ngio 0.4.0a3__py3-none-any.whl → 0.4.0b1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (54) hide show
  1. ngio/__init__.py +1 -2
  2. ngio/common/__init__.py +2 -51
  3. ngio/common/_dimensions.py +253 -74
  4. ngio/common/_pyramid.py +42 -23
  5. ngio/common/_roi.py +49 -413
  6. ngio/common/_zoom.py +32 -7
  7. ngio/experimental/iterators/__init__.py +0 -2
  8. ngio/experimental/iterators/_abstract_iterator.py +246 -26
  9. ngio/experimental/iterators/_feature.py +90 -52
  10. ngio/experimental/iterators/_image_processing.py +24 -63
  11. ngio/experimental/iterators/_mappers.py +48 -0
  12. ngio/experimental/iterators/_rois_utils.py +4 -4
  13. ngio/experimental/iterators/_segmentation.py +38 -85
  14. ngio/images/_abstract_image.py +192 -95
  15. ngio/images/_create.py +16 -0
  16. ngio/images/_create_synt_container.py +10 -0
  17. ngio/images/_image.py +35 -9
  18. ngio/images/_label.py +26 -3
  19. ngio/images/_masked_image.py +45 -61
  20. ngio/images/_ome_zarr_container.py +33 -0
  21. ngio/io_pipes/__init__.py +75 -0
  22. ngio/io_pipes/_io_pipes.py +361 -0
  23. ngio/io_pipes/_io_pipes_masked.py +488 -0
  24. ngio/io_pipes/_io_pipes_roi.py +152 -0
  25. ngio/io_pipes/_io_pipes_types.py +56 -0
  26. ngio/io_pipes/_match_shape.py +376 -0
  27. ngio/io_pipes/_ops_axes.py +344 -0
  28. ngio/io_pipes/_ops_slices.py +446 -0
  29. ngio/io_pipes/_ops_slices_utils.py +196 -0
  30. ngio/io_pipes/_ops_transforms.py +104 -0
  31. ngio/io_pipes/_zoom_transform.py +175 -0
  32. ngio/ome_zarr_meta/__init__.py +4 -2
  33. ngio/ome_zarr_meta/ngio_specs/__init__.py +4 -4
  34. ngio/ome_zarr_meta/ngio_specs/_axes.py +129 -141
  35. ngio/ome_zarr_meta/ngio_specs/_dataset.py +47 -121
  36. ngio/ome_zarr_meta/ngio_specs/_ngio_image.py +30 -22
  37. ngio/ome_zarr_meta/ngio_specs/_pixel_size.py +17 -1
  38. ngio/ome_zarr_meta/v04/_v04_spec_utils.py +33 -30
  39. ngio/resources/20200812-CardiomyocyteDifferentiation14-Cycle1_B03/nuclei.png +0 -0
  40. ngio/resources/__init__.py +1 -0
  41. ngio/resources/resource_model.py +1 -0
  42. ngio/{common/transforms → transforms}/__init__.py +1 -1
  43. ngio/transforms/_zoom.py +19 -0
  44. ngio/utils/_datasets.py +5 -0
  45. ngio/utils/_zarr_utils.py +5 -1
  46. {ngio-0.4.0a3.dist-info → ngio-0.4.0b1.dist-info}/METADATA +1 -1
  47. ngio-0.4.0b1.dist-info/RECORD +85 -0
  48. ngio/common/_array_io_pipes.py +0 -554
  49. ngio/common/_array_io_utils.py +0 -508
  50. ngio/common/transforms/_label.py +0 -12
  51. ngio/common/transforms/_zoom.py +0 -109
  52. ngio-0.4.0a3.dist-info/RECORD +0 -76
  53. {ngio-0.4.0a3.dist-info → ngio-0.4.0b1.dist-info}/WHEEL +0 -0
  54. {ngio-0.4.0a3.dist-info → ngio-0.4.0b1.dist-info}/licenses/LICENSE +0 -0
ngio-0.4.0a3.dist-info/RECORD DELETED
@@ -1,76 +0,0 @@
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- ngio/__init__.py,sha256=clqwRwmkalSwXvmNLGwtI-385gwvBTnJjohEk3Xp5cE,1463
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- ngio/common/__init__.py,sha256=t5FUH7kSTqTT1jHmL_qYiEUCHHwMEKNfcZ6EbrkcpNg,1958
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- ngio/common/_array_io_pipes.py,sha256=zxZIVRtPjWUQ8J09_s5RcwoTgCOHDGmYYrkdPQbOPlM,18221
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- ngio/common/_array_io_utils.py,sha256=LktLM2_2LkjYkwzyJXHZ0LyuwrQN4GYTqgpByBxNmlg,16303
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- ngio/common/_dimensions.py,sha256=ubBSmnQmZOmen1jUn3LWZlNXCjUuV9FTjZWzUYidOwk,4852
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- ngio/common/_masking_roi.py,sha256=ZZTXordEZoq_ADk0OzADvq-5dPOwUBSuNobzFR8fpTw,5697
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- ngio/common/_pyramid.py,sha256=ElY_nBcchN3eeD9obLZ31IIo42HVlDn8R-legQpNxzQ,7503
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- ngio/common/_roi.py,sha256=x5HHudELvYjOmoLJulk2cNrgfOZ0o1Q1OFtldZAKIKU,22360
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- ngio/common/_synt_images_utils.py,sha256=B6uYOW1NyrM06YMR-csca3_YnAAkPRTbvnbLdy9tk9E,3188
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- ngio/common/_zoom.py,sha256=p_trkLLrNM6hYvchJQJOHfYpzSlzzdDJmcyTx6K5J1M,6030
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- ngio/common/transforms/__init__.py,sha256=Dn8SpMw_e_bg9kx4ZVPrGHJIu_yOK1FkIlePlN_C7FQ,120
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- ngio/common/transforms/_label.py,sha256=_bTK_E0BCWTno-qg3cf4voAB8OLJuEZ-4l0YgEXgl44,424
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- ngio/common/transforms/_zoom.py,sha256=mbnPnJZsCCms5x1Tq2akvsRDbsDYomiNRGqiF6KY2nI,3751
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- ngio/experimental/__init__.py,sha256=3pmBtHi-i8bKjTsvrOJM56ZyRX3Pv_dceCdt88-8COQ,147
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- ngio/experimental/iterators/__init__.py,sha256=on_sUvuRhHBb7-r5u3Ojvu6K9FGjUOrWGUkLQ4aRzbs,556
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- ngio/experimental/iterators/_abstract_iterator.py,sha256=p8ZxQuoqPGLZCp79FprhgV-QsN5uuqadffoXnEqSdys,5533
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- ngio/experimental/iterators/_feature.py,sha256=5MI0hgcR2lFUQLI4RpVCL2SDJNhmunW33tIUQhPWl_s,5996
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- ngio/experimental/iterators/_image_processing.py,sha256=fkD8PDm-3RaKpsRIRzvkeEkvDJ-fzcSWqrMXI3DBM4w,6648
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- ngio/experimental/iterators/_rois_utils.py,sha256=yFIlUAsSuh9ArUakJv7kTIiO2yG5r7kuDw-ljmtHj5Y,4359
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- ngio/experimental/iterators/_segmentation.py,sha256=NMzHcny2aUCRiSa9dROQ0kMzllYqIEwMh-fUmekw7dY,11229
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- ngio/hcs/__init__.py,sha256=G8j9vD-liLeB_UeGtKYIgshWvJnUA6ks9GwjvWBLdHs,357
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- ngio/hcs/_plate.py,sha256=qfRwbCKaoz_AWTi8RDFFwOxy5geSknfJrPcqFVno9zI,44288
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- ngio/images/__init__.py,sha256=9Whvt7GTiCgT_vXaEEqGnDaY1-UsRk3dhLTv091F_g4,1211
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- ngio/images/_abstract_image.py,sha256=DfKz2xjB4QKMTYn8K9YorQSiPyzcwe9QCDtzzgsCnHE,15615
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- ngio/images/_create.py,sha256=X0EalQgrcdh_RVgSxIkv0YNQydKXNRpCXHlgn1oVpI0,9445
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- ngio/images/_create_synt_container.py,sha256=XjsQjBEnEGiqrfyKBdp_h4dJmScBMpMg1yUEqObo7Nw,5004
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- ngio/images/_image.py,sha256=4PwHsD0KiiJwcyuVX4-iuLCv6V05N6JlCDlEggyLJkw,31742
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- ngio/images/_label.py,sha256=rv6-oigkpa5mUTdogdPhfC3JYkEbdjXxY6Y6f1oD-RI,10603
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- ngio/images/_masked_image.py,sha256=oFApCcPejfapzilh3ecO2NmI_FReU1FJPc-8XJqsYYU,19619
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- ngio/images/_ome_zarr_container.py,sha256=WvvqH73pQkIIyiJTM6Fyzz6wjLs57V3hdEM7YBWzpOo,36712
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- ngio/images/_table_ops.py,sha256=jFv_AMqoB4JBpoWsMtZppZVW7dAOC_u-JpfNm8b33kY,15292
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- ngio/ome_zarr_meta/__init__.py,sha256=oZ8PEsWM7U0KwzpsnvVfX9k4UfuTz5sZ8B6B9eY5hyY,1193
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- ngio/ome_zarr_meta/_meta_handlers.py,sha256=ctknNDT8jxwyvxQf9on5gW31H1tRRsnneO38GT2UXoE,25880
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- ngio/ome_zarr_meta/ngio_specs/__init__.py,sha256=9mYKQ-1LqIa20dN_cuUuUf_w-V39Y0HdeB8UKqSrpfQ,1660
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- ngio/ome_zarr_meta/ngio_specs/_axes.py,sha256=S10x-8yObaGD6HEirkfMjrVGWnIHlDd52_RdYBTfjY0,17498
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- ngio/ome_zarr_meta/ngio_specs/_channels.py,sha256=CVsbG52U31TaMdTj8XqvClUdBya2Ar3qBjDo_xhP-NM,16967
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- ngio/ome_zarr_meta/ngio_specs/_dataset.py,sha256=bYbqBneOmASGiV_D1sgng3odtbo0ICWdqDs7au99PSU,5844
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- ngio/ome_zarr_meta/ngio_specs/_ngio_hcs.py,sha256=N1CGPOubwf0pvm8tiTnh-C1cOu9lToyDe3WagnEnPN4,17207
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- ngio/ome_zarr_meta/ngio_specs/_ngio_image.py,sha256=Q4bJjU_53-Lw2qrVaw07PKwjaHLmHZy7JIwM8dkqFeg,15689
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- ngio/ome_zarr_meta/ngio_specs/_pixel_size.py,sha256=5TT8250XdCKUnk3OwZeyXIMNFKOg_jx4NnoCo9RLsXI,4079
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- ngio/ome_zarr_meta/v04/__init__.py,sha256=dJRzzxyYc81kf-0Hip_bqvbdManaM8XTdQX2meWyCSs,583
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- ngio/ome_zarr_meta/v04/_custom_models.py,sha256=5GxiDERvLuvq4QvApcA6EiKLS6hLFX1R0R_9rSaa85A,530
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- ngio/ome_zarr_meta/v04/_v04_spec_utils.py,sha256=YKBVVWb3mnuE-5L5k1i85WpHmcrbKl9k5KU2jNqt5yg,15868
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- ngio/resources/__init__.py,sha256=Hry2odzDaC471_qgVfAQVnWDMK0Io9F8m9_JBNNm4e0,1633
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- ngio/resources/resource_model.py,sha256=0Egs0QAJ5PNknqECHuBd_-ZTdi8EDNirt5VyuPdbg30,835
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- ngio/resources/20200812-CardiomyocyteDifferentiation14-Cycle1_B03/mask.png,sha256=g3QmxQdmeciAtBe5cTCRfR6yw3keG9cBYfjizMo6EGo,11890
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- ngio/resources/20200812-CardiomyocyteDifferentiation14-Cycle1_B03/nuclei.png,sha256=QhZ4XiFX7r-8-fbX8wSeUymktX85Ap3Nw1MqeOfRrF8,21649
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- ngio/resources/20200812-CardiomyocyteDifferentiation14-Cycle1_B03/raw.jpg,sha256=82lejQAIokj5w9g-qqhysDTWpHtNvJTkdURG_BjqIxQ,37743
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- ngio/tables/__init__.py,sha256=_BV3sclNMLITu_J8_3DkkUrCB6Kro0HzeWLDCD1ivKM,877
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- ngio/tables/_abstract_table.py,sha256=rwGa47TzbFmosucBWVfFq6JEXtgGvOdUVtU9DIelV88,8204
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- ngio/tables/_tables_container.py,sha256=3xmpREaN671l40MPprnl1BD-VoOb6xfjECb5mNoMW0w,12173
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- ngio/tables/backends/__init__.py,sha256=MwSRXNF1rWQBFOTDA_vT3oGoNZpviVgytsL5Txnu08I,1619
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- ngio/tables/backends/_abstract_backend.py,sha256=54Vh9yPfLx1NixGVfFkW4msD51nsim0zIfHRnO80Xt8,7276
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- ngio/tables/backends/_anndata.py,sha256=97RWG4Hjc42JBxm-YxjHEU8HHd14NiayelKlI1PTsCo,2868
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- ngio/tables/backends/_anndata_utils.py,sha256=HsmP27fm7JW1kjahl4lUnnViK_iqmu2bnsu86z43U98,3116
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- ngio/tables/backends/_csv.py,sha256=Ev61D-AUKo4LIhXRmWPJgYbHI7eQdxiajQR574DevEM,932
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- ngio/tables/backends/_json.py,sha256=1ZsEuXDJm1rOZV_KjFm8CB0qhv7L1W7L2EGWPf4q_p0,3137
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- ngio/tables/backends/_non_zarr_backends.py,sha256=BybUl800pqCdqJJmsGnUi4jsH1ibpQSUl0ZnumkFDwY,7298
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- ngio/tables/backends/_parquet.py,sha256=ic-p86h8lce8q9luBJGRzy6vxlWyJvA0-2l5cUD6OqY,1398
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- ngio/tables/backends/_table_backends.py,sha256=ksP2NAosXZkNMZf-IMrLx7bjQgp_eKfvPYK4vMdT1A8,7250
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- ngio/tables/backends/_utils.py,sha256=YFB7u2_l8lLAK_jrmlSfzH-2sOAFaDP1bmeUfuNo7YM,19719
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- ngio/tables/v1/__init__.py,sha256=Wr1_9RZFpaN8FYMTnxT9Yjkw4AS7y9FMWailmB_uj5g,617
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- ngio/tables/v1/_condition_table.py,sha256=T0Uq5BKkmMoEspt_Rx0U99Ow6S9GAMZDHqvUO5obCAM,1780
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- ngio/tables/v1/_feature_table.py,sha256=n9uMHwoBh-_dlOhUXCFbmAjXFVXncNCR3SjE2qzXI68,3821
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- ngio/tables/v1/_generic_table.py,sha256=1ktJHeuv7U1g5Z8PFUuTkCjOzcYMQd8xegKHKUedJB8,1240
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- ngio/tables/v1/_roi_table.py,sha256=g7UpMmpf3uAfaG59WYRnimUBgiB_T1qUJRwMZpMt9cI,17099
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- ngio/utils/__init__.py,sha256=XPYh8ehC7uXNU2cFFXZAw-S3DpWpX1Yq2xGkffZv5vI,1142
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- ngio/utils/_datasets.py,sha256=2g-Neg78dNcqyDz39QQw-Ifp9GITHjVHisdqgvvDNDE,5475
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- ngio/utils/_errors.py,sha256=pKQ12LUjQLYE1nUawemA5h7HsgznjaSvV1n2PQU33N0,759
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- ngio/utils/_fractal_fsspec_store.py,sha256=RdcCFOgHexRKX9zZvJV5RI-5OPc7VOPS6q_IeRxm24I,1548
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- ngio/utils/_logger.py,sha256=N5W0a_xwze4blS1MolidBkTMbjTbg8GPguJZNun3mAE,1392
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- ngio/utils/_zarr_utils.py,sha256=aYHhjHWGy5Jx7IkPb4nt9N0-HgyvJnyvK9GGqnccZkE,13606
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- ngio-0.4.0a3.dist-info/METADATA,sha256=PrG0TduDw2_iog0OKt2wF_gse3DW0oshBq158P6BS34,5868
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- ngio-0.4.0a3.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
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- ngio-0.4.0a3.dist-info/licenses/LICENSE,sha256=UgN_a1QCeNh9rZWfz-wORQFxE3elQzLWPQaoK6N6fxQ,1502
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- ngio-0.4.0a3.dist-info/RECORD,,
{ngio-0.4.0a3.dist-info → ngio-0.4.0b1.dist-info}/WHEEL RENAMED
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