ngio 0.5.0b7__py3-none-any.whl → 0.5.1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (28) hide show
  1. ngio/common/_masking_roi.py +18 -5
  2. ngio/hcs/_plate.py +30 -24
  3. ngio/images/_abstract_image.py +65 -12
  4. ngio/images/_create_synt_container.py +1 -1
  5. ngio/images/_create_utils.py +60 -61
  6. ngio/images/_image.py +342 -86
  7. ngio/images/_label.py +31 -31
  8. ngio/images/_masked_image.py +2 -2
  9. ngio/images/_ome_zarr_container.py +247 -96
  10. ngio/io_pipes/_match_shape.py +10 -14
  11. ngio/io_pipes/_ops_slices.py +6 -4
  12. ngio/io_pipes/_ops_slices_utils.py +8 -7
  13. ngio/ome_zarr_meta/_meta_handlers.py +2 -26
  14. ngio/ome_zarr_meta/ngio_specs/__init__.py +2 -0
  15. ngio/ome_zarr_meta/ngio_specs/_axes.py +161 -58
  16. ngio/ome_zarr_meta/ngio_specs/_ngio_hcs.py +78 -32
  17. ngio/ome_zarr_meta/ngio_specs/_ngio_image.py +36 -0
  18. ngio/ome_zarr_meta/v04/_v04_spec.py +2 -21
  19. ngio/ome_zarr_meta/v05/_v05_spec.py +4 -22
  20. ngio/resources/__init__.py +1 -1
  21. ngio/resources/resource_model.py +1 -1
  22. ngio/tables/_tables_container.py +39 -7
  23. ngio/tables/v1/_roi_table.py +4 -4
  24. ngio/utils/_zarr_utils.py +8 -15
  25. {ngio-0.5.0b7.dist-info → ngio-0.5.1.dist-info}/METADATA +3 -2
  26. {ngio-0.5.0b7.dist-info → ngio-0.5.1.dist-info}/RECORD +28 -28
  27. {ngio-0.5.0b7.dist-info → ngio-0.5.1.dist-info}/WHEEL +0 -0
  28. {ngio-0.5.0b7.dist-info → ngio-0.5.1.dist-info}/licenses/LICENSE +0 -0
{ngio-0.5.0b7.dist-info → ngio-0.5.1.dist-info}/RECORD RENAMED
@@ -1,7 +1,7 @@
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  ngio/__init__.py,sha256=kyInohhWrBs4qkbMYFIQeAiy1CDpvbSOtXB4buFocbw,1535
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  ngio/common/__init__.py,sha256=F3zAHQIhwig1xUA-SpmFVRtMeOrEj926-nHWhj-wS6c,684
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  ngio/common/_dimensions.py,sha256=w8PYgyWxA8hgJETjFbw5CXf7WrasCL5FbzgfL1in86M,11361
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- ngio/common/_masking_roi.py,sha256=rWOvhT08KfxX5djvUsX6LsUVofyU0Fq5LcUmpOYElDg,4757
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+ ngio/common/_masking_roi.py,sha256=-2IzQvaIpdgAxS8LY3DRb-Eax5efX6H0OhV7lNVdL1E,5202
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  ngio/common/_pyramid.py,sha256=7kbvCY4J0hLl_iV5oT267j_h3UTkbqIdltqHcrwicvw,17571
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  ngio/common/_roi.py,sha256=IM0rYaekNvEDSMctYbAEZkeG9iPaJ1qjtnJ9kOVV8as,11416
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  ngio/common/_synt_images_utils.py,sha256=B6uYOW1NyrM06YMR-csca3_YnAAkPRTbvnbLdy9tk9E,3188
@@ -15,50 +15,50 @@ ngio/experimental/iterators/_mappers.py,sha256=VVVsjems57wJUnWeufUFcgqa23k7VPeFL
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  ngio/experimental/iterators/_rois_utils.py,sha256=5foGjt3qrACNrO29LlvSUbJ4yfI0z6MhU2oVCzEU214,4363
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  ngio/experimental/iterators/_segmentation.py,sha256=xzotGvTn04HPeMeXZ_URnQqWco6d2lH6Ng6vkCUh9NM,9153
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  ngio/hcs/__init__.py,sha256=G8j9vD-liLeB_UeGtKYIgshWvJnUA6ks9GwjvWBLdHs,357
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- ngio/hcs/_plate.py,sha256=l2a2ZMniutxRzZ88HOYwajug-svr6OanREG5mTy39x0,45773
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+ ngio/hcs/_plate.py,sha256=nEHY6PbW_2WxhxE0vB_HKjun3YwaesbabMGJmZujoxk,45925
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  ngio/images/__init__.py,sha256=9Whvt7GTiCgT_vXaEEqGnDaY1-UsRk3dhLTv091F_g4,1211
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- ngio/images/_abstract_image.py,sha256=SmVuFLrtqj2IVAFYrO6rWshsTO2G_wKd0WgW5TzQA18,34186
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- ngio/images/_create_synt_container.py,sha256=gCuT1SqZXJ_s7WRI_KbcoG1zrmEqFYKxKVZX04bR__A,5402
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- ngio/images/_create_utils.py,sha256=KohLQppIqECB65VzHaOejH3xHo9YcugmKIJ0WKam8fI,14348
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- ngio/images/_image.py,sha256=z5M4cfT_XmAGBQSHoUFn7BvwrmzwV0WjMIMcSIoKfPA,35246
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- ngio/images/_label.py,sha256=6H_nUobvmO2wvI_r0BJtBK47sprYtIzuoxSn8zVKET8,15905
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- ngio/images/_masked_image.py,sha256=YhbBzgPZMav6rX0WYue1BaxAzEIsfaQrxUIOK6ZWZcw,18848
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- ngio/images/_ome_zarr_container.py,sha256=YheAO5nGRdZv_FT-ue-wJ0Cjz2aWhR4aIkJGo-tXgcE,49262
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+ ngio/images/_abstract_image.py,sha256=IlFLH4maw2gAt29pLJzMtnPWcdzgbna35CIDR5hjGsg,35953
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+ ngio/images/_create_synt_container.py,sha256=4hZa0wKfI5RL30vsPE841SCVhWNb9Kj8kJiaTsD-0BA,5399
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+ ngio/images/_create_utils.py,sha256=1XsCmNrIFAoQVfsHcRde2HrtrIuY1k6mn9olwrNwQUs,14201
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+ ngio/images/_image.py,sha256=HKuzpWNix-gtSRgF5VjvJOBZMcr_AQJgI9MmoLYmPWk,45303
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+ ngio/images/_label.py,sha256=iC9XPyM5SOWcI3Z3PZ0M1RUUCCUbBQ98zdrchva00Jw,16002
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+ ngio/images/_masked_image.py,sha256=25BFnEHTqWdq5ImLs6dbo_X-ryGLIL7vJ2mmbx4Npv8,18834
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+ ngio/images/_ome_zarr_container.py,sha256=JNXC7oXzCShVQMxt4NO1tPKF06FknoTlZAYWTY6QkHk,55557
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  ngio/images/_table_ops.py,sha256=jFv_AMqoB4JBpoWsMtZppZVW7dAOC_u-JpfNm8b33kY,15292
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  ngio/io_pipes/__init__.py,sha256=arW_7GWzZs82kPNKdm_6B1sIDFV0lWwp-ZaORr9Q1FQ,2412
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  ngio/io_pipes/_io_pipes.py,sha256=l85mmjj1l0uYU3qzsSHg9l8cMIEevInm_MTD-8MlXgw,10603
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  ngio/io_pipes/_io_pipes_masked.py,sha256=uvfNIuW8prWux3fZ-a25l44zDfZW4qBaXZEm0TkhloA,16916
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  ngio/io_pipes/_io_pipes_roi.py,sha256=HJHlItx2nsFYcE4OjvVR-W0lFMMK8CcyYK23dKUrP8w,4472
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  ngio/io_pipes/_io_pipes_types.py,sha256=PcRdnjBJIsXcDT1_dbH2LZiH6d3z6D7y48cmybyZCXk,1358
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- ngio/io_pipes/_match_shape.py,sha256=e3cQM6BI8n2YODmU6wgnFoaguwRVZw9bk5eafzmcTBM,13185
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+ ngio/io_pipes/_match_shape.py,sha256=hcX3d47hszQoDnV6my1mZvpt2GY6UQ-yfiSsTvlHd2U,12983
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  ngio/io_pipes/_ops_axes.py,sha256=Geg4ZXxB0njWWopX9YeiwRJJ9Ef2GKfG0NIUafOmi2c,10043
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- ngio/io_pipes/_ops_slices.py,sha256=hHMIOQ_niUSK9uFl8P2-10dP_K4GX3Do6vivN4fGRE0,14520
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- ngio/io_pipes/_ops_slices_utils.py,sha256=mps_I0eTI4gdBVM9MCKsd8rCyefdo9bIK9fEmqwr23E,6633
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+ ngio/io_pipes/_ops_slices.py,sha256=bB15nSxSurgKUGJvRwCo6aBNMhac4knALBN-vuyolIY,14541
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+ ngio/io_pipes/_ops_slices_utils.py,sha256=wZCoMa7D_fX6QcjLjrZi1lCFhHe3vQuNAQ3Tjk92mzU,6621
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  ngio/io_pipes/_ops_transforms.py,sha256=uITs6v6sZ7DQ_Hpw3JdX8MuPOzir-bihvGzY84Qn4wY,2934
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  ngio/io_pipes/_zoom_transform.py,sha256=WBY1tO6_Qhf8FaDujfTdipuuqFf7PSi204wx5VKKs88,6884
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  ngio/ome_zarr_meta/__init__.py,sha256=7VDrX-ev5Gg2zQfGsrlj-YPTeIGzbplxbptxw1u-vU0,1491
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- ngio/ome_zarr_meta/_meta_handlers.py,sha256=M8bHeWUjSgPCg-JTvnbwoL5sTPyGrWb2j8d-3r0Ua6Q,16172
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- ngio/ome_zarr_meta/ngio_specs/__init__.py,sha256=sYGlV2-0-z-a1gDFlk_pCjgcdRsgbwBf72vM2ZAVTtQ,1750
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- ngio/ome_zarr_meta/ngio_specs/_axes.py,sha256=CY63mWf7_ALoi7o_1QDVK1lAG56xN0gvgwfcuNRmMIg,16446
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+ ngio/ome_zarr_meta/_meta_handlers.py,sha256=u6a-z-q4Gu0TSahpD5qCmpIOLwnJqNjfoAnOyzzCyrg,14794
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+ ngio/ome_zarr_meta/ngio_specs/__init__.py,sha256=FukhukN9ksW-SDUiAtmiwpQ7c9qWAyq0cnTnSqZLsVc,1800
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+ ngio/ome_zarr_meta/ngio_specs/_axes.py,sha256=qbco_LakPh8CqYWNY4tbMRASTwB59gEtiaWX_MTe9lc,20428
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  ngio/ome_zarr_meta/ngio_specs/_channels.py,sha256=TDxIy-yVc2YaWPIFJRYnYwZbA8O5Ee_OiWppHYrEdpU,16647
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  ngio/ome_zarr_meta/ngio_specs/_dataset.py,sha256=5YdAplk90koX3vjoIJimms-CJYxt095rJ9YagZSQg88,2872
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- ngio/ome_zarr_meta/ngio_specs/_ngio_hcs.py,sha256=-YOC39YXDk5ojFkpvj8Vup6A3tAtHotV9e8QNZ0l_Cs,16999
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- ngio/ome_zarr_meta/ngio_specs/_ngio_image.py,sha256=g32ytm4jxDR5duHyO6_kU0MrcE2NzI8V4EWCYanuIrI,14591
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+ ngio/ome_zarr_meta/ngio_specs/_ngio_hcs.py,sha256=pPM5adqJwKTBM_u7sXNYwt1Z0lLmrcU5pSA5FVH1F-U,18384
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+ ngio/ome_zarr_meta/ngio_specs/_ngio_image.py,sha256=LJE_bA8e5KIEm_7pr15Etda-KhKCAqjWCUFHoCnwTag,15654
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  ngio/ome_zarr_meta/ngio_specs/_pixel_size.py,sha256=4VF1djY9T5tp6GCJXppFrUJwALI1XgIm0imoM5rNvdE,3876
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  ngio/ome_zarr_meta/v04/__init__.py,sha256=tRt3zGelL948EoLfy_gW-LKvJcBbSkbT9kwIgU0hQV8,721
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  ngio/ome_zarr_meta/v04/_custom_models.py,sha256=5GxiDERvLuvq4QvApcA6EiKLS6hLFX1R0R_9rSaa85A,530
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- ngio/ome_zarr_meta/v04/_v04_spec.py,sha256=W8XPtMhDUuISPpwT41dZDMSSUCtdgLhTWJPj1WqJ7i0,15389
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+ ngio/ome_zarr_meta/v04/_v04_spec.py,sha256=S9a9Z3wYLI-WHnOZsg3RKPAcovssqGIr-x8GVAjV0IU,14321
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  ngio/ome_zarr_meta/v05/__init__.py,sha256=B6VIUkrm5W4lcrvy4R7c7NZ6dEx-0a1AhqhZ7snCnCo,721
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  ngio/ome_zarr_meta/v05/_custom_models.py,sha256=ZN3bE9nwx4y3tElhsYafI4S2zp_WzdkQKcyuuBiaXXo,530
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- ngio/ome_zarr_meta/v05/_v05_spec.py,sha256=avix0AIcRS143gKTb_C8Ab2BOhRU7tKlWdwj9jy6XTw,16312
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- ngio/resources/__init__.py,sha256=4E4TXTNYEgRHt26C1XcC4pPobJJsmZRYm1Ml4uAuAkE,1664
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- ngio/resources/resource_model.py,sha256=eE1m0dyk-2psPC4X8Ifyan524QHUOd52TEQdvoU0m8I,861
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+ ngio/ome_zarr_meta/v05/_v05_spec.py,sha256=pCIoSsYmJjmrZ3jbgkdio7e6qKV2_ggd4WQe4zBSt8M,15225
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+ ngio/resources/__init__.py,sha256=pOo2YqxDlzTSWo6qyYQzXZbIKWSUoEl3iqX41Iw-oQI,1661
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+ ngio/resources/resource_model.py,sha256=mmx8gbfDHBg_gVNvtZZydAZDATdmcaM8DsOfnRVrXXA,858
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  ngio/resources/20200812-CardiomyocyteDifferentiation14-Cycle1_B03/mask.png,sha256=g3QmxQdmeciAtBe5cTCRfR6yw3keG9cBYfjizMo6EGo,11890
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  ngio/resources/20200812-CardiomyocyteDifferentiation14-Cycle1_B03/nuclei.png,sha256=Yw0k5pn2EHDMWTwyb7N51NX7WVk6-MlwfP9WZrhY-Ic,19446
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  ngio/resources/20200812-CardiomyocyteDifferentiation14-Cycle1_B03/raw.jpg,sha256=82lejQAIokj5w9g-qqhysDTWpHtNvJTkdURG_BjqIxQ,37743
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  ngio/tables/__init__.py,sha256=_BV3sclNMLITu_J8_3DkkUrCB6Kro0HzeWLDCD1ivKM,877
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  ngio/tables/_abstract_table.py,sha256=rwGa47TzbFmosucBWVfFq6JEXtgGvOdUVtU9DIelV88,8204
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- ngio/tables/_tables_container.py,sha256=1HXIfofOtwJr6XQ_ILM8-rr7Cxq1XmV4BzL5Q2g2tLk,13097
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+ ngio/tables/_tables_container.py,sha256=4frJpcfuW-J8N13enzFuH6wQIVwRVRKN7FOLWx_VxRc,14035
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  ngio/tables/backends/__init__.py,sha256=MwSRXNF1rWQBFOTDA_vT3oGoNZpviVgytsL5Txnu08I,1619
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  ngio/tables/backends/_abstract_backend.py,sha256=M1ogsBpWBiQMV65YweZhA845PAtkzG2BsZCPN_7Xp8U,7613
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  ngio/tables/backends/_anndata.py,sha256=T67N-SPNO4eqe7-VGAUfgtwaSy_o2DqCvZgE2yRH5jE,4582
@@ -73,7 +73,7 @@ ngio/tables/v1/__init__.py,sha256=Wr1_9RZFpaN8FYMTnxT9Yjkw4AS7y9FMWailmB_uj5g,61
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  ngio/tables/v1/_condition_table.py,sha256=T0Uq5BKkmMoEspt_Rx0U99Ow6S9GAMZDHqvUO5obCAM,1780
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  ngio/tables/v1/_feature_table.py,sha256=n9uMHwoBh-_dlOhUXCFbmAjXFVXncNCR3SjE2qzXI68,3821
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  ngio/tables/v1/_generic_table.py,sha256=1ktJHeuv7U1g5Z8PFUuTkCjOzcYMQd8xegKHKUedJB8,1240
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- ngio/tables/v1/_roi_table.py,sha256=DuKJlDmtQtLOfL0g4CSdncfm4hBsKWG6F6fkMUpt4Nk,17821
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+ ngio/tables/v1/_roi_table.py,sha256=RbiJJTEnZlt_PONe5gP7OewaH3ysaDfWld9gJFAv7BQ,17833
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  ngio/transforms/__init__.py,sha256=JA0-Ui7skbXkm9ofN-AEhU1FTLutkMkwTdVD-310frQ,113
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  ngio/transforms/_zoom.py,sha256=otyE-vxFnywUJ8U4mHjat-bNG_7_jv62ckTpqDMxyVQ,550
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  ngio/utils/__init__.py,sha256=d2OHQGMFPpf8-_ipuqquxtqCNGJpX5yXt34A65nScUU,1037
@@ -81,8 +81,8 @@ ngio/utils/_cache.py,sha256=Ey9fgc_BTdMyqg6c80C0CuGDhOafln8-3e_1MQ0MFzw,1283
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  ngio/utils/_datasets.py,sha256=YOV367skFA8nbKAqbyK0EsUU7E9UId_u5ButuLesrzk,5896
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  ngio/utils/_errors.py,sha256=pKQ12LUjQLYE1nUawemA5h7HsgznjaSvV1n2PQU33N0,759
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  ngio/utils/_fractal_fsspec_store.py,sha256=RdcCFOgHexRKX9zZvJV5RI-5OPc7VOPS6q_IeRxm24I,1548
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- ngio/utils/_zarr_utils.py,sha256=MVbW-a0S3iuzMaknqkliJa_lp8i6mEO4Q2YN2XxmeDw,18158
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- ngio-0.5.0b7.dist-info/METADATA,sha256=LRMT4aboyJ5z66FSJvBwrXkFxEz2YTX7Diu340KSc8Y,6382
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- ngio-0.5.0b7.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
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- ngio-0.5.0b7.dist-info/licenses/LICENSE,sha256=UgN_a1QCeNh9rZWfz-wORQFxE3elQzLWPQaoK6N6fxQ,1502
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- ngio-0.5.0b7.dist-info/RECORD,,
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+ ngio/utils/_zarr_utils.py,sha256=Fe3c622cW-1x8DpDsgjH5t-W7v3GaXDZdYTiwDhUv9w,17966
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+ ngio-0.5.1.dist-info/METADATA,sha256=MnZkYEVyd27The4ItPI2IjDQbzqfh4zvCCFscFsEjAc,6424
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+ ngio-0.5.1.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
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+ ngio-0.5.1.dist-info/licenses/LICENSE,sha256=UgN_a1QCeNh9rZWfz-wORQFxE3elQzLWPQaoK6N6fxQ,1502
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+ ngio-0.5.1.dist-info/RECORD,,
{ngio-0.5.0b7.dist-info → ngio-0.5.1.dist-info}/WHEEL RENAMED
File without changes