nettracer3d 1.0.4__py3-none-any.whl → 1.0.5__py3-none-any.whl

nettracer3d/nettracer_gui.py

@@ -10087,7 +10087,7 @@ class ViolinDialog(QDialog):
         # Convert all remaining columns to float type (batch conversion)
         df_copy = df_copy.astype(float)
         
-        # First, calculate the centerpoint for each column by finding the median across all identity groups
+        # First, calculate the centerpoint for each column by finding the min across all identity groups
         column_centerpoints = {}
         
         for column in df_copy.columns:
@@ -10098,7 +10098,7 @@ class ViolinDialog(QDialog):
                 valid_nodes = [node for node in node_list if node in df_copy.index]
                 if valid_nodes and ((str(identity) == str(column)) or str(identity) == f'{str(column)}+'):
                     # Get the median value for this identity in this column
-                    identity_min = df_copy.loc[valid_nodes, column].median()
+                    identity_min = df_copy.loc[valid_nodes, column].min()
                     centerpoint = identity_min
                     break  # Found the match, no need to continue
             
@@ -10107,6 +10107,7 @@ class ViolinDialog(QDialog):
                 column_centerpoints[column] = centerpoint
             else:
                 # Fallback: if no matching identity, use column median
+                print(f"Could not find {str(column)} in node identities. As a fallback, using the median of all values in this channel rather than the minimum of user-designated valid values.")
                 column_centerpoints[column] = df_copy[column].median()
         
         # Now normalize each column using Z-score-like calculation with identity centerpoint

{nettracer3d-1.0.4.dist-info → nettracer3d-1.0.5.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: nettracer3d
-Version: 1.0.4
+Version: 1.0.5
 Summary: Scripts for intializing and analyzing networks from segmentations of three dimensional images.
 Author-email: Liam McLaughlin <liamm@wustl.edu>
 Project-URL: Documentation, https://nettracer3d.readthedocs.io/en/latest/

{nettracer3d-1.0.4.dist-info → nettracer3d-1.0.5.dist-info}/RECORD

@@ -6,7 +6,7 @@ nettracer3d/modularity.py,sha256=pborVcDBvICB2-g8lNoSVZbIReIBlfeBmjFbPYmtq7Y,224
 nettracer3d/morphology.py,sha256=jyDjYzrZ4LvI5jOyw8DLsxmo-i5lpqHsejYpW7Tq7Mo,19786
 nettracer3d/neighborhoods.py,sha256=lh4_zuTwgTq-u8VHy72buBfZf58FEJo9sH3IIBuZr68,52735
 nettracer3d/nettracer.py,sha256=6r5aGtmiHxGkfCh5lJuREAoloZ3WKvcaRAD7kmWXedk,273957
-nettracer3d/nettracer_gui.py,sha256=0QzoDa6o2z-iVZzM3v4tePFV-tvw-lkD_24tQ0fZ1sU,666134
+nettracer3d/nettracer_gui.py,sha256=GannK0Yvq80I0Pz6HxVlfiow6lcLlmJAsisenUq2hPQ,666323
 nettracer3d/network_analysis.py,sha256=kBzsVaq4dZkMe0k-VGvQIUvM-tK0ZZ8bvb-wtsugZRQ,46150
 nettracer3d/network_draw.py,sha256=F7fw6Pcf4qWOhdKwLmhwqWdschbDlHzwCVolQC9imeU,14117
 nettracer3d/node_draw.py,sha256=kZcR1PekLg0riioNeGcALIXQyZ5PtHA_9MT6z7Zovdk,10401
@@ -17,9 +17,9 @@ nettracer3d/segmenter.py,sha256=aOO3PwZ2UeizEIFX7N8midwzTzbEDzgM2jQ7WTdbrUg,7067
 nettracer3d/segmenter_GPU.py,sha256=OUekQljLKPiC4d4hNZmqrRa9HSVQ6HcCnILiAfHE5Hg,78051
 nettracer3d/simple_network.py,sha256=dkG4jpc4zzdeuoaQobgGfL3PNo6N8dGKQ5hEEubFIvA,9947
 nettracer3d/smart_dilate.py,sha256=TvRUh6B4q4zIdCO1BWH-xgTdND5OUNmo99eyxG9oIAU,27145
-nettracer3d-1.0.4.dist-info/licenses/LICENSE,sha256=jnNT-yBeIAKAHpYthPvLeqCzJ6nSurgnKmloVnfsjCI,764
-nettracer3d-1.0.4.dist-info/METADATA,sha256=VMs_Lcaa3xnnLTrror42GmRUJBdzIcyGk0sMtJZZ9Eo,7120
-nettracer3d-1.0.4.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-nettracer3d-1.0.4.dist-info/entry_points.txt,sha256=Nx1rr_0QhJXDBHAQg2vcqCzLMKBzSHfwy3xwGkueVyc,53
-nettracer3d-1.0.4.dist-info/top_level.txt,sha256=zsYy9rZwirfCEOubolhee4TyzqBAL5gSUeFMzhFTX8c,12
-nettracer3d-1.0.4.dist-info/RECORD,,
+nettracer3d-1.0.5.dist-info/licenses/LICENSE,sha256=jnNT-yBeIAKAHpYthPvLeqCzJ6nSurgnKmloVnfsjCI,764
+nettracer3d-1.0.5.dist-info/METADATA,sha256=_0HLxnSBy83kTuLBk9HlSh_1-sQjoeJwJTXUtGdIEPw,7120
+nettracer3d-1.0.5.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+nettracer3d-1.0.5.dist-info/entry_points.txt,sha256=Nx1rr_0QhJXDBHAQg2vcqCzLMKBzSHfwy3xwGkueVyc,53
+nettracer3d-1.0.5.dist-info/top_level.txt,sha256=zsYy9rZwirfCEOubolhee4TyzqBAL5gSUeFMzhFTX8c,12
+nettracer3d-1.0.5.dist-info/RECORD,,