niwrap-afni 0.5.1__py3-none-any.whl → 0.5.3__py3-none-any.whl

niwrap_afni/afni/v_3d_gen_feature_dist.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_GEN_FEATURE_DIST_METADATA = Metadata(
-    id="306602359a0090c4e74a2cc38f89a25555f89cc6.boutiques",
+    id="4e2a6d02fd6017cbe5c9c54a1a9c65bd9ea7921c.boutiques",
     name="3dGenFeatureDist",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -22,6 +22,10 @@ V3dGenFeatureDistParameters = typing.TypedDict('V3dGenFeatureDistParameters', {
     "debug_level": typing.NotRequired[float | None],
     "other": bool,
     "no_other": bool,
+    "samp": typing.NotRequired[list[str] | None],
+    "sig": typing.NotRequired[list[str] | None],
+    "hspec": typing.NotRequired[list[str] | None],
+    "labeltable": typing.NotRequired[InputPathType | None],
     "show_histograms": typing.NotRequired[str | None],
 })
 
@@ -76,6 +80,10 @@ def v_3d_gen_feature_dist_params(
     debug_level: float | None = None,
     other: bool = False,
     no_other: bool = False,
+    samp: list[str] | None = None,
+    sig: list[str] | None = None,
+    hspec: list[str] | None = None,
+    labeltable: InputPathType | None = None,
     show_histograms: str | None = None,
 ) -> V3dGenFeatureDistParameters:
     """
@@ -92,6 +100,10 @@ def v_3d_gen_feature_dist_params(
         debug_level: Debugging level.
         other: Add histograms for an 'OTHER' class that has a uniform pdf.
         no_other: Opposite of -OTHER.
+        samp: Specify which voxels belong to each class of interest.
+        sig: Specify volumes that define the features.
+        hspec: Set histogram parameters for a specific feature.
+        labeltable: Specify the label table.
         show_histograms: Show specified histograms and quit.
     Returns:
         Parameter dictionary
@@ -108,6 +120,14 @@ def v_3d_gen_feature_dist_params(
         params["prefix"] = prefix
     if debug_level is not None:
         params["debug_level"] = debug_level
+    if samp is not None:
+        params["samp"] = samp
+    if sig is not None:
+        params["sig"] = sig
+    if hspec is not None:
+        params["hspec"] = hspec
+    if labeltable is not None:
+        params["labeltable"] = labeltable
     if show_histograms is not None:
         params["show_histograms"] = show_histograms
     return params
@@ -152,6 +172,26 @@ def v_3d_gen_feature_dist_cargs(
         cargs.append("-OTHER")
     if params.get("no_other"):
         cargs.append("-no_OTHER")
+    if params.get("samp") is not None:
+        cargs.extend([
+            "-samp",
+            *params.get("samp")
+        ])
+    if params.get("sig") is not None:
+        cargs.extend([
+            "-sig",
+            *params.get("sig")
+        ])
+    if params.get("hspec") is not None:
+        cargs.extend([
+            "-hspec",
+            *params.get("hspec")
+        ])
+    if params.get("labeltable") is not None:
+        cargs.extend([
+            "-labeltable",
+            execution.input_file(params.get("labeltable"))
+        ])
     if params.get("show_histograms") is not None:
         cargs.extend([
             "-ShowTheseHists",
@@ -212,6 +252,10 @@ def v_3d_gen_feature_dist(
     debug_level: float | None = None,
     other: bool = False,
     no_other: bool = False,
+    samp: list[str] | None = None,
+    sig: list[str] | None = None,
+    hspec: list[str] | None = None,
+    labeltable: InputPathType | None = None,
     show_histograms: str | None = None,
     runner: Runner | None = None,
 ) -> V3dGenFeatureDistOutputs:
@@ -233,6 +277,10 @@ def v_3d_gen_feature_dist(
         debug_level: Debugging level.
         other: Add histograms for an 'OTHER' class that has a uniform pdf.
         no_other: Opposite of -OTHER.
+        samp: Specify which voxels belong to each class of interest.
+        sig: Specify volumes that define the features.
+        hspec: Set histogram parameters for a specific feature.
+        labeltable: Specify the label table.
         show_histograms: Show specified histograms and quit.
         runner: Command runner.
     Returns:
@@ -248,6 +296,10 @@ def v_3d_gen_feature_dist(
         debug_level=debug_level,
         other=other,
         no_other=no_other,
+        samp=samp,
+        sig=sig,
+        hspec=hspec,
+        labeltable=labeltable,
         show_histograms=show_histograms,
     )
     return v_3d_gen_feature_dist_execute(params, execution)

niwrap_afni/afni/v_3d_hist.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_HIST_METADATA = Metadata(
-    id="5dff8f7ac913ce4a3781c6d59d7827316323eded.boutiques",
+    id="848d311049e93b6281b7a88875dd047ad4a77407.boutiques",
     name="3dHist",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -16,6 +16,7 @@ V_3D_HIST_METADATA = Metadata(
 V3dHistParameters = typing.TypedDict('V3dHistParameters', {
     "__STYX_TYPE__": typing.Literal["3dHist"],
     "input": InputPathType,
+    "dind_subbrick": typing.NotRequired[float | None],
     "mask_dset": typing.NotRequired[InputPathType | None],
     "mask_range": typing.NotRequired[list[float] | None],
     "cmask": typing.NotRequired[str | None],
@@ -78,6 +79,7 @@ class V3dHistOutputs(typing.NamedTuple):
 
 def v_3d_hist_params(
     input_: InputPathType,
+    dind_subbrick: float | None = None,
     mask_dset: InputPathType | None = None,
     mask_range: list[float] | None = None,
     cmask: str | None = None,
@@ -102,6 +104,7 @@ def v_3d_hist_params(
     
     Args:
         input_: Dataset providing values for histogram.
+        dind_subbrick: Use sub-brick SB from the input rather than 0.
         mask_dset: Provide mask dataset to select subset of input.
         mask_range: Specify the range of values to consider from MSET. Default\
             is anything non-zero.
@@ -136,6 +139,8 @@ def v_3d_hist_params(
         "showhist": showhist,
         "quiet": quiet,
     }
+    if dind_subbrick is not None:
+        params["dind_subbrick"] = dind_subbrick
     if mask_dset is not None:
         params["mask_dset"] = mask_dset
     if mask_range is not None:
@@ -185,6 +190,11 @@ def v_3d_hist_cargs(
     cargs = []
     cargs.append("3dHist")
     cargs.append(execution.input_file(params.get("input")))
+    if params.get("dind_subbrick") is not None:
+        cargs.extend([
+            "-dind",
+            str(params.get("dind_subbrick"))
+        ])
     if params.get("mask_dset") is not None:
         cargs.extend([
             "-mask",
@@ -314,6 +324,7 @@ def v_3d_hist_execute(
 
 def v_3d_hist(
     input_: InputPathType,
+    dind_subbrick: float | None = None,
     mask_dset: InputPathType | None = None,
     mask_range: list[float] | None = None,
     cmask: str | None = None,
@@ -343,6 +354,7 @@ def v_3d_hist(
     
     Args:
         input_: Dataset providing values for histogram.
+        dind_subbrick: Use sub-brick SB from the input rather than 0.
         mask_dset: Provide mask dataset to select subset of input.
         mask_range: Specify the range of values to consider from MSET. Default\
             is anything non-zero.
@@ -375,6 +387,7 @@ def v_3d_hist(
     execution = runner.start_execution(V_3D_HIST_METADATA)
     params = v_3d_hist_params(
         input_=input_,
+        dind_subbrick=dind_subbrick,
         mask_dset=mask_dset,
         mask_range=mask_range,
         cmask=cmask,

niwrap_afni/afni/v_3d_icc.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_ICC_METADATA = Metadata(
-    id="6b7ec5c6de013c42d47420ebf12a564c200ff8a3.boutiques",
+    id="1652fdd3c8a77717220b28f06430ccf258c293f3.boutiques",
     name="3dICC",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -19,6 +19,16 @@ V3dIccParameters = typing.TypedDict('V3dIccParameters', {
     "prefix": str,
     "mask": typing.NotRequired[InputPathType | None],
     "data_table": str,
+    "bounds": typing.NotRequired[list[float] | None],
+    "jobs": typing.NotRequired[float | None],
+    "qVars": typing.NotRequired[str | None],
+    "qVarCenters": typing.NotRequired[str | None],
+    "subj": typing.NotRequired[str | None],
+    "input_file_column": typing.NotRequired[str | None],
+    "tStat": typing.NotRequired[str | None],
+    "dbgArgs": bool,
+    "cio": bool,
+    "rio": bool,
 })
 
 
@@ -69,6 +79,16 @@ def v_3d_icc_params(
     prefix: str,
     data_table: str,
     mask: InputPathType | None = None,
+    bounds: list[float] | None = None,
+    jobs: float | None = None,
+    q_vars: str | None = None,
+    q_var_centers: str | None = None,
+    subj: str | None = None,
+    input_file_column: str | None = None,
+    t_stat: str | None = None,
+    dbg_args: bool = False,
+    cio: bool = False,
+    rio: bool = False,
 ) -> V3dIccParameters:
     """
     Build parameters.
@@ -86,6 +106,25 @@ def v_3d_icc_params(
             The first column is reserved with label 'Subj', and the last is\
             reserved for 'InputFile'.
         mask: Path to mask file. Only process voxels inside this mask.
+        bounds: Bounds for outlier removal. Provide two numbers: the lower\
+            bound (lb) and the upper bound (ub). Input data will be confined within\
+            [lb, ub]. Any values beyond the bounds will be treated as missing.
+        jobs: Number of jobs for parallel computing. Choose 1 for a\
+            single-processor computer.
+        q_vars: Identify quantitative variables with this option. List should\
+            be separated with comma and surrounded within quotes.
+        q_var_centers: Specify centering values for quantitative variables\
+            identified under -qVars. Multiple centers are separated by commas and\
+            should be surrounded within quotes.
+        subj: Specify the column name that is designated as the measuring\
+            entity variable (usually subject).
+        input_file_column: Specify the last column name that is designated for\
+            input files of effect estimate.
+        t_stat: Specify the column name that is designated as the t-statistic.
+        dbg_args: Enable R to save the parameters in a file called\
+            .3dICC.dbg.AFNI.args in the current directory for debugging.
+        cio: Use AFNI's C io functions. Default is -cio.
+        rio: Use R's io functions.
     Returns:
         Parameter dictionary
     """
@@ -94,9 +133,26 @@ def v_3d_icc_params(
         "model": model,
         "prefix": prefix,
         "data_table": data_table,
+        "dbgArgs": dbg_args,
+        "cio": cio,
+        "rio": rio,
     }
     if mask is not None:
         params["mask"] = mask
+    if bounds is not None:
+        params["bounds"] = bounds
+    if jobs is not None:
+        params["jobs"] = jobs
+    if q_vars is not None:
+        params["qVars"] = q_vars
+    if q_var_centers is not None:
+        params["qVarCenters"] = q_var_centers
+    if subj is not None:
+        params["subj"] = subj
+    if input_file_column is not None:
+        params["input_file_column"] = input_file_column
+    if t_stat is not None:
+        params["tStat"] = t_stat
     return params
 
 
@@ -129,7 +185,47 @@ def v_3d_icc_cargs(
         "-dataTable",
         params.get("data_table")
     ])
-    cargs.append("[OPTIONS]")
+    if params.get("bounds") is not None:
+        cargs.extend([
+            "-bounds",
+            *map(str, params.get("bounds"))
+        ])
+    if params.get("jobs") is not None:
+        cargs.extend([
+            "-jobs",
+            str(params.get("jobs"))
+        ])
+    if params.get("qVars") is not None:
+        cargs.extend([
+            "-qVars",
+            params.get("qVars")
+        ])
+    if params.get("qVarCenters") is not None:
+        cargs.extend([
+            "-qVarCenters",
+            params.get("qVarCenters")
+        ])
+    if params.get("subj") is not None:
+        cargs.extend([
+            "-Subj",
+            params.get("subj")
+        ])
+    if params.get("input_file_column") is not None:
+        cargs.extend([
+            "-IF",
+            params.get("input_file_column")
+        ])
+    if params.get("tStat") is not None:
+        cargs.extend([
+            "-tStat",
+            params.get("tStat")
+        ])
+    if params.get("dbgArgs"):
+        cargs.append("-dbgArgs")
+    if params.get("cio"):
+        cargs.append("-cio")
+    if params.get("rio"):
+        cargs.append("-Rio")
     return cargs
 
 
@@ -182,6 +278,16 @@ def v_3d_icc(
     prefix: str,
     data_table: str,
     mask: InputPathType | None = None,
+    bounds: list[float] | None = None,
+    jobs: float | None = None,
+    q_vars: str | None = None,
+    q_var_centers: str | None = None,
+    subj: str | None = None,
+    input_file_column: str | None = None,
+    t_stat: str | None = None,
+    dbg_args: bool = False,
+    cio: bool = False,
+    rio: bool = False,
     runner: Runner | None = None,
 ) -> V3dIccOutputs:
     """
@@ -204,6 +310,25 @@ def v_3d_icc(
             The first column is reserved with label 'Subj', and the last is\
             reserved for 'InputFile'.
         mask: Path to mask file. Only process voxels inside this mask.
+        bounds: Bounds for outlier removal. Provide two numbers: the lower\
+            bound (lb) and the upper bound (ub). Input data will be confined within\
+            [lb, ub]. Any values beyond the bounds will be treated as missing.
+        jobs: Number of jobs for parallel computing. Choose 1 for a\
+            single-processor computer.
+        q_vars: Identify quantitative variables with this option. List should\
+            be separated with comma and surrounded within quotes.
+        q_var_centers: Specify centering values for quantitative variables\
+            identified under -qVars. Multiple centers are separated by commas and\
+            should be surrounded within quotes.
+        subj: Specify the column name that is designated as the measuring\
+            entity variable (usually subject).
+        input_file_column: Specify the last column name that is designated for\
+            input files of effect estimate.
+        t_stat: Specify the column name that is designated as the t-statistic.
+        dbg_args: Enable R to save the parameters in a file called\
+            .3dICC.dbg.AFNI.args in the current directory for debugging.
+        cio: Use AFNI's C io functions. Default is -cio.
+        rio: Use R's io functions.
         runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `V3dIccOutputs`).
@@ -215,6 +340,16 @@ def v_3d_icc(
         prefix=prefix,
         mask=mask,
         data_table=data_table,
+        bounds=bounds,
+        jobs=jobs,
+        q_vars=q_vars,
+        q_var_centers=q_var_centers,
+        subj=subj,
+        input_file_column=input_file_column,
+        t_stat=t_stat,
+        dbg_args=dbg_args,
+        cio=cio,
+        rio=rio,
     )
     return v_3d_icc_execute(params, execution)
 

niwrap_afni/afni/v_3d_lfcd.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_LFCD_METADATA = Metadata(
-    id="bf72e901409ebf787635076f27fc633055ebec14.boutiques",
+    id="7698c7de46741d205ab4763adc29dccd492e943b.boutiques",
     name="3dLFCD",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -19,6 +19,8 @@ V3dLfcdParameters = typing.TypedDict('V3dLfcdParameters', {
     "autoclip": bool,
     "automask": bool,
     "mask": typing.NotRequired[InputPathType | None],
+    "num_threads": typing.NotRequired[int | None],
+    "out_file": typing.NotRequired[str | None],
     "outputtype": typing.NotRequired[typing.Literal["NIFTI", "AFNI", "NIFTI_GZ"] | None],
     "polort": typing.NotRequired[int | None],
     "thresh": typing.NotRequired[float | None],
@@ -65,8 +67,6 @@ class V3dLfcdOutputs(typing.NamedTuple):
     """Output root folder. This is the root folder for all outputs."""
     out_file: OutputPathType
     """Output image file name."""
-    out_file_: OutputPathType
-    """Output file."""
 
 
 def v_3d_lfcd_params(
@@ -74,6 +74,8 @@ def v_3d_lfcd_params(
     autoclip: bool = False,
     automask: bool = False,
     mask: InputPathType | None = None,
+    num_threads: int | None = None,
+    out_file: str | None = None,
     outputtype: typing.Literal["NIFTI", "AFNI", "NIFTI_GZ"] | None = None,
     polort: int | None = None,
     thresh: float | None = None,
@@ -86,6 +88,8 @@ def v_3d_lfcd_params(
         autoclip: Clip off low-intensity regions in the dataset.
         automask: Mask the dataset to target brain-only voxels.
         mask: Mask file to mask input data.
+        num_threads: Set number of threads.
+        out_file: Output image file name.
         outputtype: 'nifti' or 'afni' or 'nifti_gz'. Afni output filetype.
         polort: No description provided.
         thresh: Threshold to exclude connections where corr <= thresh.
@@ -100,6 +104,10 @@ def v_3d_lfcd_params(
     }
     if mask is not None:
         params["mask"] = mask
+    if num_threads is not None:
+        params["num_threads"] = num_threads
+    if out_file is not None:
+        params["out_file"] = out_file
     if outputtype is not None:
         params["outputtype"] = outputtype
     if polort is not None:
@@ -134,7 +142,13 @@ def v_3d_lfcd_cargs(
             "-mask",
             execution.input_file(params.get("mask"))
         ])
-    cargs.append("[OUT_FILE]")
+    if params.get("num_threads") is not None:
+        cargs.append(str(params.get("num_threads")))
+    if params.get("out_file") is not None:
+        cargs.extend([
+            "-prefix",
+            params.get("out_file")
+        ])
     if params.get("outputtype") is not None:
         cargs.append(params.get("outputtype"))
     if params.get("polort") is not None:
@@ -166,7 +180,6 @@ def v_3d_lfcd_outputs(
     ret = V3dLfcdOutputs(
         root=execution.output_file("."),
         out_file=execution.output_file(pathlib.Path(params.get("in_file")).name + "_afni"),
-        out_file_=execution.output_file("out_file"),
     )
     return ret
 
@@ -201,6 +214,8 @@ def v_3d_lfcd(
     autoclip: bool = False,
     automask: bool = False,
     mask: InputPathType | None = None,
+    num_threads: int | None = None,
+    out_file: str | None = None,
     outputtype: typing.Literal["NIFTI", "AFNI", "NIFTI_GZ"] | None = None,
     polort: int | None = None,
     thresh: float | None = None,
@@ -219,6 +234,8 @@ def v_3d_lfcd(
         autoclip: Clip off low-intensity regions in the dataset.
         automask: Mask the dataset to target brain-only voxels.
         mask: Mask file to mask input data.
+        num_threads: Set number of threads.
+        out_file: Output image file name.
         outputtype: 'nifti' or 'afni' or 'nifti_gz'. Afni output filetype.
         polort: No description provided.
         thresh: Threshold to exclude connections where corr <= thresh.
@@ -233,6 +250,8 @@ def v_3d_lfcd(
         autoclip=autoclip,
         automask=automask,
         mask=mask,
+        num_threads=num_threads,
+        out_file=out_file,
         outputtype=outputtype,
         polort=polort,
         thresh=thresh,

niwrap_afni/afni/v_3d_lme.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_LME_METADATA = Metadata(
-    id="e9a80d6729c55d33424066db0a326673e6b70516.boutiques",
+    id="793d77145ed7716db55eb8665482b6bfad2c1e45.boutiques",
     name="3dLME",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -295,7 +295,6 @@ def v_3d_lme_cargs(
         cargs.append("-logLik")
     if params.get("LOGIT_FLAG"):
         cargs.append("-LOGIT")
-    cargs.append("-ml")
     if params.get("ML_FLAG"):
         cargs.append("-ML")
     if params.get("QVARS_CENTERS") is not None:
@@ -343,7 +342,6 @@ def v_3d_lme_cargs(
             "-REprefix",
             params.get("REPREFIX")
         ])
-    cargs.append("-RIO")
     if params.get("RIO_FLAG"):
         cargs.append("-Rio")
     if params.get("SHOW_OPTIONS_FLAG"):

niwrap_afni/afni/v_3d_local_histog.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_3D_LOCAL_HISTOG_METADATA = Metadata(
-    id="de01f1dbbd5bfe5031e2c7c493ec364d82e32012.boutiques",
+    id="b6fca81642196b74e87aaa904d948945eae79fdd.boutiques",
     name="3dLocalHistog",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -20,7 +20,10 @@ V3dLocalHistogParameters = typing.TypedDict('V3dLocalHistogParameters', {
     "hsave": typing.NotRequired[str | None],
     "lab_file": typing.NotRequired[InputPathType | None],
     "exclude": typing.NotRequired[list[str] | None],
+    "exc_nonlab": bool,
     "mincount": typing.NotRequired[float | None],
+    "probability": bool,
+    "quiet": bool,
     "input_datasets": list[InputPathType],
 })
 
@@ -78,7 +81,10 @@ def v_3d_local_histog_params(
     hsave: str | None = None,
     lab_file: InputPathType | None = None,
     exclude: list[str] | None = None,
+    exc_nonlab: bool = False,
     mincount: float | None = None,
+    probability: bool = False,
+    quiet: bool = False,
 ) -> V3dLocalHistogParameters:
     """
     Build parameters.
@@ -94,14 +100,22 @@ def v_3d_local_histog_params(
         lab_file: Use file 'LL' as a label file.
         exclude: Exclude values from 'a' to 'b' from the counting. This option\
             can be used more than once.
+        exc_nonlab: If '-lab_file' is used, then exclude all values that are\
+            NOT in the label file (except for 0).
         mincount: Exclude values which appear in the overall histogram fewer\
             than 'mm' times.
+        probability: Convert each count to a probability by dividing by the\
+            total number of counts at each voxel.
+        quiet: Stop the highly informative progress reports.
     Returns:
         Parameter dictionary
     """
     params = {
         "__STYXTYPE__": "3dLocalHistog",
         "prefix": prefix,
+        "exc_nonlab": exc_nonlab,
+        "probability": probability,
+        "quiet": quiet,
         "input_datasets": input_datasets,
     }
     if nbhd_option is not None:
@@ -156,11 +170,17 @@ def v_3d_local_histog_cargs(
             "-exclude",
             *params.get("exclude")
         ])
+    if params.get("exc_nonlab"):
+        cargs.append("-excNONLAB")
     if params.get("mincount") is not None:
         cargs.extend([
             "-mincount",
             str(params.get("mincount"))
         ])
+    if params.get("probability"):
+        cargs.append("-prob")
+    if params.get("quiet"):
+        cargs.append("-quiet")
     cargs.extend([execution.input_file(f) for f in params.get("input_datasets")])
     return cargs
 
@@ -218,7 +238,10 @@ def v_3d_local_histog(
     hsave: str | None = None,
     lab_file: InputPathType | None = None,
     exclude: list[str] | None = None,
+    exc_nonlab: bool = False,
     mincount: float | None = None,
+    probability: bool = False,
+    quiet: bool = False,
     runner: Runner | None = None,
 ) -> V3dLocalHistogOutputs:
     """
@@ -239,8 +262,13 @@ def v_3d_local_histog(
         lab_file: Use file 'LL' as a label file.
         exclude: Exclude values from 'a' to 'b' from the counting. This option\
             can be used more than once.
+        exc_nonlab: If '-lab_file' is used, then exclude all values that are\
+            NOT in the label file (except for 0).
         mincount: Exclude values which appear in the overall histogram fewer\
             than 'mm' times.
+        probability: Convert each count to a probability by dividing by the\
+            total number of counts at each voxel.
+        quiet: Stop the highly informative progress reports.
         runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `V3dLocalHistogOutputs`).
@@ -253,7 +281,10 @@ def v_3d_local_histog(
         hsave=hsave,
         lab_file=lab_file,
         exclude=exclude,
+        exc_nonlab=exc_nonlab,
         mincount=mincount,
+        probability=probability,
+        quiet=quiet,
         input_datasets=input_datasets,
     )
     return v_3d_local_histog_execute(params, execution)