ngio 0.2.8__py3-none-any.whl → 0.3.0__py3-none-any.whl

{ngio-0.2.8.dist-info → ngio-0.3.0.dist-info}/METADATA

@@ -1,9 +1,9 @@
 Metadata-Version: 2.4
 Name: ngio
-Version: 0.2.8
+Version: 0.3.0
 Summary: Next Generation file format IO
-Project-URL: homepage, https://github.com/lorenzocerrone/ngio
-Project-URL: repository, https://github.com/lorenzocerrone/ngio
+Project-URL: homepage, https://github.com/fractal-analytics-platform/ngio
+Project-URL: repository, https://github.com/fractal-analytics-platform/ngio
 Author-email: Lorenzo Cerrone <lorenzo.cerrone@uzh.ch>
 License: BSD-3-Clause
 License-File: LICENSE
@@ -50,6 +50,7 @@ Requires-Dist: mkdocs; extra == 'docs'
 Requires-Dist: mkdocs-autorefs; extra == 'docs'
 Requires-Dist: mkdocs-git-committers-plugin-2; extra == 'docs'
 Requires-Dist: mkdocs-git-revision-date-localized-plugin; extra == 'docs'
+Requires-Dist: mkdocs-include-markdown-plugin; extra == 'docs'
 Requires-Dist: mkdocs-jupyter; extra == 'docs'
 Requires-Dist: mkdocs-material; extra == 'docs'
 Requires-Dist: mkdocstrings[python]; extra == 'docs'

ngio-0.3.0.dist-info/RECORD

@@ -0,0 +1,61 @@
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+ngio-0.3.0.dist-info/RECORD,,

ngio/tables/_validators.py

@@ -1,108 +0,0 @@
-from collections.abc import Iterable
-from typing import Protocol
-
-import pandas as pd
-
-from ngio.utils import NgioTableValidationError
-
-
-class TableValidator(Protocol):
-    def __call__(self, table: pd.DataFrame) -> pd.DataFrame:
-        """Validate the table DataFrame.
-
-        A Validator is just a simple callable that takes a
-            DataFrame and returns a DataFrame.
-
-        If the DataFrame is valid, the same DataFrame is returned.
-        If the DataFrame is invalid, the Validator can either modify the DataFrame
-            to make it valid or raise a NgioTableValidationError.
-
-        Args:
-            table (pd.DataFrame): The DataFrame to validate.
-
-        Returns:
-            pd.DataFrame: The validated DataFrame.
-
-        """
-        ...
-
-
-def validate_table(
-    table_df: pd.DataFrame,
-    validators: Iterable[TableValidator] | None = None,
-) -> pd.DataFrame:
-    """Validate the table DataFrame.
-
-    Args:
-        table_df (pd.DataFrame): The DataFrame to validate.
-        validators (Collection[Validator] | None): A collection of functions
-            used to validate the table. Default is None.
-
-    Returns:
-        pd.DataFrame: The validated DataFrame.
-    """
-    validators = validators or []
-
-    # Apply all provided validators
-    for validator in validators:
-        table_df = validator(table_df)
-
-    return table_df
-
-
-####################################################################################################
-#
-# Common table validators
-#
-####################################################################################################
-def validate_columns(
-    table_df: pd.DataFrame,
-    required_columns: list[str],
-    optional_columns: list[str] | None = None,
-) -> pd.DataFrame:
-    """Validate the columns headers of the table.
-
-    If a required column is missing, a TableValidationError is raised.
-    If a list of optional columns is provided, only required and optional columns are
-        allowed in the table.
-
-    Args:
-        table_df (pd.DataFrame): The DataFrame to validate.
-        required_columns (list[str]): A list of required columns.
-        optional_columns (list[str] | None): A list of optional columns.
-            Default is None.
-
-    Returns:
-        pd.DataFrame: The validated DataFrame.
-    """
-    table_header = table_df.columns
-    for column in required_columns:
-        if column not in table_header:
-            raise NgioTableValidationError(
-                f"Could not find required column: {column} in the table"
-            )
-
-    if optional_columns is None:
-        return table_df
-
-    possible_columns = [*required_columns, *optional_columns]
-    for column in table_header:
-        if column not in possible_columns:
-            raise NgioTableValidationError(
-                f"Could not find column: {column} in the list of possible columns. ",
-                f"Possible columns are: {possible_columns}",
-            )
-
-    return table_df
-
-
-def validate_unique_index(table_df: pd.DataFrame) -> pd.DataFrame:
-    """Validate that the index of the table is unique."""
-    if table_df.index.is_unique:
-        return table_df
-
-    # Find the duplicates
-    duplicates = table_df.index[table_df.index.duplicated()].tolist()
-    raise NgioTableValidationError(
-        f"Index of the table contains duplicates values. Duplicate: {duplicates}"
-    )

ngio-0.2.8.dist-info/RECORD

@@ -1,57 +0,0 @@
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