ngio 0.1.2__py3-none-any.whl → 0.1.3__py3-none-any.whl

ngio/core/ngff_image.py

@@ -300,6 +300,8 @@ class NgffImage:
         store: StoreLike,
         name: str,
         overwrite: bool = True,
+        copy_labels: bool = False,
+        copy_tables: bool = False,
         **kwargs: dict,
     ) -> "NgffImage":
         """Derive a new image from the current image.
@@ -308,6 +310,10 @@ class NgffImage:
             store (StoreLike): The store to create the new image in.
             name (str): The name of the new image.
             overwrite (bool): Whether to overwrite the image if it exists
+            copy_labels (bool): Whether to copy the labels from the current image
+                to the new image.
+            copy_tables (bool): Whether to copy the tables from the current image
+                to the new image.
             **kwargs: Additional keyword arguments.
                 Follow the same signature as `create_empty_ome_zarr_image`.
 
@@ -351,4 +357,31 @@ class NgffImage:
         create_empty_ome_zarr_image(
             **default_kwargs,
         )
-        return NgffImage(store=store)
+
+        new_image = NgffImage(store=store)
+
+        if copy_tables:
+            # TODO: to be refactored when the table location is changed in the spec
+            source_tables_group = self.tables._table_group
+
+            if source_tables_group is None:
+                raise ValueError("No tables group found in the source image.")
+
+            zarr.copy(source=source_tables_group, dest=new_image.group)
+
+            # Reopen the image to get the new tables
+            new_image = NgffImage(store=store)
+
+        if copy_labels:
+            # TODO: to be refactored when the label location is changed in the spec
+            source_labels_group = self.labels._label_group
+
+            if source_labels_group is None:
+                raise ValueError("No labels group found in the source image.")
+
+            zarr.copy(source=source_labels_group, dest=new_image.group)
+
+            # Reopen the image to get the new labels
+            new_image = NgffImage(store=store)
+
+        return new_image

{ngio-0.1.2.dist-info → ngio-0.1.3.dist-info}/METADATA

@@ -1,11 +1,12 @@
-Metadata-Version: 2.3
+Metadata-Version: 2.4
 Name: ngio
-Version: 0.1.2
+Version: 0.1.3
 Summary: Next Generation file format IO
 Project-URL: homepage, https://github.com/lorenzocerrone/ngio
 Project-URL: repository, https://github.com/lorenzocerrone/ngio
 Author-email: Lorenzo Cerrone <lorenzo.cerrone@uzh.ch>
 License: BSD-3-Clause
+License-File: LICENSE
 Classifier: Development Status :: 3 - Alpha
 Classifier: License :: OSI Approved :: BSD License
 Classifier: Programming Language :: Python :: 3

{ngio-0.1.2.dist-info → ngio-0.1.3.dist-info}/RECORD

@@ -4,7 +4,7 @@ ngio/core/dimensions.py,sha256=AyiXXwgfwe1LiJ7cNhefUVTG2GQqVzDiO0ge_KePf8Q,3722
 ngio/core/image_handler.py,sha256=2eiklMWCSZD9ajZHEwYJHB1WoQE92YTVOy7qslrtSaw,7569
 ngio/core/image_like_handler.py,sha256=_k1xs3Uct_FXKoyUDTfQwG755SmiMGlztGhsQW-OtOA,18821
 ngio/core/label_handler.py,sha256=yBWMQbhme0j4XhXcoWuNY0x3Kt_MH3aYTu6peOfWyTc,14102
-ngio/core/ngff_image.py,sha256=7gTPeU4cr51VTODeYEXAwsgXj8fW5NtWzNoLL5DUbSo,12491
+ngio/core/ngff_image.py,sha256=3C4FE9Q-wtKwLn0Cdy7sCGIvFstgZbRWbUq-pUReOG4,13757
 ngio/core/roi.py,sha256=Vn9aKNxRvJs77ZfVFMAdjOzhy2I2ctpikLcbFP5aj74,2884
 ngio/core/utils.py,sha256=Z3_nI7nLtMZT2gHFgEFtAox6fcENiFuQA5n6UuK2uDo,10170
 ngio/io/__init__.py,sha256=g7KmkgRcVBTZbVkqstl_FldUFzz66R-b__HV9hsLvtc,400
@@ -38,7 +38,7 @@ ngio/utils/_common_types.py,sha256=ylo6RfCyKVyXPx1Mz7WAwFfz8F85R9yd2_TPlRGRUyo,1
 ngio/utils/_errors.py,sha256=rLy9LOFkaEmsSD0-nToKUrXY1ZuPfcpcGpmeHVSnTNg,583
 ngio/utils/_logger.py,sha256=zvFG-Ta3ZIJxTyY93zYoPGp2A6TTUf7mSO0zr_uFy4A,837
 ngio/utils/_pydantic_utils.py,sha256=uN5-76cjE3bvV8GvLX62fpxoRi8GOsZu6K5aynGH1bY,1711
-ngio-0.1.2.dist-info/METADATA,sha256=8F1QCxbL9n5L3KJ7CkhDEhd_3WPD16vTN4IEwLRdWyE,5683
-ngio-0.1.2.dist-info/WHEEL,sha256=C2FUgwZgiLbznR-k0b_5k3Ai_1aASOXDss3lzCUsUug,87
-ngio-0.1.2.dist-info/licenses/LICENSE,sha256=UgN_a1QCeNh9rZWfz-wORQFxE3elQzLWPQaoK6N6fxQ,1502
-ngio-0.1.2.dist-info/RECORD,,
+ngio-0.1.3.dist-info/METADATA,sha256=H75ePMg5vNzlZ2KGAmblELVRXevDwxOqMDwgJaIZpxU,5705
+ngio-0.1.3.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
+ngio-0.1.3.dist-info/licenses/LICENSE,sha256=UgN_a1QCeNh9rZWfz-wORQFxE3elQzLWPQaoK6N6fxQ,1502
+ngio-0.1.3.dist-info/RECORD,,

{ngio-0.1.2.dist-info → ngio-0.1.3.dist-info}/WHEEL

@@ -1,4 +1,4 @@
 Wheel-Version: 1.0
-Generator: hatchling 1.26.3
+Generator: hatchling 1.27.0
 Root-Is-Purelib: true
 Tag: py3-none-any