ngio 0.5.0b1__py3-none-any.whl → 0.5.0b2__py3-none-any.whl

ngio/__init__.py

@@ -37,6 +37,7 @@ from ngio.ome_zarr_meta.ngio_specs import (
     NgffVersions,
     PixelSize,
 )
+from ngio.utils import NgioSupportedStore, StoreOrGroup
 
 __all__ = [
     "AxesSetup",
@@ -47,12 +48,14 @@ __all__ = [
     "ImageInWellPath",
     "Label",
     "NgffVersions",
+    "NgioSupportedStore",
     "OmeZarrContainer",
     "OmeZarrPlate",
     "OmeZarrWell",
     "PixelSize",
     "Roi",
     "RoiSlice",
+    "StoreOrGroup",
     "create_empty_ome_zarr",
     "create_empty_plate",
     "create_empty_well",

ngio/hcs/_plate.py

@@ -15,6 +15,7 @@ from ngio.images import (
     list_image_tables_async,
 )
 from ngio.ome_zarr_meta import (
+    DefaultNgffVersion,
     ImageInWellPath,
     NgffVersions,
     NgioPlateMeta,
@@ -778,7 +779,8 @@ class OmeZarrPlate:
         self,
         store: StoreOrGroup,
         plate_name: str | None = None,
-        version: NgffVersions = "0.4",
+        version: NgffVersions | None = None,
+        ngff_version: NgffVersions = DefaultNgffVersion,
         keep_acquisitions: bool = False,
         cache: bool = False,
         overwrite: bool = False,
@@ -788,7 +790,8 @@ class OmeZarrPlate:
         Args:
             store (StoreOrGroup): The Zarr store or group that stores the plate.
             plate_name (str | None): The name of the new plate.
-            version (NgffVersion): The version of the new plate.
+            version (NgffVersion | None): Deprecated. Please use 'ngff_version' instead.
+            ngff_version (NgffVersion): The NGFF version to use for the new plate.
             keep_acquisitions (bool): Whether to keep the acquisitions in the new plate.
             cache (bool): Whether to use a cache for the zarr group metadata.
             overwrite (bool): Whether to overwrite the existing plate.
@@ -797,6 +800,7 @@ class OmeZarrPlate:
             ome_zarr_plate=self,
             store=store,
             plate_name=plate_name,
+            ngff_version=ngff_version,
             version=version,
             keep_acquisitions=keep_acquisitions,
             cache=cache,
@@ -955,6 +959,25 @@ class OmeZarrPlate:
             name=name, table=table, backend=backend, overwrite=overwrite
         )
 
+    def delete_table(self, name: str, missing_ok: bool = False) -> None:
+        """Delete a table from the group.
+
+        Args:
+            name (str): The name of the table to delete.
+            missing_ok (bool): If True, do not raise an error if the table does not
+                exist.
+
+        """
+        table_container = self._get_tables_container(create_mode=False)
+        if table_container is None and missing_ok:
+            return
+        if table_container is None:
+            raise NgioValueError(
+                f"No tables found in the image, cannot delete {name}. "
+                "Set missing_ok=True to ignore this error."
+            )
+        table_container.delete(name=name, missing_ok=missing_ok)
+
     def list_image_tables(
         self,
         acquisition: int | None = None,
@@ -1157,7 +1180,6 @@ def open_ome_zarr_plate(
 def _create_empty_plate_from_meta(
     store: StoreOrGroup,
     meta: NgioPlateMeta,
-    version: NgffVersions = "0.4",
     overwrite: bool = False,
 ) -> ZarrGroupHandler:
     """Create an empty OME-Zarr plate from metadata."""
@@ -1171,7 +1193,8 @@ def create_empty_plate(
     store: StoreOrGroup,
     name: str,
     images: list[ImageInWellPath] | None = None,
-    version: NgffVersions = "0.4",
+    version: NgffVersions | None = None,
+    ngff_version: NgffVersions = DefaultNgffVersion,
     cache: bool = False,
     overwrite: bool = False,
 ) -> OmeZarrPlate:
@@ -1182,18 +1205,26 @@ def create_empty_plate(
         name (str): The name of the plate.
         images (list[ImageInWellPath] | None): A list of images to add to the plate.
             If None, no images are added. Defaults to None.
-        version (NgffVersion): The version of the new plate.
+        version (NgffVersion | None): Deprecated. Please use 'ngff_version' instead.
+        ngff_version (NgffVersion): The NGFF version to use for the new plate.
         cache (bool): Whether to use a cache for the zarr group metadata.
         overwrite (bool): Whether to overwrite the existing plate.
     """
+    if version is not None:
+        warnings.warn(
+            "The 'version' argument is deprecated, and will be removed in ngio=0.3. "
+            "Please use 'ngff_version' instead.",
+            DeprecationWarning,
+            stacklevel=2,
+        )
+        ngff_version = version
     plate_meta = NgioPlateMeta.default_init(
         name=name,
-        version=version,
+        ngff_version=ngff_version,
     )
     group_handler = _create_empty_plate_from_meta(
         store=store,
         meta=plate_meta,
-        version=version,
         overwrite=overwrite,
     )
 
@@ -1218,7 +1249,8 @@ def derive_ome_zarr_plate(
     ome_zarr_plate: OmeZarrPlate,
     store: StoreOrGroup,
     plate_name: str | None = None,
-    version: NgffVersions = "0.4",
+    version: NgffVersions | None = None,
+    ngff_version: NgffVersions = DefaultNgffVersion,
     keep_acquisitions: bool = False,
     cache: bool = False,
     overwrite: bool = False,
@@ -1229,24 +1261,33 @@ def derive_ome_zarr_plate(
         ome_zarr_plate (OmeZarrPlate): The existing OME-Zarr plate.
         store (StoreOrGroup): The Zarr store or group that stores the plate.
         plate_name (str | None): The name of the new plate.
-        version (NgffVersion): The version of the new plate.
+        version (NgffVersion | None): Deprecated. Please use 'ngff_version' instead.
+        ngff_version (NgffVersion): The NGFF version to use for the new plate.
         keep_acquisitions (bool): Whether to keep the acquisitions in the new plate.
         cache (bool): Whether to use a cache for the zarr group metadata.
         overwrite (bool): Whether to overwrite the existing plate.
     """
+    if version is not None:
+        warnings.warn(
+            "The 'version' argument is deprecated, and will be removed in ngio=0.3. "
+            "Please use 'ngff_version' instead.",
+            DeprecationWarning,
+            stacklevel=2,
+        )
+        ngff_version = version
+
     if plate_name is None:
         plate_name = ome_zarr_plate.meta.plate.name
 
     new_meta = ome_zarr_plate.meta.derive(
         name=plate_name,
-        version=version,
+        ngff_version=ngff_version,
         keep_acquisitions=keep_acquisitions,
     )
     _ = _create_empty_plate_from_meta(
         store=store,
         meta=new_meta,
         overwrite=overwrite,
-        version=version,
     )
     return open_ome_zarr_plate(
         store=store,
@@ -1277,7 +1318,8 @@ def open_ome_zarr_well(
 
 def create_empty_well(
     store: StoreOrGroup,
-    version: NgffVersions = "0.4",
+    version: NgffVersions | None = None,
+    ngff_version: NgffVersions = DefaultNgffVersion,
     cache: bool = False,
     overwrite: bool = False,
 ) -> OmeZarrWell:
@@ -1285,14 +1327,25 @@ def create_empty_well(
 
     Args:
         store (StoreOrGroup): The Zarr store or group that stores the well.
-        version (NgffVersion): The version of the new well.
+        version (NgffVersion | None): Deprecated. Please use 'ngff_version' instead.
+        ngff_version (NgffVersion): The version of the new well.
         cache (bool): Whether to use a cache for the zarr group metadata.
         overwrite (bool): Whether to overwrite the existing well.
     """
+    if version is not None:
+        warnings.warn(
+            "The 'version' argument is deprecated, and will be removed in ngio=0.3. "
+            "Please use 'ngff_version' instead.",
+            DeprecationWarning,
+            stacklevel=2,
+        )
+        ngff_version = version
     group_handler = ZarrGroupHandler(
         store=store, cache=True, mode="w" if overwrite else "w-"
     )
-    update_ngio_well_meta(group_handler, NgioWellMeta.default_init())
+    update_ngio_well_meta(
+        group_handler, NgioWellMeta.default_init(ngff_version=ngff_version)
+    )
 
     return open_ome_zarr_well(
         store=store,

ngio/images/_label.py

@@ -182,6 +182,31 @@ class LabelsContainer:
         )
         return Label(group_handler, path, label_meta_handler)
 
+    def delete(self, name: str, missing_ok: bool = False) -> None:
+        """Delete a label from the group.
+
+        Args:
+            name (str): The name of the label to delete.
+            missing_ok (bool): If True, do not raise an error if the label does not
+                exist.
+
+        """
+        existing_labels = self.list()
+        if name not in existing_labels:
+            if missing_ok:
+                return
+            raise NgioValueError(
+                f"Label '{name}' not found in the Labels group. "
+                f"Available labels: {existing_labels}"
+            )
+
+        self._group_handler.delete_group(name)
+        existing_labels.remove(name)
+        update_meta = NgioLabelsGroupMeta(
+            labels=existing_labels, version=self.meta.version
+        )
+        self._meta_handler.update_meta(update_meta)
+
     def derive(
         self,
         name: str,

ngio/images/_ome_zarr_container.py

@@ -674,6 +674,25 @@ class OmeZarrContainer:
             name=name, table=table, backend=backend, overwrite=overwrite
         )
 
+    def delete_table(self, name: str, missing_ok: bool = False) -> None:
+        """Delete a table from the group.
+
+        Args:
+            name (str): The name of the table to delete.
+            missing_ok (bool): If True, do not raise an error if the table does not
+                exist.
+
+        """
+        table_container = self._get_tables_container(create_mode=False)
+        if table_container is None and missing_ok:
+            return
+        if table_container is None:
+            raise NgioValueError(
+                f"No tables found in the image, cannot delete {name}. "
+                "Set missing_ok=True to ignore this error."
+            )
+        table_container.delete(name=name, missing_ok=missing_ok)
+
     def list_labels(self) -> list[str]:
         """List all labels in the image."""
         label_container = self._get_labels_container(create_mode=False)
@@ -739,6 +758,25 @@ class OmeZarrContainer:
             masking_roi_table=masking_table,
         )
 
+    def delete_label(self, name: str, missing_ok: bool = False) -> None:
+        """Delete a label from the group.
+
+        Args:
+            name (str): The name of the label to delete.
+            missing_ok (bool): If True, do not raise an error if the label does not
+                exist.
+
+        """
+        label_container = self._get_labels_container(create_mode=False)
+        if label_container is None and missing_ok:
+            return
+        if label_container is None:
+            raise NgioValueError(
+                f"No labels found in the image, cannot delete {name}. "
+                "Set missing_ok=True to ignore this error."
+            )
+        label_container.delete(name=name, missing_ok=missing_ok)
+
     def derive_label(
         self,
         name: str,

ngio/ome_zarr_meta/__init__.py

@@ -16,6 +16,7 @@ from ngio.ome_zarr_meta._meta_handlers import (
 from ngio.ome_zarr_meta.ngio_specs import (
     AxesHandler,
     Dataset,
+    DefaultNgffVersion,
     ImageInWellPath,
     NgffVersions,
     NgioImageMeta,
@@ -31,6 +32,7 @@ from ngio.ome_zarr_meta.ngio_specs import (
 __all__ = [
     "AxesHandler",
     "Dataset",
+    "DefaultNgffVersion",
     "ImageInWellPath",
     "ImageMetaHandler",
     "LabelMetaHandler",

ngio/ome_zarr_meta/ngio_specs/_ngio_hcs.py

@@ -62,9 +62,9 @@ class NgioWellMeta(BaseModel):
     @classmethod
     def default_init(
         cls,
-        version: NgffVersions = DefaultNgffVersion,
+        ngff_version: NgffVersions = DefaultNgffVersion,
     ) -> "NgioWellMeta":
-        well = cls(images=[], version=version)
+        well = cls(images=[], version=ngff_version)
         return well
 
     @property
@@ -217,7 +217,7 @@ class NgioPlateMeta(BaseModel):
         cls,
         images: list[ImageInWellPath] | None = None,
         name: str | None = None,
-        version: NgffVersions = DefaultNgffVersion,
+        ngff_version: NgffVersions = DefaultNgffVersion,
     ) -> "NgioPlateMeta":
         plate = cls(
             plate=PlateWithVersion(
@@ -227,9 +227,9 @@ class NgioPlateMeta(BaseModel):
                 wells=[],
                 field_count=None,
                 name=name,
-                version=version,
+                version=ngff_version,
             ),
-            version=version,
+            version=ngff_version,
         )
 
         if images is None:
@@ -503,14 +503,14 @@ class NgioPlateMeta(BaseModel):
     def derive(
         self,
         name: str | None = None,
-        version: NgffVersions | None = None,
+        ngff_version: NgffVersions | None = None,
         keep_acquisitions: bool = False,
     ) -> "NgioPlateMeta":
         """Derive the plate metadata.
 
         Args:
             name (str): The name of the derived plate.
-            version (NgffVersion | None): The version of the derived plate.
+            ngff_version (NgffVersion | None): The version of the derived plate.
                 If None, use the version of the original plate.
             keep_acquisitions (bool): If True, keep the acquisitions in the plate.
         """
@@ -522,8 +522,8 @@ class NgioPlateMeta(BaseModel):
         else:
             acquisitions = None
 
-        if version is None:
-            version = self.version
+        if ngff_version is None:
+            ngff_version = self.version
 
         return NgioPlateMeta(
             plate=PlateWithVersion(
@@ -533,7 +533,7 @@ class NgioPlateMeta(BaseModel):
                 wells=[],
                 field_count=self.plate.field_count,
                 name=name,
-                version=version,
+                version=ngff_version,
             ),
-            version=version,
+            version=ngff_version,
         )

ngio/tables/_tables_container.py

@@ -311,6 +311,27 @@ class TablesContainer:
             backend=backend,
         )  # type: ignore[return-value]
 
+    def delete(self, name: str, missing_ok: bool = False) -> None:
+        """Delete a table from the group.
+
+        Args:
+            name (str): The name of the table to delete.
+            missing_ok (bool): If True, do not raise an error if
+                the table does not exist.
+        """
+        existing_tables = self._get_tables_list()
+        if name not in existing_tables:
+            if missing_ok:
+                return
+            raise NgioValueError(
+                f"Table '{name}' not found in the Tables group. "
+                f"Available tables: {existing_tables}"
+            )
+
+        self._group_handler.delete_group(name)
+        existing_tables.remove(name)
+        self._group_handler.write_attrs({"tables": existing_tables})
+
     def add(
         self,
         name: str,

ngio/utils/__init__.py

@@ -17,6 +17,7 @@ from ngio.utils._fractal_fsspec_store import fractal_fsspec_store
 from ngio.utils._zarr_utils import (
     AccessModeLiteral,
     NgioCache,
+    NgioSupportedStore,
     StoreOrGroup,
     ZarrGroupHandler,
     copy_group,
@@ -29,6 +30,7 @@ __all__ = [
     "NgioError",
     "NgioFileExistsError",
     "NgioFileNotFoundError",
+    "NgioSupportedStore",
     "NgioTableValidationError",
     "NgioValidationError",
     "NgioValueError",

ngio/utils/_zarr_utils.py

@@ -3,7 +3,7 @@
 import json
 import warnings
 from pathlib import Path
-from typing import Literal
+from typing import Literal, TypeAlias
 
 import dask.array as da
 import fsspec
@@ -26,17 +26,11 @@ AccessModeLiteral = Literal["r", "r+", "w", "w-", "a"]
 # StoreLike is more restrictive than it could be
 # but to make sure we can handle the store correctly
 # we need to be more restrictive
-NgioSupportedStore = (
-    str
-    | Path
-    | fsspec.mapping.FSMap
-    | FsspecStore
-    | MemoryStore
-    | LocalStore
-    | ZipStore
+NgioSupportedStore: TypeAlias = (
+    str | Path | fsspec.mapping.FSMap | FsspecStore | MemoryStore | dict | LocalStore
 )
-GenericStore = Store | NgioSupportedStore
-StoreOrGroup = GenericStore | zarr.Group
+GenericStore: TypeAlias = NgioSupportedStore | Store
+StoreOrGroup: TypeAlias = NgioSupportedStore | zarr.Group
 
 
 def _check_store(store) -> NgioSupportedStore:
@@ -398,6 +392,12 @@ class ZarrGroupHandler:
         self._group_cache._cache.pop(path, None)
         self._handlers_cache._cache.pop(path, None)
 
+    def delete_self(self) -> None:
+        """Delete the current group."""
+        if self.group.read_only:
+            raise NgioValueError("Cannot delete a group in read only mode.")
+        self.group.__delitem__("/")
+
     def copy_group(self, dest_group: zarr.Group):
         """Copy the group to a new store."""
         copy_group(self.group, dest_group)

{ngio-0.5.0b1.dist-info → ngio-0.5.0b2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: ngio
-Version: 0.5.0b1
+Version: 0.5.0b2
 Summary: Next Generation file format IO
 Project-URL: homepage, https://github.com/BioVisionCenter/ngio
 Project-URL: repository, https://github.com/BioVisionCenter/ngio

{ngio-0.5.0b1.dist-info → ngio-0.5.0b2.dist-info}/RECORD

@@ -1,4 +1,4 @@
-ngio/__init__.py,sha256=A7o63AVFPNbhOpePPOb-BZvszc52tNqp2NW277h3rAo,1433
+ngio/__init__.py,sha256=kyInohhWrBs4qkbMYFIQeAiy1CDpvbSOtXB4buFocbw,1535
 ngio/common/__init__.py,sha256=F3zAHQIhwig1xUA-SpmFVRtMeOrEj926-nHWhj-wS6c,684
 ngio/common/_dimensions.py,sha256=w8PYgyWxA8hgJETjFbw5CXf7WrasCL5FbzgfL1in86M,11361
 ngio/common/_masking_roi.py,sha256=YSEZ5nv3-TqMrQ04cI70U9NGx3LSy7Z1_cbw_NE-78k,4831
@@ -15,15 +15,15 @@ ngio/experimental/iterators/_mappers.py,sha256=VVVsjems57wJUnWeufUFcgqa23k7VPeFL
 ngio/experimental/iterators/_rois_utils.py,sha256=5foGjt3qrACNrO29LlvSUbJ4yfI0z6MhU2oVCzEU214,4363
 ngio/experimental/iterators/_segmentation.py,sha256=xzotGvTn04HPeMeXZ_URnQqWco6d2lH6Ng6vkCUh9NM,9153
 ngio/hcs/__init__.py,sha256=G8j9vD-liLeB_UeGtKYIgshWvJnUA6ks9GwjvWBLdHs,357
-ngio/hcs/_plate.py,sha256=-8Ffx07s73jKTDKBj11yrJTtfNfwBP0DwUbzJQKPCWM,43503
+ngio/hcs/_plate.py,sha256=l2a2ZMniutxRzZ88HOYwajug-svr6OanREG5mTy39x0,45773
 ngio/images/__init__.py,sha256=9Whvt7GTiCgT_vXaEEqGnDaY1-UsRk3dhLTv091F_g4,1211
 ngio/images/_abstract_image.py,sha256=PyginvViqjKNsnUBF8yX7pUI2fHDJq4QthjeQzJWzDU,31906
 ngio/images/_create_synt_container.py,sha256=Cvg_J0KSxK0PH8IBzlKLIcCwH2vRTuBj-nZo5uOKXXk,5182
 ngio/images/_create_utils.py,sha256=hXVbFM8D_0mZTfBAhcZiuGX2lLXSJCep8THuxpH4d4E,14374
 ngio/images/_image.py,sha256=TiKQXnzm0Mhxx6zmS4CVThcIJLV_guwjbVx7ZOd_0IU,34197
-ngio/images/_label.py,sha256=04qLhTKRi7RgDPnrt8CFq44c8c4IEZlISA4Thfr4Ek0,14831
+ngio/images/_label.py,sha256=MYmYIikKyf2nDqrFd8xZ3nYR-JKe-JneUNuE1jEPHdA,15682
 ngio/images/_masked_image.py,sha256=YhbBzgPZMav6rX0WYue1BaxAzEIsfaQrxUIOK6ZWZcw,18848
-ngio/images/_ome_zarr_container.py,sha256=nKE1lCEelkl_yRroca1wkMEQr2srWzN22x2USdy2AKo,46785
+ngio/images/_ome_zarr_container.py,sha256=aa8l8wfZ8p0YpsdBd8ixvrdgVcdZs6RnSOpUWPE1ixU,48247
 ngio/images/_table_ops.py,sha256=jFv_AMqoB4JBpoWsMtZppZVW7dAOC_u-JpfNm8b33kY,15292
 ngio/io_pipes/__init__.py,sha256=arW_7GWzZs82kPNKdm_6B1sIDFV0lWwp-ZaORr9Q1FQ,2412
 ngio/io_pipes/_io_pipes.py,sha256=l85mmjj1l0uYU3qzsSHg9l8cMIEevInm_MTD-8MlXgw,10603
@@ -36,13 +36,13 @@ ngio/io_pipes/_ops_slices.py,sha256=hHMIOQ_niUSK9uFl8P2-10dP_K4GX3Do6vivN4fGRE0,
 ngio/io_pipes/_ops_slices_utils.py,sha256=mps_I0eTI4gdBVM9MCKsd8rCyefdo9bIK9fEmqwr23E,6633
 ngio/io_pipes/_ops_transforms.py,sha256=uITs6v6sZ7DQ_Hpw3JdX8MuPOzir-bihvGzY84Qn4wY,2934
 ngio/io_pipes/_zoom_transform.py,sha256=WBY1tO6_Qhf8FaDujfTdipuuqFf7PSi204wx5VKKs88,6884
-ngio/ome_zarr_meta/__init__.py,sha256=QO_37uBx44ipOTq8i5DmMg6MUV0JqYA5zAS0Ti8OTEo,1321
+ngio/ome_zarr_meta/__init__.py,sha256=0VVB0r5CTjVqOsC8pa_Jf9H8ctPzTLRmC6LJqWWAs7Q,1371
 ngio/ome_zarr_meta/_meta_handlers.py,sha256=M8bHeWUjSgPCg-JTvnbwoL5sTPyGrWb2j8d-3r0Ua6Q,16172
 ngio/ome_zarr_meta/ngio_specs/__init__.py,sha256=sYGlV2-0-z-a1gDFlk_pCjgcdRsgbwBf72vM2ZAVTtQ,1750
 ngio/ome_zarr_meta/ngio_specs/_axes.py,sha256=CY63mWf7_ALoi7o_1QDVK1lAG56xN0gvgwfcuNRmMIg,16446
 ngio/ome_zarr_meta/ngio_specs/_channels.py,sha256=TDxIy-yVc2YaWPIFJRYnYwZbA8O5Ee_OiWppHYrEdpU,16647
 ngio/ome_zarr_meta/ngio_specs/_dataset.py,sha256=5YdAplk90koX3vjoIJimms-CJYxt095rJ9YagZSQg88,2872
-ngio/ome_zarr_meta/ngio_specs/_ngio_hcs.py,sha256=_KM9Ql-sBL1zV_OLhDiFBj9QhEjwVcW8W5sMUA7xtzM,16944
+ngio/ome_zarr_meta/ngio_specs/_ngio_hcs.py,sha256=-YOC39YXDk5ojFkpvj8Vup6A3tAtHotV9e8QNZ0l_Cs,16999
 ngio/ome_zarr_meta/ngio_specs/_ngio_image.py,sha256=g32ytm4jxDR5duHyO6_kU0MrcE2NzI8V4EWCYanuIrI,14591
 ngio/ome_zarr_meta/ngio_specs/_pixel_size.py,sha256=4VF1djY9T5tp6GCJXppFrUJwALI1XgIm0imoM5rNvdE,3876
 ngio/ome_zarr_meta/v04/__init__.py,sha256=tRt3zGelL948EoLfy_gW-LKvJcBbSkbT9kwIgU0hQV8,721
@@ -58,7 +58,7 @@ ngio/resources/20200812-CardiomyocyteDifferentiation14-Cycle1_B03/nuclei.png,sha
 ngio/resources/20200812-CardiomyocyteDifferentiation14-Cycle1_B03/raw.jpg,sha256=82lejQAIokj5w9g-qqhysDTWpHtNvJTkdURG_BjqIxQ,37743
 ngio/tables/__init__.py,sha256=_BV3sclNMLITu_J8_3DkkUrCB6Kro0HzeWLDCD1ivKM,877
 ngio/tables/_abstract_table.py,sha256=rwGa47TzbFmosucBWVfFq6JEXtgGvOdUVtU9DIelV88,8204
-ngio/tables/_tables_container.py,sha256=DV_uX_bf3kCcmWLFKjY9FhKX8iBewbHkZSECqKjsCIw,12333
+ngio/tables/_tables_container.py,sha256=1HXIfofOtwJr6XQ_ILM8-rr7Cxq1XmV4BzL5Q2g2tLk,13097
 ngio/tables/backends/__init__.py,sha256=MwSRXNF1rWQBFOTDA_vT3oGoNZpviVgytsL5Txnu08I,1619
 ngio/tables/backends/_abstract_backend.py,sha256=M1ogsBpWBiQMV65YweZhA845PAtkzG2BsZCPN_7Xp8U,7613
 ngio/tables/backends/_anndata.py,sha256=T67N-SPNO4eqe7-VGAUfgtwaSy_o2DqCvZgE2yRH5jE,4582
@@ -76,13 +76,13 @@ ngio/tables/v1/_generic_table.py,sha256=1ktJHeuv7U1g5Z8PFUuTkCjOzcYMQd8xegKHKUed
 ngio/tables/v1/_roi_table.py,sha256=DuKJlDmtQtLOfL0g4CSdncfm4hBsKWG6F6fkMUpt4Nk,17821
 ngio/transforms/__init__.py,sha256=JA0-Ui7skbXkm9ofN-AEhU1FTLutkMkwTdVD-310frQ,113
 ngio/transforms/_zoom.py,sha256=otyE-vxFnywUJ8U4mHjat-bNG_7_jv62ckTpqDMxyVQ,550
-ngio/utils/__init__.py,sha256=1eIInpFEEWQtMeGaRhAyVjqSKWUCuksMkx2cqg9D9nI,987
+ngio/utils/__init__.py,sha256=d2OHQGMFPpf8-_ipuqquxtqCNGJpX5yXt34A65nScUU,1037
 ngio/utils/_cache.py,sha256=Ey9fgc_BTdMyqg6c80C0CuGDhOafln8-3e_1MQ0MFzw,1283
 ngio/utils/_datasets.py,sha256=6GtxfPkjutNaeg5BHuJDBP0GudvQXHLU6mmHp_o0bGA,5650
 ngio/utils/_errors.py,sha256=pKQ12LUjQLYE1nUawemA5h7HsgznjaSvV1n2PQU33N0,759
 ngio/utils/_fractal_fsspec_store.py,sha256=RdcCFOgHexRKX9zZvJV5RI-5OPc7VOPS6q_IeRxm24I,1548
-ngio/utils/_zarr_utils.py,sha256=nvSsdKDS9EGVFdk2mZl4TO1aSPVPbz5z3UzSLkkgw5o,17914
-ngio-0.5.0b1.dist-info/METADATA,sha256=_OgT6FBzjh1aFFXqlbPRXNivN8nMQC9boocEPIZ8vRs,6294
-ngio-0.5.0b1.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
-ngio-0.5.0b1.dist-info/licenses/LICENSE,sha256=UgN_a1QCeNh9rZWfz-wORQFxE3elQzLWPQaoK6N6fxQ,1502
-ngio-0.5.0b1.dist-info/RECORD,,
+ngio/utils/_zarr_utils.py,sha256=MVbW-a0S3iuzMaknqkliJa_lp8i6mEO4Q2YN2XxmeDw,18158
+ngio-0.5.0b2.dist-info/METADATA,sha256=r1un40xipjI7Kctjt0Gj9-B28PjO5pBSPWxOyoQjXCc,6294
+ngio-0.5.0b2.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
+ngio-0.5.0b2.dist-info/licenses/LICENSE,sha256=UgN_a1QCeNh9rZWfz-wORQFxE3elQzLWPQaoK6N6fxQ,1502
+ngio-0.5.0b2.dist-info/RECORD,,