nimare 0.5.1rc2__py3-none-any.whl → 0.5.3__py3-none-any.whl

nimare/_version.py

@@ -8,11 +8,11 @@ import json
 
 version_json = '''
 {
- "date": "2025-06-13T14:42:16-0500",
+ "date": "2025-07-26T17:24:25-0500",
  "dirty": false,
  "error": null,
- "full-revisionid": "f393f27b4e273646f4fdf425dfdba8d865099917",
- "version": "0.5.1rc2"
+ "full-revisionid": "096951f4879c2b5f508463c2efc4a3da9ebaf9bc",
+ "version": "0.5.3"
 }
 '''  # END VERSION_JSON
 

nimare/reports/base.py

@@ -79,6 +79,7 @@ PARAMETERS_DICT = {
     "varcope": "Variance of the parameter estimate",
     "t": "T-statistic",
     "z": "Z-statistic",
+    "vfwe_only": "Voxel-level FWE only",
 }
 
 PNG_SNIPPET = """\
@@ -172,7 +173,7 @@ def _get_ibma_summary(dset, sel_ids):
     ]
 
     maptype_text = ["<li>Available maps: ", "<ul>"]
-    maptype_text.extend(f"<li>{PARAMETERS_DICT[m]} ({m})</li>" for m in map_type)
+    maptype_text.extend(f"<li>{PARAMETERS_DICT.get(m, m)} ({m})</li>" for m in map_type)
     maptype_text.extend(["</ul>", "</li>"])
 
     ibma_text.extend(maptype_text)
@@ -201,7 +202,9 @@ def _get_kernel_summary(params_dict):
     kernel_transformer = str(params_dict["kernel_transformer"])
     ker_params = {k: v for k, v in params_dict.items() if k.startswith("kernel_transformer__")}
     ker_params_text = ["<ul>"]
-    ker_params_text.extend(f"<li>{PARAMETERS_DICT[k]}: {v}</li>" for k, v in ker_params.items())
+    ker_params_text.extend(
+        f"<li>{PARAMETERS_DICT.get(k, k)}: {v}</li>" for k, v in ker_params.items()
+    )
     ker_params_text.append("</ul>")
     ker_params_text = "".join(ker_params_text)
 
@@ -216,7 +219,7 @@ def _gen_est_summary(obj, out_filename):
     ker_text = _get_kernel_summary(params_dict) if isinstance(obj, CBMAEstimator) else ""
 
     est_params = {k: v for k, v in params_dict.items() if not k.startswith("kernel_transformer")}
-    est_params_text = [f"<li>{PARAMETERS_DICT[k]}: {v}</li>" for k, v in est_params.items()]
+    est_params_text = [f"<li>{PARAMETERS_DICT.get(k, k)}: {v}</li>" for k, v in est_params.items()]
     est_params_text = "".join(est_params_text)
 
     est_name = obj.__class__.__name__
@@ -233,12 +236,14 @@ def _gen_cor_summary(obj, out_filename):
     """Generate html with parameter use in obj (e.g., corrector)."""
     params_dict = obj.get_params()
 
-    cor_params_text = [f"<li>{PARAMETERS_DICT[k]}: {v}</li>" for k, v in params_dict.items()]
+    cor_params_text = [
+        f"<li>{PARAMETERS_DICT.get(k, k)}: {v}</li>" for k, v in params_dict.items()
+    ]
     cor_params_text = "".join(cor_params_text)
 
     ext_params_text = ["<ul>"]
     ext_params_text.extend(
-        f"<li>{PARAMETERS_DICT[k]}: {v}</li>" for k, v in obj.parameters.items()
+        f"<li>{PARAMETERS_DICT.get(k, k)}: {v}</li>" for k, v in obj.parameters.items()
     )
     ext_params_text.append("</ul>")
     ext_params_text = "".join(ext_params_text)

nimare/utils.py

@@ -207,7 +207,8 @@ def mm2vox(xyz, affine):
     From here:
     http://blog.chrisgorgolewski.org/2014/12/how-to-convert-between-voxel-and-mm.html
     """
-    ijk = nib.affines.apply_affine(np.linalg.inv(affine), xyz).astype(int)
+    with np.errstate(invalid="ignore"):
+        ijk = nib.affines.apply_affine(np.linalg.inv(affine), xyz).astype(int)
     return ijk
 
 

{nimare-0.5.1rc2.dist-info → nimare-0.5.3.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: nimare
-Version: 0.5.1rc2
+Version: 0.5.3
 Summary: NiMARE: Neuroimaging Meta-Analysis Research Environment
 Home-page: https://github.com/neurostuff/NiMARE
 Author: NiMARE developers
@@ -28,7 +28,7 @@ Requires-Dist: jinja2
 Requires-Dist: joblib>=1.3.0
 Requires-Dist: matplotlib>=3.6.0
 Requires-Dist: nibabel>=3.2.0
-Requires-Dist: nilearn!=0.10.3,>=0.10.1
+Requires-Dist: nilearn!=0.10.3,<0.12.0,>=0.10.1
 Requires-Dist: numba>=0.57.0
 Requires-Dist: numpy>=1.22
 Requires-Dist: pandas>=2.0.0

{nimare-0.5.1rc2.dist-info → nimare-0.5.3.dist-info}/RECORD

@@ -1,7 +1,7 @@
 benchmarks/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 benchmarks/bench_cbma.py,sha256=fg_EER8hohi6kD1Hno_uXsFntKuCLTvseu-6OqkHkoU,1382
 nimare/__init__.py,sha256=HHIq3EimSZSf3zJSDwuTjBig1GbRwHGYfRLSqI3yleE,802
-nimare/_version.py,sha256=dMS6-mn4JXYLOJBu0IjIYc4ADx2PG2tdEfB8hifIGsc,500
+nimare/_version.py,sha256=FqbLq6rX96jf92mbcN6-SQe5m-vCbd5kkyZJd7JgpDE,497
 nimare/base.py,sha256=9DlcRB2mW759p7XqpKG3wRE-MmPsEPiYTbq6V1Yile4,7826
 nimare/cli.py,sha256=Zvy5jN2KopH_MBke-gm8A0DbBZmIFGvnE1tjhbYib9I,3695
 nimare/correct.py,sha256=2eI0jR6_odND-2CzSlaxRU2um6ccLSapd7ERAYteBnE,17110
@@ -14,7 +14,7 @@ nimare/nimads.py,sha256=2s5QnaLvrBt-kMrImGhG_p6r0unysufIIcPczr2bG0c,24342
 nimare/results.py,sha256=7szcyR6PkZAXBqbIGGWrw1nW9j9QCdpdl4MxUK_1Wzc,8190
 nimare/stats.py,sha256=XhXfFj6KHTPVSTXhbEid0qt8HLqJD82Bl5T23qmaf40,10098
 nimare/transforms.py,sha256=_kZO8N3IEHxd6Ir4IcewZtkWHpFknnjEnjsaD9b-1pg,30136
-nimare/utils.py,sha256=rMuT1mhEYrb3R_2EAsz5A_f5VPWXzqRkH_saQTFybm4,47002
+nimare/utils.py,sha256=ku22q1qaCRq-rtorSlOPawbUGgA0LmNU6b7zXyFVaGM,47046
 nimare/annotate/__init__.py,sha256=hTla1yFYTJ8PDjm72ReeHa3qf0Que50Ww0fqz3Z86JI,434
 nimare/annotate/cogat.py,sha256=xzrepAuTkRenbECn4XYwgyul45r0tIMxCDKQV_ZFVb8,7457
 nimare/annotate/gclda.py,sha256=P2OQjuJn3DX0GVPte_VIVZf0LfO-yE_OhLbs6DwMaHQ,42592
@@ -41,7 +41,7 @@ nimare/meta/cbma/ale.py,sha256=ZNjXC4MXhfSHvrTRppY04NkGtz_Iri696k5QMuBog7o,39273
 nimare/meta/cbma/base.py,sha256=-gJ4hW6_6T5oto3pre9GbWodHWRmPS2WZ1LJjB0BtMI,38382
 nimare/meta/cbma/mkda.py,sha256=V5vSQodiLZoZhkYPhous0a_-1pZoRjAIL8gmGyyoezc,60397
 nimare/reports/__init__.py,sha256=zGfrOPlMq2lTorKNEpyPblArFCnsvz3dRsvOHy_Ciag,428
-nimare/reports/base.py,sha256=wN3r8-f4Z4B8TxgruAGFrIjQRoWamuhsln-a7ubUcXo,23544
+nimare/reports/base.py,sha256=6iGk0zF6zxIdNTNMyiloyPbafbUbUMMnvE4NkAG1KAE,23648
 nimare/reports/default.yml,sha256=zTcWUlC9ntvacMcIIUAJPoFV8XrvPGqCH2uwovwB4Wc,6003
 nimare/reports/figures.py,sha256=lxa20_n3PZ1aJMvkbzYqaptJZTUpJotQT-Rjwv-DAz0,21835
 nimare/reports/report.tpl,sha256=ZweYiJF80zdaIwK1iawAl1pwmBZdPjpxXxY5C0U5yVs,5518
@@ -111,9 +111,9 @@ nimare/workflows/cbma.py,sha256=2jYJs9kH7_LzFP6d7-oTHiTTgAFbtmiBNtBXSCSZPjg,7052
 nimare/workflows/ibma.py,sha256=lAkWtqSqnZiUUV460Bh046U9LeGhnry3bl8BFi-tx7s,4289
 nimare/workflows/macm.py,sha256=mVUBeKbTawhU93ApnkunZSUXZWo7qBPrM3dMGWfl0ik,2531
 nimare/workflows/misc.py,sha256=OWgHlSAnRI0-5Seii-bd48piIYsfEAF_aNKGorH1yJQ,1827
-nimare-0.5.1rc2.dist-info/LICENSE,sha256=PWPXnCGWh-FMiBZ61OnQ2BHFjPPlJJ7F0kFx_ryzp-M,1074
-nimare-0.5.1rc2.dist-info/METADATA,sha256=mgIk3xAyq73cqR2xbeRuDK4S1SVBAqYTB6fBY_xnqdU,4698
-nimare-0.5.1rc2.dist-info/WHEEL,sha256=tZoeGjtWxWRfdplE7E3d45VPlLNQnvbKiYnx7gwAy8A,92
-nimare-0.5.1rc2.dist-info/entry_points.txt,sha256=3w_hk9N2PWnKZkCaJyDlc0_kdn3rh35aiI21rSdvsuA,44
-nimare-0.5.1rc2.dist-info/top_level.txt,sha256=XnOcEXMs0BxdI8t3_ksTl96T8hykn9L7-bxLLraVrTI,18
-nimare-0.5.1rc2.dist-info/RECORD,,
+nimare-0.5.3.dist-info/LICENSE,sha256=PWPXnCGWh-FMiBZ61OnQ2BHFjPPlJJ7F0kFx_ryzp-M,1074
+nimare-0.5.3.dist-info/METADATA,sha256=27p5cjwoChWmR6EcV2hiqYxUnxbNJQKfWGzkSlnA9Rk,4703
+nimare-0.5.3.dist-info/WHEEL,sha256=tZoeGjtWxWRfdplE7E3d45VPlLNQnvbKiYnx7gwAy8A,92
+nimare-0.5.3.dist-info/entry_points.txt,sha256=3w_hk9N2PWnKZkCaJyDlc0_kdn3rh35aiI21rSdvsuA,44
+nimare-0.5.3.dist-info/top_level.txt,sha256=XnOcEXMs0BxdI8t3_ksTl96T8hykn9L7-bxLLraVrTI,18
+nimare-0.5.3.dist-info/RECORD,,