ngio 0.3.0a0__py3-none-any.whl → 0.3.0a1__py3-none-any.whl

ngio/hcs/plate.py

@@ -32,7 +32,7 @@ from ngio.tables import (
     MaskingRoiTable,
     RoiTable,
     Table,
-    TableBackendProtocol,
+    TableBackend,
     TablesContainer,
     TableType,
     TypedTable,
@@ -909,14 +909,14 @@ class OmeZarrPlate:
         self,
         name: str,
         table_cls: type[TableType],
-        backend: str | TableBackendProtocol | None = None,
+        backend: TableBackend | None = None,
     ) -> TableType:
         """Get a table from the image as a specific type.
 
         Args:
             name (str): The name of the table.
             table_cls (type[TableType]): The type of the table.
-            backend (str | TableBackendProtocol | None): The backend to use. If None,
+            backend (TableBackend | None): The backend to use. If None,
                 the default backend is used.
         """
         return self.tables_container.get_as(
@@ -929,7 +929,7 @@ class OmeZarrPlate:
         self,
         name: str,
         table: Table,
-        backend: str | TableBackendProtocol = "anndata_v1",
+        backend: TableBackend = "anndata",
         overwrite: bool = False,
     ) -> None:
         """Add a table to the image."""

ngio/images/ome_zarr_container.py

@@ -28,7 +28,7 @@ from ngio.tables import (
     MaskingRoiTable,
     RoiTable,
     Table,
-    TableBackendProtocol,
+    TableBackend,
     TablesContainer,
     TableType,
     TypedTable,
@@ -441,14 +441,14 @@ class OmeZarrContainer:
         self,
         name: str,
         table_cls: type[TableType],
-        backend: str | TableBackendProtocol | None = None,
+        backend: TableBackend | None = None,
     ) -> TableType:
         """Get a table from the image as a specific type.
 
         Args:
             name (str): The name of the table.
             table_cls (type[TableType]): The type of the table.
-            backend (str | TableBackendProtocol | None): The backend to use. If None,
+            backend (TableBackend | None): The backend to use. If None,
                 the default backend is used.
         """
         return self.tables_container.get_as(
@@ -469,7 +469,7 @@ class OmeZarrContainer:
         self,
         name: str,
         table: Table,
-        backend: str | TableBackendProtocol = "anndata_v1",
+        backend: TableBackend = "anndata",
         overwrite: bool = False,
     ) -> None:
         """Add a table to the image."""

ngio/ome_zarr_meta/_meta_handlers.py

@@ -187,10 +187,6 @@ class GenericMetaHandler(
 
         raise NgioValueError(f"Could not load metadata: {meta_or_error}")
 
-    def safe_load_meta(self) -> _image_meta | ConverterError:
-        """Load the metadata from the store."""
-        return self._load_meta(return_error=True)
-
     def _write_meta(self, meta) -> None:
         """Write the metadata to the store."""
         _meta = self._meta_exporter(metadata=meta)
@@ -217,6 +213,10 @@ class ImageMetaHandler(
             return meta
         raise NgioValueError(f"Could not load metadata: {meta}")
 
+    def safe_load_meta(self) -> NgioImageMeta | ConverterError:
+        """Load the metadata from the store."""
+        return self._load_meta(return_error=True)
+
 
 class LabelMetaHandler(
     GenericMetaHandler[NgioLabelMeta, LabelMetaImporter, LabelMetaExporter]
@@ -230,6 +230,10 @@ class LabelMetaHandler(
             return meta
         raise NgioValueError(f"Could not load metadata: {meta}")
 
+    def safe_load_meta(self) -> NgioLabelMeta | ConverterError:
+        """Load the metadata from the store."""
+        return self._load_meta(return_error=True)
+
 
 ###########################################################################
 #
@@ -267,10 +271,6 @@ class GenericHCSMetaHandler(Generic[_hcs_meta, _hcs_meta_importer, _hcs_meta_exp
 
         raise NgioValueError(f"Could not load metadata: {meta_or_error}")
 
-    def safe_load_meta(self) -> _hcs_meta | ConverterError:
-        """Load the metadata from the store."""
-        return self._load_meta(return_error=True)
-
     def _write_meta(self, meta) -> None:
         _meta = self._meta_exporter(metadata=meta)
         self._group_handler.write_attrs(_meta)
@@ -295,6 +295,10 @@ class WellMetaHandler(
             return meta
         raise NgioValueError(f"Could not load metadata: {meta}")
 
+    def safe_load_meta(self) -> NgioWellMeta | ConverterError:
+        """Load the metadata from the store."""
+        return self._load_meta(return_error=True)
+
 
 class PlateMetaHandler(
     GenericHCSMetaHandler[NgioPlateMeta, PlateMetaImporter, PlateMetaExporter]
@@ -308,6 +312,10 @@ class PlateMetaHandler(
             return meta
         raise NgioValueError(f"Could not load metadata: {meta}")
 
+    def safe_load_meta(self) -> NgioPlateMeta | ConverterError:
+        """Load the metadata from the store."""
+        return self._load_meta(return_error=True)
+
 
 ###########################################################################
 #

ngio/tables/__init__.py

@@ -1,6 +1,10 @@
 """Ngio Tables implementations."""
 
-from ngio.tables.backends import ImplementedTableBackends, TableBackendProtocol
+from ngio.tables.backends import (
+    ImplementedTableBackends,
+    TableBackend,
+    TableBackendProtocol,
+)
 from ngio.tables.tables_container import (
     ConditionTable,
     FeatureTable,
@@ -26,6 +30,7 @@ __all__ = [
     "MaskingRoiTable",
     "RoiTable",
     "Table",
+    "TableBackend",
     "TableBackendProtocol",
     "TableType",
     "TablesContainer",

ngio/tables/abstract_table.py

@@ -11,6 +11,7 @@ from anndata import AnnData
 from ngio.tables.backends import (
     BackendMeta,
     ImplementedTableBackends,
+    TableBackend,
     TableBackendProtocol,
     TabularData,
     convert_to_anndata,
@@ -146,7 +147,7 @@ class AbstractBaseTable(ABC):
     def _load_backend(
         meta: BackendMeta,
         handler: ZarrGroupHandler,
-        backend: str | TableBackendProtocol,
+        backend: TableBackend,
     ) -> TableBackendProtocol:
         """Create a new ROI table from a Zarr group handler."""
         if isinstance(backend, str):
@@ -202,7 +203,7 @@ class AbstractBaseTable(ABC):
     def set_backend(
         self,
         handler: ZarrGroupHandler | None = None,
-        backend: str | TableBackendProtocol = "anndata_v1",
+        backend: TableBackend = "anndata",
     ) -> None:
         """Set the backend of the table."""
         if handler is None:
@@ -226,7 +227,7 @@ class AbstractBaseTable(ABC):
         cls,
         handler: ZarrGroupHandler,
         meta_model: builtins.type[BackendMeta],
-        backend: str | TableBackendProtocol | None = None,
+        backend: TableBackend | None = None,
     ) -> Self:
         """Create a new ROI table from a Zarr group handler."""
         meta = meta_model(**handler.load_attrs())
@@ -241,7 +242,7 @@ class AbstractBaseTable(ABC):
     def from_handler(
         cls,
         handler: ZarrGroupHandler,
-        backend: str | TableBackendProtocol | None = None,
+        backend: TableBackend | None = None,
     ) -> Self:
         """Create a new ROI table from a Zarr group handler."""
         pass

ngio/tables/backends/__init__.py

@@ -1,12 +1,13 @@
 """Ngio Tables backend implementations."""
 
 from ngio.tables.backends._abstract_backend import AbstractTableBackend, BackendMeta
-from ngio.tables.backends._anndata_v1 import AnnDataBackend
-from ngio.tables.backends._csv_v1 import CsvTableBackend
-from ngio.tables.backends._json_v1 import JsonTableBackend
-from ngio.tables.backends._parquet_v1 import ParquetTableBackend
+from ngio.tables.backends._anndata import AnnDataBackend
+from ngio.tables.backends._csv import CsvTableBackend
+from ngio.tables.backends._json import JsonTableBackend
+from ngio.tables.backends._parquet import ParquetTableBackend
 from ngio.tables.backends._table_backends import (
     ImplementedTableBackends,
+    TableBackend,
     TableBackendProtocol,
 )
 from ngio.tables.backends._utils import (
@@ -34,6 +35,7 @@ __all__ = [
     "ImplementedTableBackends",
     "JsonTableBackend",
     "ParquetTableBackend",
+    "TableBackend",
     "TableBackendProtocol",
     "TabularData",
     "convert_anndata_to_pandas",

ngio/tables/backends/_abstract_backend.py

@@ -19,7 +19,7 @@ from ngio.utils import NgioValueError, ZarrGroupHandler
 class BackendMeta(BaseModel):
     """Metadata for the backend."""
 
-    backend: str = "anndata_v1"
+    backend: str = "anndata"
     index_key: str | None = None
     index_type: Literal["int", "str"] | None = None
 

ngio/tables/backends/{_anndata_v1.py → _anndata.py}

@@ -21,7 +21,7 @@ class AnnDataBackend(AbstractTableBackend):
     @staticmethod
     def backend_name() -> str:
         """Return the name of the backend."""
-        return "anndata_v1"
+        return "anndata"
 
     @staticmethod
     def implements_anndata() -> bool:

ngio/tables/backends/{_csv_v1.py → _csv.py}

@@ -1,7 +1,7 @@
 import pandas as pd
 import polars as pl
 
-from ngio.tables.backends._non_zarr_backends_v1 import NonZarrBaseBackend
+from ngio.tables.backends._non_zarr_backends import NonZarrBaseBackend
 
 
 def write_lf_to_csv(path: str, table: pl.DataFrame) -> None:
@@ -32,4 +32,4 @@ class CsvTableBackend(NonZarrBaseBackend):
     @staticmethod
     def backend_name() -> str:
         """Return the name of the backend."""
-        return "experimental_csv_v1"
+        return "csv"

ngio/tables/backends/{_json_v1.py → _json.py}

@@ -17,7 +17,7 @@ class JsonTableBackend(AbstractTableBackend):
     @staticmethod
     def backend_name() -> str:
         """Return the name of the backend."""
-        return "experimental_json_v1"
+        return "json"
 
     @staticmethod
     def implements_anndata() -> bool:

ngio/tables/backends/{_parquet_v1.py → _parquet.py}

@@ -1,7 +1,7 @@
 import pandas as pd
 import polars as pl
 
-from ngio.tables.backends._non_zarr_backends_v1 import NonZarrBaseBackend
+from ngio.tables.backends._non_zarr_backends import NonZarrBaseBackend
 
 
 def write_lf_to_parquet(path: str, table: pl.DataFrame) -> None:
@@ -44,4 +44,4 @@ class ParquetTableBackend(NonZarrBaseBackend):
     @staticmethod
     def backend_name() -> str:
         """Return the name of the backend."""
-        return "experimental_parquet_v1"
+        return "parquet"

ngio/tables/backends/_table_backends.py

@@ -7,10 +7,10 @@ from pandas import DataFrame
 from polars import DataFrame as PolarsDataFrame
 from polars import LazyFrame
 
-from ngio.tables.backends._anndata_v1 import AnnDataBackend
-from ngio.tables.backends._csv_v1 import CsvTableBackend
-from ngio.tables.backends._json_v1 import JsonTableBackend
-from ngio.tables.backends._parquet_v1 import ParquetTableBackend
+from ngio.tables.backends._anndata import AnnDataBackend
+from ngio.tables.backends._csv import CsvTableBackend
+from ngio.tables.backends._json import JsonTableBackend
+from ngio.tables.backends._parquet import ParquetTableBackend
 from ngio.tables.backends._utils import TabularData
 from ngio.utils import NgioValueError, ZarrGroupHandler
 
@@ -167,7 +167,7 @@ class ImplementedTableBackends:
         self,
         *,
         group_handler: ZarrGroupHandler,
-        backend_name: str = "anndata_v1",
+        backend_name: str = "anndata",
         index_key: str | None = None,
         index_type: Literal["int", "str"] | None = None,
     ) -> TableBackendProtocol:
@@ -199,3 +199,5 @@ ImplementedTableBackends().add_backend(AnnDataBackend)
 ImplementedTableBackends().add_backend(JsonTableBackend)
 ImplementedTableBackends().add_backend(CsvTableBackend)
 ImplementedTableBackends().add_backend(ParquetTableBackend)
+
+TableBackend = Literal["anndata", "json", "csv", "parquet"] | str | TableBackendProtocol

ngio/tables/tables_container.py

@@ -8,7 +8,7 @@ import polars as pl
 
 from ngio.tables.backends import (
     BackendMeta,
-    TableBackendProtocol,
+    TableBackend,
     TabularData,
 )
 from ngio.tables.v1 import (
@@ -90,7 +90,7 @@ class Table(Protocol):
     def set_backend(
         self,
         handler: ZarrGroupHandler | None = None,
-        backend: str | TableBackendProtocol = "anndata_v1",
+        backend: TableBackend = "anndata",
     ) -> None:
         """Set the backend store and path for the table.
 
@@ -105,7 +105,7 @@ class Table(Protocol):
     def from_handler(
         cls,
         handler: ZarrGroupHandler,
-        backend: str | TableBackendProtocol | None = None,
+        backend: TableBackend | None = None,
     ) -> "Table":
         """Create a new table from a Zarr group handler."""
         ...
@@ -139,12 +139,12 @@ TableType = TypeVar("TableType", bound=Table)
 class TableMeta(BackendMeta):
     """Base class for table metadata."""
 
-    fractal_table_version: str = "1"
+    table_version: str = "1"
     type: str = "generic_table"
 
     def unique_name(self) -> str:
         """Return the unique name for the table."""
-        return f"{self.type}_v{self.fractal_table_version}"
+        return f"{self.type}_v{self.table_version}"
 
 
 def _get_meta(handler: ZarrGroupHandler) -> TableMeta:
@@ -175,7 +175,7 @@ class ImplementedTables:
         self,
         meta: TableMeta,
         handler: ZarrGroupHandler,
-        backend: str | TableBackendProtocol | None = None,
+        backend: TableBackend | None = None,
         strict: bool = True,
     ) -> Table:
         """Try to get a handler for the given store based on the metadata version."""
@@ -196,7 +196,7 @@ class ImplementedTables:
         """Register a new table handler."""
         meta = TableMeta(
             type=handler.table_type(),
-            fractal_table_version=handler.version(),
+            table_version=handler.version(),
         )
 
         if meta.unique_name() in self._implemented_tables and not overwrite:
@@ -264,7 +264,7 @@ class TablesContainer:
     def get(
         self,
         name: str,
-        backend: str | TableBackendProtocol | None = None,
+        backend: TableBackend | None = None,
         strict: bool = True,
     ) -> Table:
         """Get a label from the group."""
@@ -285,7 +285,7 @@ class TablesContainer:
         self,
         name: str,
         table_cls: type[TableType],
-        backend: str | TableBackendProtocol | None = None,
+        backend: TableBackend | None = None,
     ) -> TableType:
         """Get a table from the group as a specific type."""
         if name not in self.list():
@@ -301,7 +301,7 @@ class TablesContainer:
         self,
         name: str,
         table: Table,
-        backend: str | TableBackendProtocol = "anndata_v1",
+        backend: TableBackend = "anndata",
         overwrite: bool = False,
     ) -> None:
         """Add a table to the group."""
@@ -357,7 +357,7 @@ def open_tables_container(
 
 def open_table(
     store: StoreOrGroup,
-    backend: str | TableBackendProtocol | None = None,
+    backend: TableBackend | None = None,
     cache: bool = False,
     mode: AccessModeLiteral = "a",
     parallel_safe: bool = False,
@@ -375,7 +375,7 @@ def open_table(
 def open_table_as(
     store: StoreOrGroup,
     table_cls: type[TableType],
-    backend: str | TableBackendProtocol = "anndata_v1",
+    backend: TableBackend | None = None,
     cache: bool = False,
     mode: AccessModeLiteral = "a",
     parallel_safe: bool = False,
@@ -393,7 +393,7 @@ def open_table_as(
 def write_table(
     store: StoreOrGroup,
     table: Table,
-    backend: str | TableBackendProtocol = "anndata_v1",
+    backend: TableBackend = "anndata",
     cache: bool = False,
     mode: AccessModeLiteral = "a",
     parallel_safe: bool = False,

ngio/tables/v1/__init__.py

@@ -1,14 +1,23 @@
 """Tables implementations for fractal_tables v1."""
 
-from ngio.tables.v1._condition_table import ConditionTableV1
-from ngio.tables.v1._feature_table import FeatureTableV1
+from ngio.tables.v1._condition_table import ConditionTableMeta, ConditionTableV1
+from ngio.tables.v1._feature_table import FeatureTableMeta, FeatureTableV1
 from ngio.tables.v1._generic_table import GenericTable
-from ngio.tables.v1._roi_table import MaskingRoiTableV1, RoiTableV1
+from ngio.tables.v1._roi_table import (
+    MaskingRoiTableV1,
+    MaskingRoiTableV1Meta,
+    RoiTableV1,
+    RoiTableV1Meta,
+)
 
 __all__ = [
+    "ConditionTableMeta",
     "ConditionTableV1",
+    "FeatureTableMeta",
     "FeatureTableV1",
     "GenericTable",
     "MaskingRoiTableV1",
+    "MaskingRoiTableV1Meta",
     "RoiTableV1",
+    "RoiTableV1Meta",
 ]

ngio/tables/v1/_condition_table.py

@@ -1,14 +1,18 @@
 """Implementation of a generic table class."""
 
 from ngio.tables.abstract_table import AbstractBaseTable
-from ngio.tables.backends import BackendMeta, TableBackendProtocol, TabularData
+from ngio.tables.backends import (
+    BackendMeta,
+    TableBackend,
+    TabularData,
+)
 from ngio.utils import ZarrGroupHandler
 
 
 class ConditionTableMeta(BackendMeta):
     """Metadata for the condition table."""
 
-    fractal_table_version: str | None = "1"
+    table_version: str | None = "1"
     type: str | None = "condition_table"
 
 
@@ -58,7 +62,7 @@ class ConditionTableV1(AbstractBaseTable):
     def from_handler(
         cls,
         handler: ZarrGroupHandler,
-        backend: str | TableBackendProtocol | None = None,
+        backend: TableBackend | None = None,
     ) -> "ConditionTableV1":
         return cls._from_handler(
             handler=handler,

ngio/tables/v1/_feature_table.py

@@ -6,21 +6,14 @@ https://fractal-analytics-platform.github.io/fractal-tasks-core/tables/
 
 from typing import Literal
 
-from pydantic import BaseModel
+from pydantic import BaseModel, Field
 
 from ngio.tables.abstract_table import AbstractBaseTable
-from ngio.tables.backends import BackendMeta, TableBackendProtocol, TabularData
+from ngio.tables.backends import BackendMeta, TableBackend, TabularData
 from ngio.utils import NgioValueError
 from ngio.utils._zarr_utils import ZarrGroupHandler
 
 
-class GenericTableMeta(BackendMeta):
-    """Metadata for the ROI table."""
-
-    fractal_table_version: str | None = None
-    type: str | None = None
-
-
 class RegionMeta(BaseModel):
     """Metadata for the region."""
 
@@ -30,12 +23,17 @@ class RegionMeta(BaseModel):
 class FeatureTableMeta(BackendMeta):
     """Metadata for the ROI table."""
 
-    fractal_table_version: Literal["1"] = "1"
+    table_version: Literal["1"] = "1"
     type: Literal["feature_table"] = "feature_table"
     region: RegionMeta | None = None
-    instance_key: str = "label"
+    instance_key: str = "label" # Legacy field, kept for compatibility
+    # Backend metadata
     index_key: str | None = "label"
     index_type: Literal["int", "str"] | None = "int"
+    # Columns optional types
+    categorical_columns: list[str] = Field(default_factory=list)
+    measurement_columns: list[str] = Field(default_factory=list)
+    metadata_columns: list[str] = Field(default_factory=list)
 
 
 class FeatureTableV1(AbstractBaseTable):
@@ -85,7 +83,7 @@ class FeatureTableV1(AbstractBaseTable):
     def from_handler(
         cls,
         handler: ZarrGroupHandler,
-        backend: str | TableBackendProtocol | None = None,
+        backend: TableBackend | None = None,
     ) -> "FeatureTableV1":
         return cls._from_handler(
             handler=handler,

ngio/tables/v1/_generic_table.py

@@ -1,10 +1,21 @@
 """Implementation of a generic table class."""
 
 from ngio.tables.abstract_table import AbstractBaseTable
-from ngio.tables.backends import BackendMeta, TableBackendProtocol
+from ngio.tables.backends import BackendMeta, TableBackend
 from ngio.utils import ZarrGroupHandler
 
 
+class GenericTableMeta(BackendMeta):
+    """Metadata for the generic table.
+
+    This is used to store metadata for a generic table.
+    It does not have a specific definition.
+    """
+
+    table_version: str | None = "1"
+    type: str | None = "generic_table"
+
+
 class GenericTable(AbstractBaseTable):
     """Class to a non-specific table.
 
@@ -29,7 +40,7 @@ class GenericTable(AbstractBaseTable):
     def from_handler(
         cls,
         handler: ZarrGroupHandler,
-        backend: str | TableBackendProtocol | None = None,
+        backend: TableBackend | None = None,
     ) -> "GenericTable":
         return cls._from_handler(
             handler=handler,

ngio/tables/v1/_roi_table.py

@@ -15,10 +15,14 @@ from pydantic import BaseModel
 from ngio.common import Roi
 from ngio.tables.abstract_table import (
     AbstractBaseTable,
-    TableBackendProtocol,
     TabularData,
 )
-from ngio.tables.backends import BackendMeta, convert_to_pandas, normalize_pandas_df
+from ngio.tables.backends import (
+    BackendMeta,
+    TableBackend,
+    convert_to_pandas,
+    normalize_pandas_df,
+)
 from ngio.utils import (
     NgioTableValidationError,
     NgioValueError,
@@ -302,7 +306,7 @@ class GenericRoiTableV1(AbstractBaseTable):
 class RoiTableV1Meta(BackendMeta):
     """Metadata for the ROI table."""
 
-    fractal_table_version: Literal["1"] = "1"
+    table_version: Literal["1"] = "1"
     type: Literal["roi_table"] = "roi_table"
     index_key: str | None = "FieldIndex"
     index_type: Literal["str", "int"] | None = "str"
@@ -334,7 +338,7 @@ class RoiTableV1(GenericRoiTableV1):
     def from_handler(
         cls,
         handler: ZarrGroupHandler,
-        backend: str | TableBackendProtocol | None = None,
+        backend: TableBackend | None = None,
     ) -> "RoiTableV1":
         table = cls._from_handler(
             handler=handler,
@@ -358,7 +362,7 @@ class RegionMeta(BaseModel):
 class MaskingRoiTableV1Meta(BackendMeta):
     """Metadata for the ROI table."""
 
-    fractal_table_version: Literal["1"] = "1"
+    table_version: Literal["1"] = "1"
     type: Literal["masking_roi_table"] = "masking_roi_table"
     region: RegionMeta | None = None
     instance_key: str = "label"
@@ -409,7 +413,7 @@ class MaskingRoiTableV1(GenericRoiTableV1):
     def from_handler(
         cls,
         handler: ZarrGroupHandler,
-        backend: str | TableBackendProtocol | None = None,
+        backend: TableBackend | None = None,
     ) -> "MaskingRoiTableV1":
         table = cls._from_handler(
             handler=handler,

{ngio-0.3.0a0.dist-info → ngio-0.3.0a1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: ngio
-Version: 0.3.0a0
+Version: 0.3.0a1
 Summary: Next Generation file format IO
 Project-URL: homepage, https://github.com/fractal-analytics-platform/ngio
 Project-URL: repository, https://github.com/fractal-analytics-platform/ngio
@@ -50,6 +50,7 @@ Requires-Dist: mkdocs; extra == 'docs'
 Requires-Dist: mkdocs-autorefs; extra == 'docs'
 Requires-Dist: mkdocs-git-committers-plugin-2; extra == 'docs'
 Requires-Dist: mkdocs-git-revision-date-localized-plugin; extra == 'docs'
+Requires-Dist: mkdocs-include-markdown-plugin; extra == 'docs'
 Requires-Dist: mkdocs-jupyter; extra == 'docs'
 Requires-Dist: mkdocs-material; extra == 'docs'
 Requires-Dist: mkdocstrings[python]; extra == 'docs'

{ngio-0.3.0a0.dist-info → ngio-0.3.0a1.dist-info}/RECORD

@@ -11,16 +11,16 @@ ngio/common/_slicer.py,sha256=AKpwXRncOmF9nhjKYma0C_41WqAgSv860beKGx-aw-0,3075
 ngio/common/_table_ops.py,sha256=oTjCcecBOG_GJoLgJLgag6yl_nznThOKBKANQJow0h8,15493
 ngio/common/_zoom.py,sha256=KsURa5VuixmpbAAY5-6obmuQV8vfiHKZqBxZDXvchpM,5473
 ngio/hcs/__init__.py,sha256=5oAYT_454WGhms97kxo8gS4_rKHtFf_x-9uu8M_VeVM,356
-ngio/hcs/plate.py,sha256=kGttwZu9JY5maRnfyO1RcOxoxi5OTk-uST5mRU5BJbY,43749
+ngio/hcs/plate.py,sha256=Y_d-ZuV9FmYsSHqwZfcnm_Y024jfdiMd7WlaeNJy73k,43696
 ngio/images/__init__.py,sha256=DYbXAdBgPxyjBRdJrWvU0UnBRI0gUMmx9KaJ-Bucvz4,533
 ngio/images/abstract_image.py,sha256=8PNQPZjiDz-pcTFXSJAVw7nUr4yL_iRwqDEUTKkAnp0,10266
 ngio/images/create.py,sha256=XYn30m_2OSZeHHASYHc3eK9u_gZIYy9wo6mGdRGaq5c,9473
 ngio/images/image.py,sha256=mKLIR2DGQUWtQbf3my2fh0bEPkbbsabUoge_XJPhfWE,17824
 ngio/images/label.py,sha256=qgbBHFPGYpUR2fHf1OiXZh4sn0FgCeeWwH1F4SrOM1c,10460
 ngio/images/masked_image.py,sha256=IBo8x2jHyXBXn7ORo8fSiwBPjV_1JOTb_vatjKNxbJ0,8531
-ngio/images/ome_zarr_container.py,sha256=a59d3AsKsANs7c7Ip7e734kSo4qV-Gsc_epxtGkS3Tk,30056
+ngio/images/ome_zarr_container.py,sha256=jOodimQzAnaLUSYG1OnBsWqtHeL8_V4wkg_4RSXbwcM,30003
 ngio/ome_zarr_meta/__init__.py,sha256=oZ8PEsWM7U0KwzpsnvVfX9k4UfuTz5sZ8B6B9eY5hyY,1193
-ngio/ome_zarr_meta/_meta_handlers.py,sha256=BLvYt5PONYrWkEb2XgEiAXR_OX9rfeX_C0eEqen0jQA,25549
+ngio/ome_zarr_meta/_meta_handlers.py,sha256=ctknNDT8jxwyvxQf9on5gW31H1tRRsnneO38GT2UXoE,25880
 ngio/ome_zarr_meta/ngio_specs/__init__.py,sha256=05NQukZG0nNvjzf8AKWGu7PhjhQcImGSAOK3D3Bg-Js,1786
 ngio/ome_zarr_meta/ngio_specs/_axes.py,sha256=Kqe9T7LWa_9o3UWS5uzALyyNluIhXxWhDGxWY4-GIo8,16707
 ngio/ome_zarr_meta/ngio_specs/_channels.py,sha256=2L-HM9K1Xu4qRI2MiXPqgCuHdCBRydEW1StThcqEuvY,15120
@@ -31,31 +31,31 @@ ngio/ome_zarr_meta/ngio_specs/_pixel_size.py,sha256=5TT8250XdCKUnk3OwZeyXIMNFKOg
 ngio/ome_zarr_meta/v04/__init__.py,sha256=dJRzzxyYc81kf-0Hip_bqvbdManaM8XTdQX2meWyCSs,583
 ngio/ome_zarr_meta/v04/_custom_models.py,sha256=5GxiDERvLuvq4QvApcA6EiKLS6hLFX1R0R_9rSaa85A,530
 ngio/ome_zarr_meta/v04/_v04_spec_utils.py,sha256=05tEr2eEP_XVIfBMOAWLT7lzJV4KS5eYrpK8l94tn3w,15876
-ngio/tables/__init__.py,sha256=9-9atLClIQGkRFuECEg9AcmybHTAkQIpPg2jkL9hLyA,773
-ngio/tables/abstract_table.py,sha256=pG0Yg4kbA4JDqhyNj1nMDAv3MqquJjKwFuD52jk-6-w,8210
-ngio/tables/tables_container.py,sha256=FyuuRX7v0DCbTJ9a0vl0bMUM5cdjOC7Xhndp2JMweRo,12039
-ngio/tables/backends/__init__.py,sha256=QhqvPvGX1pmEIQHoVNpRj6OMYzsoiAHFJiMbc87Z54c,1499
-ngio/tables/backends/_abstract_backend.py,sha256=tsbHzSPTX88fiCbVc8khXv5aN68ck6HKG8r5OHkY3S8,7457
+ngio/tables/__init__.py,sha256=np-XWjUY_HkwMfSy_bIRxh5t5SFZJ9yHEtvtbuaaSgg,824
+ngio/tables/abstract_table.py,sha256=naAeDsPTVjDUOnAxj_57UWXApg_nyWCsWdZ0f7bm740,8169
+ngio/tables/tables_container.py,sha256=c7YnzLy2aaDc0jCH8ih8FTAKpAX8dIAu743nF7EjNTY,11871
+ngio/tables/backends/__init__.py,sha256=tx97ZkK5kF_sAGU2kf_ZI9JxbOXn8GVjE0rUUq9h-QM,1525
+ngio/tables/backends/_abstract_backend.py,sha256=jtai3AqcLNZyxYyK0rernbMtcwxWhWAahCS0fPlMNls,7454
+ngio/tables/backends/_anndata.py,sha256=8RX2NO15CLxys3p6gw54Nd-_0WATU4WBlNndX06wvzI,2587
 ngio/tables/backends/_anndata_utils.py,sha256=DBWIcR0btnH-DIvDvzlcnMXoYhhtXc9DstryiOP0Qsg,3122
-ngio/tables/backends/_anndata_v1.py,sha256=6WIF4r7fweENdoLamt_B-Y9NFDw7n3HAxZ65jrCS16Q,2590
-ngio/tables/backends/_csv_v1.py,sha256=euWiqcvqaKhLuP_4ZiPPvOvWz3a3LKJdr00Nsh18ZEs,951
-ngio/tables/backends/_json_v1.py,sha256=mQsi47g5pevQU9ElM176QNpmMDzRrZBEqiRd0k78-yI,3153
-ngio/tables/backends/_non_zarr_backends_v1.py,sha256=SvPPhT6n5TrKUOyV1mNcdHQK49huZ5lwR8EVe9MdydM,7254
-ngio/tables/backends/_parquet_v1.py,sha256=FGrcZKsNoYTaq_I49v2hNemy-My5HrlmRuawo0fPXEI,1417
-ngio/tables/backends/_table_backends.py,sha256=Y_Hc-l4h3FixYf1MoaA1IoaojVWvefdHG7qP6Z1p4po,6492
+ngio/tables/backends/_csv.py,sha256=Ev61D-AUKo4LIhXRmWPJgYbHI7eQdxiajQR574DevEM,932
+ngio/tables/backends/_json.py,sha256=1ZsEuXDJm1rOZV_KjFm8CB0qhv7L1W7L2EGWPf4q_p0,3137
+ngio/tables/backends/_non_zarr_backends.py,sha256=SvPPhT6n5TrKUOyV1mNcdHQK49huZ5lwR8EVe9MdydM,7254
+ngio/tables/backends/_parquet.py,sha256=ic-p86h8lce8q9luBJGRzy6vxlWyJvA0-2l5cUD6OqY,1398
+ngio/tables/backends/_table_backends.py,sha256=9bAwiB93gR8E7NdpH9WMMQhjn34Iz6oW9i_H4upYbW4,6567
 ngio/tables/backends/_utils.py,sha256=tJBSWN6OhO_1ybxl4vT2l3ImB028Fb6h0vaitPRcr8A,19668
-ngio/tables/v1/__init__.py,sha256=iFRO1oQKMJeSP2qOJiPkaySmqPnPvHSwrW30tPVYPuU,418
-ngio/tables/v1/_condition_table.py,sha256=Dc06AB9-bu3pqjE6BypfJ5exuFEryevQ-W85lCLlaMc,1793
-ngio/tables/v1/_feature_table.py,sha256=svQbCSfWSHlR2DQ8wPpb3yOJbCba9ywLpkb9N7S5CCw,3710
-ngio/tables/v1/_generic_table.py,sha256=VlgvUpghmhAx0l2kLH6ngye_K7FkgefpbVJ9x02XIvw,998
-ngio/tables/v1/_roi_table.py,sha256=3gXE60Uj1CJw04le9-QclCOCzv0w6UU9-PwUoaVNmpI,13490
+ngio/tables/v1/__init__.py,sha256=Wr1_9RZFpaN8FYMTnxT9Yjkw4AS7y9FMWailmB_uj5g,617
+ngio/tables/v1/_condition_table.py,sha256=LwtmygyhsSgAUoI_XuzF4lsHhTO5SIJqytxNAxqRCFU,1780
+ngio/tables/v1/_feature_table.py,sha256=6QiaHYTxBGwkIkBndA0pIgTpLSnlkJ6b_Nqs_H5g3GI,3819
+ngio/tables/v1/_generic_table.py,sha256=jFpW1vCDurN-TFQtQEyz1Rqnax7sVQoJzdPPBAVopFE,1239
+ngio/tables/v1/_roi_table.py,sha256=VQDLJnXGniups4bhZxn9ga9LRQnEI5PJzWDrQNsjmDM,13455
 ngio/utils/__init__.py,sha256=r3nuLWgp6-cQlS4ODjYSBrfgdTLkCOVke9jKbn1NpkA,1129
 ngio/utils/_datasets.py,sha256=EdYJHIifpRou4f43dIuiKsdxe4K6FaeS4f1_e_EYrcI,1727
 ngio/utils/_errors.py,sha256=pKQ12LUjQLYE1nUawemA5h7HsgznjaSvV1n2PQU33N0,759
 ngio/utils/_fractal_fsspec_store.py,sha256=0PMqPRCw7CYdLPxsNtp_vMLXfiQVwqs5EWrn2YVEuvA,1549
 ngio/utils/_logger.py,sha256=HIuqD_2ShfFGDswBddcouStbKfL0Vz_ah8cAIFGhbS8,888
 ngio/utils/_zarr_utils.py,sha256=qOI-HL2HsfFLCj_yxsTR-aq4oHpSqS9KR13aEIvhGDY,13593
-ngio-0.3.0a0.dist-info/METADATA,sha256=FxmotsQBOZBxJrlxV9T9Ne_dcfd4apr2arZHV9OOixM,5241
-ngio-0.3.0a0.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
-ngio-0.3.0a0.dist-info/licenses/LICENSE,sha256=UgN_a1QCeNh9rZWfz-wORQFxE3elQzLWPQaoK6N6fxQ,1502
-ngio-0.3.0a0.dist-info/RECORD,,
+ngio-0.3.0a1.dist-info/METADATA,sha256=7yRX4zM74DQkNKw-w5OijTUM7afR7OSks8zLd-1R1ro,5304
+ngio-0.3.0a1.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
+ngio-0.3.0a1.dist-info/licenses/LICENSE,sha256=UgN_a1QCeNh9rZWfz-wORQFxE3elQzLWPQaoK6N6fxQ,1502
+ngio-0.3.0a1.dist-info/RECORD,,