ngio 0.2.8__py3-none-any.whl → 0.2.10__py3-none-any.whl

ngio/ome_zarr_meta/ngio_specs/_axes.py

@@ -2,15 +2,12 @@
 
 from collections.abc import Collection
 from enum import Enum
-from logging import Logger
 from typing import Literal, TypeVar
 
 import numpy as np
 from pydantic import BaseModel, ConfigDict, Field
 
-from ngio.utils import NgioValidationError, NgioValueError
-
-logger = Logger(__name__)
+from ngio.utils import NgioValidationError, NgioValueError, ngio_logger
 
 T = TypeVar("T")
 
@@ -102,20 +99,20 @@ class Axis(BaseModel):
     def implicit_type_cast(self, cast_type: AxisType) -> "Axis":
         unit = self.unit
         if self.axis_type != cast_type:
-            logger.warning(
+            ngio_logger.warning(
                 f"Axis {self.on_disk_name} has type {self.axis_type}. "
                 f"Casting to {cast_type}."
             )
 
         if cast_type == AxisType.time and unit is None:
-            logger.warning(
+            ngio_logger.warning(
                 f"Time axis {self.on_disk_name} has unit {self.unit}. "
                 f"Casting to {DefaultSpaceUnit}."
             )
             unit = DefaultTimeUnit
 
         if cast_type == AxisType.space and unit is None:
-            logger.warning(
+            ngio_logger.warning(
                 f"Space axis {self.on_disk_name} has unit {unit}. "
                 f"Casting to {DefaultSpaceUnit}."
             )

ngio/tables/v1/_roi_table.py

@@ -321,7 +321,8 @@ class MaskingRoiTableV1(_GenericRoiTableV1[MaskingRoiTableV1Meta]):
         """Create a new ROI table."""
         meta = MaskingRoiTableV1Meta()
         if reference_label is not None:
-            meta.region = RegionMeta(path=reference_label)
+            path = f"../labels/{reference_label}"
+            meta.region = RegionMeta(path=path)
         super().__init__(meta, rois)
 
     def __repr__(self) -> str:

{ngio-0.2.8.dist-info → ngio-0.2.10.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: ngio
-Version: 0.2.8
+Version: 0.2.10
 Summary: Next Generation file format IO
 Project-URL: homepage, https://github.com/lorenzocerrone/ngio
 Project-URL: repository, https://github.com/lorenzocerrone/ngio

{ngio-0.2.8.dist-info → ngio-0.2.10.dist-info}/RECORD

@@ -21,7 +21,7 @@ ngio/images/ome_zarr_container.py,sha256=-9bbzNtsVAjU1X_h78Lr5LOV0JXtOiWVWqmt3DF
 ngio/ome_zarr_meta/__init__.py,sha256=oZ8PEsWM7U0KwzpsnvVfX9k4UfuTz5sZ8B6B9eY5hyY,1193
 ngio/ome_zarr_meta/_meta_handlers.py,sha256=BLvYt5PONYrWkEb2XgEiAXR_OX9rfeX_C0eEqen0jQA,25549
 ngio/ome_zarr_meta/ngio_specs/__init__.py,sha256=05NQukZG0nNvjzf8AKWGu7PhjhQcImGSAOK3D3Bg-Js,1786
-ngio/ome_zarr_meta/ngio_specs/_axes.py,sha256=Kqe9T7LWa_9o3UWS5uzALyyNluIhXxWhDGxWY4-GIo8,16707
+ngio/ome_zarr_meta/ngio_specs/_axes.py,sha256=tHtx6NfBgDcCgDk9CosjIjw1KZJ2qi0i_eoLgrdiEWw,16681
 ngio/ome_zarr_meta/ngio_specs/_channels.py,sha256=2L-HM9K1Xu4qRI2MiXPqgCuHdCBRydEW1StThcqEuvY,15120
 ngio/ome_zarr_meta/ngio_specs/_dataset.py,sha256=hY8ogPPxvCgVg6k02t3zUr24lasYrvnxBd1iPEigdG4,5892
 ngio/ome_zarr_meta/ngio_specs/_ngio_hcs.py,sha256=uh345KQmEQtslIyMmLK9sB-NbjPYxi0Y9FuYIFhd3Rc,17465
@@ -44,14 +44,14 @@ ngio/tables/backends/_utils.py,sha256=D0zI8_b6HEBZ2ER-80JvEEh_2-aCC1kpyKJGDPBPHc
 ngio/tables/v1/__init__.py,sha256=XWi6f_KbjbX45Ku-7uymJRSTVWyFAPAAEp_TXDeZV4s,314
 ngio/tables/v1/_feature_table.py,sha256=2pZEENyZAmn_Awezu8VLGq90d-J7aXd6Ry8gNNR0wAQ,6104
 ngio/tables/v1/_generic_table.py,sha256=O2fu8k_TjhWEZtJxlU3Uj7ZTZnc75vLlvjw5lweSnd8,5710
-ngio/tables/v1/_roi_table.py,sha256=zGoISSC5q0UHyc0hcxfm2xpw2W6wUocoYctdi5nMmwg,11460
+ngio/tables/v1/_roi_table.py,sha256=_0sBUuVuH_XBZlPiWq1RK2_cgXdyu_Y9jPyhzTBUWCE,11499
 ngio/utils/__init__.py,sha256=r3nuLWgp6-cQlS4ODjYSBrfgdTLkCOVke9jKbn1NpkA,1129
 ngio/utils/_datasets.py,sha256=EdYJHIifpRou4f43dIuiKsdxe4K6FaeS4f1_e_EYrcI,1727
 ngio/utils/_errors.py,sha256=pKQ12LUjQLYE1nUawemA5h7HsgznjaSvV1n2PQU33N0,759
 ngio/utils/_fractal_fsspec_store.py,sha256=7qoGLiLi8JQFh9Ej_z5WNwQQuWrujb0f6p9nj8ocsS8,548
 ngio/utils/_logger.py,sha256=HIuqD_2ShfFGDswBddcouStbKfL0Vz_ah8cAIFGhbS8,888
 ngio/utils/_zarr_utils.py,sha256=qOI-HL2HsfFLCj_yxsTR-aq4oHpSqS9KR13aEIvhGDY,13593
-ngio-0.2.8.dist-info/METADATA,sha256=Rf7imDRysf67wo02l22A8DX2TjeWQLndDdzPp48YncY,5215
-ngio-0.2.8.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
-ngio-0.2.8.dist-info/licenses/LICENSE,sha256=UgN_a1QCeNh9rZWfz-wORQFxE3elQzLWPQaoK6N6fxQ,1502
-ngio-0.2.8.dist-info/RECORD,,
+ngio-0.2.10.dist-info/METADATA,sha256=zKKD86qM9mMDMwDZGdn3fYFq7uLO8D5UuobZEFCuyVE,5216
+ngio-0.2.10.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
+ngio-0.2.10.dist-info/licenses/LICENSE,sha256=UgN_a1QCeNh9rZWfz-wORQFxE3elQzLWPQaoK6N6fxQ,1502
+ngio-0.2.10.dist-info/RECORD,,