ngio 0.4.0b1__py3-none-any.whl → 0.4.1__py3-none-any.whl

ngio/io_pipes/_zoom_transform.py

@@ -60,7 +60,12 @@ class BaseZoomTransform:
         target_shape = []
         for shape, ax_name in zip(array_shape, axes_ops.output_axes, strict=True):
             ax_type = self._input_dimensions.axes_handler.get_axis(ax_name)
-            if ax_type is not None and ax_type.axis_type == "channel":
+            if ax_type is None:
+                # Unknown axis can only be a virtual axis
+                # So we set it to 1
+                target_shape.append(1)
+                continue
+            elif ax_type.axis_type == "channel":
                 # Do not scale channel axis
                 target_shape.append(shape)
                 continue

{ngio-0.4.0b1.dist-info → ngio-0.4.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: ngio
-Version: 0.4.0b1
+Version: 0.4.1
 Summary: Next Generation file format IO
 Project-URL: homepage, https://github.com/BioVisionCenter/ngio
 Project-URL: repository, https://github.com/BioVisionCenter/ngio
@@ -28,7 +28,6 @@ Requires-Dist: pooch
 Requires-Dist: pyarrow
 Requires-Dist: pydantic
 Requires-Dist: requests
-Requires-Dist: xarray
 Requires-Dist: zarr<3
 Provides-Extra: dev
 Requires-Dist: devtools; extra == 'dev'
@@ -83,20 +82,22 @@ Ngio's mission is to streamline working with OME-Zarr files by providing a simpl
 
 ## Key Features
 
-### 📊 Simple Object-Based API
+### 🔍 Simple Object-Based API
 
 - Easily open, explore, and manipulate OME-Zarr images and HCS plates
 - Create and derive new images and labels with minimal boilerplate code
 
-### 🔍 Rich Tables and Regions of Interest (ROI) Support
+### 📊 Rich Tables and Regions of Interest (ROI) Support
 
+- Tight integration with [tabular data](https://biovisioncenter.github.io/ngio/stable/table_specs/overview/)
 - Extract and analyze specific regions of interest
-- Tight integration with [Tabular Data](https://BioVisionCenter.github.io/ngio/stable/table_specs/overview/)
+- Store measurements and other metadata in the OME-Zarr container
+- Extensible & modular allowing users to define custom table schemas and on disk serialization
 
-### 🔄 Scalable Data Processing (Coming Soon)
+### 🔄 Scalable Data Processing
 
-- Powerful iterators for processing data at scale
-- Efficient memory management for large datasets
+- Powerful iterators for building scalable and generalizable image processing pipelines
+- Extensible mapping mechanism for custom parallelization strategies
 
 ## Installation
 
@@ -114,23 +115,22 @@ Currently, ngio only supports OME-Zarr v0.4. Support for version 0.5 and higher
 
 ## Development Status
 
-!!! warning
-    Ngio is under active development and is not yet stable. The API is subject to change, and bugs and breaking changes are expected.
-    We follow [Semantic Versioning](https://semver.org/). Which means for 0.x releases potentially breaking changes can be introduced in minor releases.
+Ngio is under active development and is not yet stable. The API is subject to change, and bugs and breaking changes are expected.
+We follow [Semantic Versioning](https://semver.org/). Which means for 0.x releases potentially breaking changes can be introduced in minor releases.
 
 ### Available Features
 
 - ✅ OME-Zarr metadata handling and validation
 - ✅ Image and label access across pyramid levels
 - ✅ ROI and table support
+- ✅ Image processing iterators
 - ✅ Streaming from remote sources
 - ✅ Documentation and examples
 
 ### Upcoming Features
 
-- Advanced image processing iterators
-- Parallel processing capabilities
-- Support for OME-Zarr v0.5 and Zarr v3
+- Support for OME-Zarr v0.5 and Zarr v3 (via `zarr-python` v3)
+- Enhanced performance optimizations (parallel iterators, optimized io strategies)
 
 ## Contributors
 

{ngio-0.4.0b1.dist-info → ngio-0.4.1.dist-info}/RECORD

@@ -35,7 +35,7 @@ ngio/io_pipes/_ops_axes.py,sha256=Geg4ZXxB0njWWopX9YeiwRJJ9Ef2GKfG0NIUafOmi2c,10
 ngio/io_pipes/_ops_slices.py,sha256=7wBXucmIOW0a1r9MzEVevPOEefyhS27-yhaF8aeyD6Y,15804
 ngio/io_pipes/_ops_slices_utils.py,sha256=mKbAEccwsQjg6XyyJ5Ph5Xr9z6pUUCO3tZ4Yal-wYMs,6590
 ngio/io_pipes/_ops_transforms.py,sha256=uITs6v6sZ7DQ_Hpw3JdX8MuPOzir-bihvGzY84Qn4wY,2934
-ngio/io_pipes/_zoom_transform.py,sha256=bUeFTeGUbz3Io4uArqyHXkvLZmuKsOri1lvMhDXWchA,6716
+ngio/io_pipes/_zoom_transform.py,sha256=WBY1tO6_Qhf8FaDujfTdipuuqFf7PSi204wx5VKKs88,6884
 ngio/ome_zarr_meta/__init__.py,sha256=tzxW2oVhfeMBVuv3XkcbOLzMnbDvUnie-AVsvSxRkdE,1265
 ngio/ome_zarr_meta/_meta_handlers.py,sha256=ctknNDT8jxwyvxQf9on5gW31H1tRRsnneO38GT2UXoE,25880
 ngio/ome_zarr_meta/ngio_specs/__init__.py,sha256=U2FqZR91Ob2N6CqKdyw-_Ll-wMgmGuPZGVRCr6wuRFY,1698
@@ -79,7 +79,7 @@ ngio/utils/_errors.py,sha256=pKQ12LUjQLYE1nUawemA5h7HsgznjaSvV1n2PQU33N0,759
 ngio/utils/_fractal_fsspec_store.py,sha256=RdcCFOgHexRKX9zZvJV5RI-5OPc7VOPS6q_IeRxm24I,1548
 ngio/utils/_logger.py,sha256=N5W0a_xwze4blS1MolidBkTMbjTbg8GPguJZNun3mAE,1392
 ngio/utils/_zarr_utils.py,sha256=GUOcAx02IcfrJ5tIdKu8ChtRUUaBbkkddW5jaCCYnS8,13797
-ngio-0.4.0b1.dist-info/METADATA,sha256=cL8YlW3QecX9Stge_sYlDGi5WAIKIMjoDCvICoqmDFw,5868
-ngio-0.4.0b1.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
-ngio-0.4.0b1.dist-info/licenses/LICENSE,sha256=UgN_a1QCeNh9rZWfz-wORQFxE3elQzLWPQaoK6N6fxQ,1502
-ngio-0.4.0b1.dist-info/RECORD,,
+ngio-0.4.1.dist-info/METADATA,sha256=nx7nG1l_Q24dbiLVCerWU4FYdJr19UQfBW6QGR0Bm2M,6095
+ngio-0.4.1.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
+ngio-0.4.1.dist-info/licenses/LICENSE,sha256=UgN_a1QCeNh9rZWfz-wORQFxE3elQzLWPQaoK6N6fxQ,1502
+ngio-0.4.1.dist-info/RECORD,,