bool,
@@ -41,6 +47,7 @@ def dyn_cargs(
     """
     return {
         "3dCRUISEtoAFNI": v_3d_cruiseto_afni_cargs,
+        "trace": v_3d_cruiseto_afni_trace_cargs,
     }.get(t)
 
 
@@ -59,6 +66,49 @@ def dyn_outputs(
     }.get(t)
 
 
+def v_3d_cruiseto_afni_trace_params(
+    trace_: bool = False,
+    trace_2: bool = False,
+) -> V3dCruisetoAfniTraceParameters:
+    """
+    Build parameters.
+    
+    Args:
+        trace_: Turns on In/Out debug and Memory tracing. It's recommended to\
+            redirect stdout to a file when using this option.
+        trace_2: Turns on extreme tracing.
+    Returns:
+        Parameter dictionary
+    """
+    params = {
+        "__STYXTYPE__": "trace",
+        "trace": trace_,
+        "TRACE": trace_2,
+    }
+    return params
+
+
+def v_3d_cruiseto_afni_trace_cargs(
+    params: V3dCruisetoAfniTraceParameters,
+    execution: Execution,
+) -> list[str]:
+    """
+    Build command-line arguments from parameters.
+    
+    Args:
+        params: The parameters.
+        execution: The execution object for resolving input paths.
+    Returns:
+        Command-line arguments.
+    """
+    cargs = []
+    if params.get("trace"):
+        cargs.append("-trace")
+    if params.get("TRACE"):
+        cargs.append("-TRACE")
+    return cargs
+
+
 class V3dCruisetoAfniOutputs(typing.NamedTuple):
     """
     Output object returned when calling `v_3d_cruiseto_afni(...)`.
@@ -72,8 +122,7 @@ def v_3d_cruiseto_afni_params(
     novolreg: bool = False,
     noxform: bool = False,
     setenv: str | None = None,
-    trace_: bool = False,
-    trace_1: bool = False,
+    trace_: V3dCruisetoAfniTraceParameters | None = None,
     nomall: bool = False,
     yesmall: bool = False,
     help_: bool = False,
@@ -89,8 +138,8 @@ def v_3d_cruiseto_afni_params(
         noxform: Same as -novolreg.
         setenv: Set environment variable ENVname to be ENVvalue. Quotes are\
             necessary. Example: suma -setenv "'SUMA_BackgroundColor = 1 0 1'".
-        trace_: Turns on extreme tracing.
-        trace_1: Turns on extreme tracing.
+        trace_: Turns on In/Out debug and Memory tracing. It's recommended to\
+            redirect stdout to a file when using this option.
         nomall: Turn off memory tracing.
         yesmall: Turn on memory tracing (default).
         help_: The entire help output.
@@ -103,8 +152,6 @@ def v_3d_cruiseto_afni_params(
         "input": input_,
         "novolreg": novolreg,
         "noxform": noxform,
-        "TRACE": trace_,
-        "TRACE_1": trace_1,
         "nomall": nomall,
         "yesmall": yesmall,
         "help": help_,
@@ -112,6 +159,8 @@ def v_3d_cruiseto_afni_params(
     }
     if setenv is not None:
         params["setenv"] = setenv
+    if trace_ is not None:
+        params["trace"] = trace_
     return params
 
 
@@ -143,10 +192,8 @@ def v_3d_cruiseto_afni_cargs(
             "-setenv",
             params.get("setenv")
         ])
-    if params.get("TRACE"):
-        cargs.append("-TRACE")
-    if params.get("TRACE_1"):
-        cargs.append("-TRACE")
+    if params.get("trace") is not None:
+        cargs.extend(dyn_cargs(params.get("trace")["__STYXTYPE__"])(params.get("trace"), execution))
     if params.get("nomall"):
         cargs.append("-nomall")
     if params.get("yesmall"):
@@ -206,8 +253,7 @@ def v_3d_cruiseto_afni(
     novolreg: bool = False,
     noxform: bool = False,
     setenv: str | None = None,
-    trace_: bool = False,
-    trace_1: bool = False,
+    trace_: V3dCruisetoAfniTraceParameters | None = None,
     nomall: bool = False,
     yesmall: bool = False,
     help_: bool = False,
@@ -228,8 +274,8 @@ def v_3d_cruiseto_afni(
         noxform: Same as -novolreg.
         setenv: Set environment variable ENVname to be ENVvalue. Quotes are\
             necessary. Example: suma -setenv "'SUMA_BackgroundColor = 1 0 1'".
-        trace_: Turns on extreme tracing.
-        trace_1: Turns on extreme tracing.
+        trace_: Turns on In/Out debug and Memory tracing. It's recommended to\
+            redirect stdout to a file when using this option.
         nomall: Turn off memory tracing.
         yesmall: Turn on memory tracing (default).
         help_: The entire help output.
@@ -246,7 +292,6 @@ def v_3d_cruiseto_afni(
         noxform=noxform,
         setenv=setenv,
         trace_=trace_,
-        trace_1=trace_1,
         nomall=nomall,
         yesmall=yesmall,
         help_=help_,
@@ -258,7 +303,9 @@ def v_3d_cruiseto_afni(
 __all__ = [
     "V3dCruisetoAfniOutputs",
     "V3dCruisetoAfniParameters",
+    "V3dCruisetoAfniTraceParameters",
     "V_3D_CRUISETO_AFNI_METADATA",
     "v_3d_cruiseto_afni",
     "v_3d_cruiseto_afni_params",
+    "v_3d_cruiseto_afni_trace_params",
 ]

niwrap_afni/afni/v_3d_deconvolve.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_DECONVOLVE_METADATA = Metadata(
-    id="3c5bd8bab8c9c3f4b4586c2e6fc553ef1b03f1e4.boutiques",
+    id="225d407793b7fcf83484f3e230794ff1d08c27df.boutiques",
     name="3dDeconvolve",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",

niwrap_afni/afni/v_3d_degree_centrality.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_DEGREE_CENTRALITY_METADATA = Metadata(
-    id="b52b7e118f9973ad723c05506b8d75f114f296f2.boutiques",
+    id="6b26eb322a598bdf48e84565bbf6674c9e7c8cf4.boutiques",
     name="3dDegreeCentrality",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",

niwrap_afni/afni/v_3d_depth_map.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_DEPTH_MAP_METADATA = Metadata(
-    id="4a6704d8156d9e0a414515196af7b7f69ca298eb.boutiques",
+    id="b4b586aabaa0388928e52c39e0a960a38ea18d5b.boutiques",
     name="3dDepthMap",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",