ngio 0.3.4__py3-none-any.whl → 0.4.0__py3-none-any.whl

ngio/common/_slicer.py

@@ -1,96 +0,0 @@
-from collections.abc import Iterable
-
-import dask.array as da
-import numpy as np
-import zarr
-
-from ngio.common._dimensions import Dimensions
-from ngio.ome_zarr_meta.ngio_specs import AxesTransformation
-from ngio.utils import NgioValueError
-
-
-def _validate_int(value: int, shape: int) -> int:
-    if not isinstance(value, int):
-        raise NgioValueError(f"Invalid value {value} of type {type(value)}")
-    if value < 0 or value >= shape:
-        raise NgioValueError(
-            f"Invalid value {value}. Index out of bounds for axis of shape {shape}"
-        )
-    return value
-
-
-def _validate_iter_of_ints(value: Iterable[int], shape: int) -> list[int]:
-    if not isinstance(value, list):
-        raise NgioValueError(f"Invalid value {value} of type {type(value)}")
-    value = [_validate_int(v, shape=shape) for v in value]
-    return value
-
-
-def _validate_slice(value: slice, shape: int) -> slice:
-    start = value.start if value.start is not None else 0
-    start = max(start, 0)
-    stop = value.stop if value.stop is not None else shape
-    return slice(start, stop)
-
-
-class SliceTransform(AxesTransformation):
-    slices: tuple[slice | tuple[int, ...], ...]
-
-
-def compute_and_slices(
-    *,
-    dimensions: Dimensions,
-    **slice_kwargs: slice | int | Iterable[int],
-) -> SliceTransform:
-    _slices = {}
-    axes_names = dimensions._axes_mapper.on_disk_axes_names
-    for axis_name, slice_ in slice_kwargs.items():
-        axis = dimensions._axes_mapper.get_axis(axis_name)
-        if axis is None:
-            raise NgioValueError(
-                f"Invalid axis {axis_name}. "
-                f"Not found on the on-disk axes {axes_names}. "
-                "If you want to get/set a singletorn value include "
-                "it in the axes_order parameter."
-            )
-
-        shape = dimensions.get(axis.on_disk_name)
-
-        if isinstance(slice_, int):
-            slice_ = _validate_int(slice_, shape)
-            slice_ = slice(slice_, slice_ + 1)
-
-        elif isinstance(slice_, Iterable):
-            slice_ = _validate_iter_of_ints(slice_, shape)
-            slice_ = tuple(slice_)
-
-        elif isinstance(slice_, slice):
-            slice_ = _validate_slice(slice_, shape)
-
-        elif not isinstance(slice_, slice):
-            raise NgioValueError(
-                f"Invalid slice definition {slice_} of type {type(slice_)}"
-            )
-        _slices[axis.on_disk_name] = slice_
-
-    slices = tuple(_slices.get(axis, slice(None)) for axis in axes_names)
-    return SliceTransform(slices=slices)
-
-
-def numpy_get_slice(array: zarr.Array, slices: SliceTransform) -> np.ndarray:
-    return array[slices.slices]
-
-
-def dask_get_slice(array: zarr.Array, slices: SliceTransform) -> da.Array:
-    da_array = da.from_zarr(array)
-    return da_array[slices.slices]
-
-
-def numpy_set_slice(
-    array: zarr.Array, patch: np.ndarray, slices: SliceTransform
-) -> None:
-    array[slices.slices] = patch
-
-
-def dask_set_slice(array: zarr.Array, patch: da.Array, slices: SliceTransform) -> None:
-    da.to_zarr(arr=patch, url=array, region=slices.slices)

ngio-0.3.4.dist-info/RECORD

@@ -1,61 +0,0 @@
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-ngio/common/__init__.py,sha256=BttXCAV2ks6_oXVDfapk1Lvlxp4J0ffX7-FXR3LL1BM,1834
-ngio/common/_array_pipe.py,sha256=mvBsOtNSow9S6bSPMJ0288gCqQFYffGnaTTLyuB2XHw,8641
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-ngio/common/_dimensions.py,sha256=UV2XulWaROb3Y2f4fv27ZkTIu-MoS53U26aDkrv-_lk,3900
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-ngio/common/_table_ops.py,sha256=ToNR7F053l1dubVv-gvBD-523T10HnE2UzqeU2BuNy8,15494
-ngio/common/_zoom.py,sha256=KsURa5VuixmpbAAY5-6obmuQV8vfiHKZqBxZDXvchpM,5473
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-ngio/tables/__init__.py,sha256=_BV3sclNMLITu_J8_3DkkUrCB6Kro0HzeWLDCD1ivKM,877
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-ngio-0.3.4.dist-info/licenses/LICENSE,sha256=UgN_a1QCeNh9rZWfz-wORQFxE3elQzLWPQaoK6N6fxQ,1502
-ngio-0.3.4.dist-info/RECORD,,