ngio 0.3.5__py3-none-any.whl → 0.4.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (73) hide show
  1. ngio/__init__.py +7 -2
  2. ngio/common/__init__.py +5 -52
  3. ngio/common/_dimensions.py +270 -55
  4. ngio/common/_masking_roi.py +38 -10
  5. ngio/common/_pyramid.py +51 -30
  6. ngio/common/_roi.py +269 -82
  7. ngio/common/_synt_images_utils.py +101 -0
  8. ngio/common/_zoom.py +49 -19
  9. ngio/experimental/__init__.py +5 -0
  10. ngio/experimental/iterators/__init__.py +15 -0
  11. ngio/experimental/iterators/_abstract_iterator.py +390 -0
  12. ngio/experimental/iterators/_feature.py +189 -0
  13. ngio/experimental/iterators/_image_processing.py +130 -0
  14. ngio/experimental/iterators/_mappers.py +48 -0
  15. ngio/experimental/iterators/_rois_utils.py +127 -0
  16. ngio/experimental/iterators/_segmentation.py +235 -0
  17. ngio/hcs/_plate.py +41 -36
  18. ngio/images/__init__.py +22 -1
  19. ngio/images/_abstract_image.py +403 -176
  20. ngio/images/_create.py +31 -15
  21. ngio/images/_create_synt_container.py +138 -0
  22. ngio/images/_image.py +452 -63
  23. ngio/images/_label.py +56 -30
  24. ngio/images/_masked_image.py +387 -129
  25. ngio/images/_ome_zarr_container.py +237 -67
  26. ngio/{common → images}/_table_ops.py +41 -41
  27. ngio/io_pipes/__init__.py +75 -0
  28. ngio/io_pipes/_io_pipes.py +361 -0
  29. ngio/io_pipes/_io_pipes_masked.py +488 -0
  30. ngio/io_pipes/_io_pipes_roi.py +152 -0
  31. ngio/io_pipes/_io_pipes_types.py +56 -0
  32. ngio/io_pipes/_match_shape.py +376 -0
  33. ngio/io_pipes/_ops_axes.py +344 -0
  34. ngio/io_pipes/_ops_slices.py +446 -0
  35. ngio/io_pipes/_ops_slices_utils.py +196 -0
  36. ngio/io_pipes/_ops_transforms.py +104 -0
  37. ngio/io_pipes/_zoom_transform.py +175 -0
  38. ngio/ome_zarr_meta/__init__.py +4 -2
  39. ngio/ome_zarr_meta/ngio_specs/__init__.py +4 -10
  40. ngio/ome_zarr_meta/ngio_specs/_axes.py +186 -175
  41. ngio/ome_zarr_meta/ngio_specs/_channels.py +55 -18
  42. ngio/ome_zarr_meta/ngio_specs/_dataset.py +48 -122
  43. ngio/ome_zarr_meta/ngio_specs/_ngio_hcs.py +3 -3
  44. ngio/ome_zarr_meta/ngio_specs/_ngio_image.py +38 -87
  45. ngio/ome_zarr_meta/ngio_specs/_pixel_size.py +17 -1
  46. ngio/ome_zarr_meta/v04/_v04_spec_utils.py +34 -31
  47. ngio/resources/20200812-CardiomyocyteDifferentiation14-Cycle1_B03/mask.png +0 -0
  48. ngio/resources/20200812-CardiomyocyteDifferentiation14-Cycle1_B03/nuclei.png +0 -0
  49. ngio/resources/20200812-CardiomyocyteDifferentiation14-Cycle1_B03/raw.jpg +0 -0
  50. ngio/resources/__init__.py +55 -0
  51. ngio/resources/resource_model.py +36 -0
  52. ngio/tables/backends/_abstract_backend.py +5 -6
  53. ngio/tables/backends/_anndata.py +1 -1
  54. ngio/tables/backends/_anndata_utils.py +3 -3
  55. ngio/tables/backends/_non_zarr_backends.py +1 -1
  56. ngio/tables/backends/_table_backends.py +0 -1
  57. ngio/tables/backends/_utils.py +3 -3
  58. ngio/tables/v1/_roi_table.py +165 -70
  59. ngio/transforms/__init__.py +5 -0
  60. ngio/transforms/_zoom.py +19 -0
  61. ngio/utils/__init__.py +2 -3
  62. ngio/utils/_datasets.py +5 -0
  63. ngio/utils/_logger.py +19 -0
  64. ngio/utils/_zarr_utils.py +6 -6
  65. {ngio-0.3.5.dist-info → ngio-0.4.0.dist-info}/METADATA +16 -14
  66. ngio-0.4.0.dist-info/RECORD +85 -0
  67. ngio/common/_array_pipe.py +0 -288
  68. ngio/common/_axes_transforms.py +0 -64
  69. ngio/common/_common_types.py +0 -5
  70. ngio/common/_slicer.py +0 -96
  71. ngio-0.3.5.dist-info/RECORD +0 -61
  72. {ngio-0.3.5.dist-info → ngio-0.4.0.dist-info}/WHEEL +0 -0
  73. {ngio-0.3.5.dist-info → ngio-0.4.0.dist-info}/licenses/LICENSE +0 -0
ngio-0.3.5.dist-info/RECORD DELETED
@@ -1,61 +0,0 @@
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- ngio/common/__init__.py,sha256=BttXCAV2ks6_oXVDfapk1Lvlxp4J0ffX7-FXR3LL1BM,1834
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- ngio/common/_masking_roi.py,sha256=-o6meGP17iTXEbkO9aGh1VX2drkc2laIcRJvCy_pRRM,4919
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- ngio/common/_table_ops.py,sha256=ToNR7F053l1dubVv-gvBD-523T10HnE2UzqeU2BuNy8,15494
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- ngio/common/_zoom.py,sha256=KsURa5VuixmpbAAY5-6obmuQV8vfiHKZqBxZDXvchpM,5473
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- ngio/hcs/__init__.py,sha256=G8j9vD-liLeB_UeGtKYIgshWvJnUA6ks9GwjvWBLdHs,357
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- ngio/hcs/_plate.py,sha256=o-Myg1sPUT9mCfYjHOuUTIpm2Nl0siacmuztGoPcYc0,44265
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- ngio/images/__init__.py,sha256=PlYvbHOMvZLDgn_PeGrytOEU3e_-AO8GWpRjEqoX_Gw,536
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- ngio/images/_abstract_image.py,sha256=8PNQPZjiDz-pcTFXSJAVw7nUr4yL_iRwqDEUTKkAnp0,10266
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- ngio/images/_create.py,sha256=XYn30m_2OSZeHHASYHc3eK9u_gZIYy9wo6mGdRGaq5c,9473
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- ngio/images/_image.py,sha256=B9MTk3Cei-FBR4jbhSujTSNcKM_ySape28yXR_JlY0A,17980
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- ngio/images/_label.py,sha256=Q1vPrXDcjJ7Gdd0wDz6NCVYQLNe1Ae6YDI4iK0oq31s,10557
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- ngio/images/_masked_image.py,sha256=sd6aQetNVwtDkwUvKX-lssQyHzt5m-CYZL8ZFkwDSn8,8533
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- ngio/images/_ome_zarr_container.py,sha256=CygzzFMYFT35ztLSPKe6iKLzCtgCnVWk8M9xOj6Tc5U,31221
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- ngio/ome_zarr_meta/__init__.py,sha256=oZ8PEsWM7U0KwzpsnvVfX9k4UfuTz5sZ8B6B9eY5hyY,1193
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- ngio/ome_zarr_meta/_meta_handlers.py,sha256=ctknNDT8jxwyvxQf9on5gW31H1tRRsnneO38GT2UXoE,25880
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- ngio/ome_zarr_meta/ngio_specs/__init__.py,sha256=05NQukZG0nNvjzf8AKWGu7PhjhQcImGSAOK3D3Bg-Js,1786
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- ngio/ome_zarr_meta/ngio_specs/_axes.py,sha256=tHtx6NfBgDcCgDk9CosjIjw1KZJ2qi0i_eoLgrdiEWw,16681
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- ngio/ome_zarr_meta/ngio_specs/_channels.py,sha256=Jwys1yYC8q6_gIaJ52KcKcTP7hzqVjBE-VlVQvJurCs,15394
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- ngio/ome_zarr_meta/ngio_specs/_dataset.py,sha256=hY8ogPPxvCgVg6k02t3zUr24lasYrvnxBd1iPEigdG4,5892
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- ngio/ome_zarr_meta/ngio_specs/_ngio_hcs.py,sha256=R8F7Wkhpo1YqG2gWWwGUJflILo6gsowJg8eVXYdMxdw,17146
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- ngio/ome_zarr_meta/ngio_specs/_ngio_image.py,sha256=8E38Mgw-l0Ff1nkmCJIzo64G_paAVhM8xktUS_V5egY,17960
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- ngio/ome_zarr_meta/ngio_specs/_pixel_size.py,sha256=5TT8250XdCKUnk3OwZeyXIMNFKOg_jx4NnoCo9RLsXI,4079
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- ngio/ome_zarr_meta/v04/__init__.py,sha256=dJRzzxyYc81kf-0Hip_bqvbdManaM8XTdQX2meWyCSs,583
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- ngio/ome_zarr_meta/v04/_custom_models.py,sha256=5GxiDERvLuvq4QvApcA6EiKLS6hLFX1R0R_9rSaa85A,530
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- ngio/ome_zarr_meta/v04/_v04_spec_utils.py,sha256=05tEr2eEP_XVIfBMOAWLT7lzJV4KS5eYrpK8l94tn3w,15876
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- ngio/tables/__init__.py,sha256=_BV3sclNMLITu_J8_3DkkUrCB6Kro0HzeWLDCD1ivKM,877
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- ngio/tables/_abstract_table.py,sha256=rwGa47TzbFmosucBWVfFq6JEXtgGvOdUVtU9DIelV88,8204
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- ngio/tables/_tables_container.py,sha256=3xmpREaN671l40MPprnl1BD-VoOb6xfjECb5mNoMW0w,12173
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- ngio/tables/backends/__init__.py,sha256=MwSRXNF1rWQBFOTDA_vT3oGoNZpviVgytsL5Txnu08I,1619
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- ngio/tables/backends/_anndata.py,sha256=0r6zOP9Nm9VVpKLB1-xZTId-e7VFJ6EGYhFSoAIylik,2831
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- ngio/tables/backends/_csv.py,sha256=Ev61D-AUKo4LIhXRmWPJgYbHI7eQdxiajQR574DevEM,932
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- ngio/tables/backends/_json.py,sha256=1ZsEuXDJm1rOZV_KjFm8CB0qhv7L1W7L2EGWPf4q_p0,3137
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- ngio/tables/backends/_non_zarr_backends.py,sha256=SvPPhT6n5TrKUOyV1mNcdHQK49huZ5lwR8EVe9MdydM,7254
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- ngio/tables/backends/_parquet.py,sha256=ic-p86h8lce8q9luBJGRzy6vxlWyJvA0-2l5cUD6OqY,1398
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- ngio/tables/backends/_table_backends.py,sha256=56lMLrkmRS8-NTwNF0wkMzrRwTmOFLk1g_LBDA2i6wg,7318
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- ngio/tables/backends/_utils.py,sha256=tJBSWN6OhO_1ybxl4vT2l3ImB028Fb6h0vaitPRcr8A,19668
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- ngio/tables/v1/__init__.py,sha256=Wr1_9RZFpaN8FYMTnxT9Yjkw4AS7y9FMWailmB_uj5g,617
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- ngio/tables/v1/_condition_table.py,sha256=T0Uq5BKkmMoEspt_Rx0U99Ow6S9GAMZDHqvUO5obCAM,1780
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- ngio/tables/v1/_generic_table.py,sha256=1ktJHeuv7U1g5Z8PFUuTkCjOzcYMQd8xegKHKUedJB8,1240
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- ngio/tables/v1/_roi_table.py,sha256=DgXhp-DHTeEJwzSsSRSlnPghjMhYGa3IGSpwTt5LKZU,13603
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- ngio/utils/__init__.py,sha256=VxPVDKF0QF9HtG8wY0J6PXESNcWLaMXQNZiw5dHflBU,1179
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- ngio/utils/_datasets.py,sha256=2g-Neg78dNcqyDz39QQw-Ifp9GITHjVHisdqgvvDNDE,5475
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- ngio/utils/_errors.py,sha256=pKQ12LUjQLYE1nUawemA5h7HsgznjaSvV1n2PQU33N0,759
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- ngio/utils/_fractal_fsspec_store.py,sha256=RdcCFOgHexRKX9zZvJV5RI-5OPc7VOPS6q_IeRxm24I,1548
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- ngio/utils/_logger.py,sha256=HIuqD_2ShfFGDswBddcouStbKfL0Vz_ah8cAIFGhbS8,888
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- ngio-0.3.5.dist-info/RECORD,,
{ngio-0.3.5.dist-info → ngio-0.4.0.dist-info}/WHEEL RENAMED
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