nettracer3d 0.9.0__py3-none-any.whl → 0.9.2__py3-none-any.whl

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Files changed (11) hide show
  1. nettracer3d/neighborhoods.py +107 -16
  2. nettracer3d/nettracer.py +60 -31
  3. nettracer3d/nettracer_gui.py +991 -351
  4. nettracer3d/segmenter.py +514 -372
  5. nettracer3d/segmenter_GPU.py +434 -281
  6. {nettracer3d-0.9.0.dist-info → nettracer3d-0.9.2.dist-info}/METADATA +6 -14
  7. {nettracer3d-0.9.0.dist-info → nettracer3d-0.9.2.dist-info}/RECORD +11 -11
  8. {nettracer3d-0.9.0.dist-info → nettracer3d-0.9.2.dist-info}/WHEEL +0 -0
  9. {nettracer3d-0.9.0.dist-info → nettracer3d-0.9.2.dist-info}/entry_points.txt +0 -0
  10. {nettracer3d-0.9.0.dist-info → nettracer3d-0.9.2.dist-info}/licenses/LICENSE +0 -0
  11. {nettracer3d-0.9.0.dist-info → nettracer3d-0.9.2.dist-info}/top_level.txt +0 -0
{nettracer3d-0.9.0.dist-info → nettracer3d-0.9.2.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: nettracer3d
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- Version: 0.9.0
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+ Version: 0.9.2
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  Summary: Scripts for intializing and analyzing networks from segmentations of three dimensional images.
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  Author-email: Liam McLaughlin <liamm@wustl.edu>
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  Project-URL: Documentation, https://nettracer3d.readthedocs.io/en/latest/
@@ -110,16 +110,8 @@ McLaughlin, L., Zhang, B., Sharma, S. et al. Three dimensional multiscalar neuro
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  NetTracer3D was developed by Liam McLaughlin while working under Dr. Sanjay Jain at Washington University School of Medicine.
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- -- Version 0.9.0 Updates --
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- * Note that this includes updates for 0.8.3 - 0.9.0
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- * Bug Fixes
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- * Updated network histogram statistics menu, and moved degree distribution here
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- * Added gray watershed
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- * Updated binary watershed
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- * Improved branch labelling method
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- * Updated branch removal in skeletonization method to no longer trim branches that do not reach their node.
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- * Added default branchpoint and branch-adjacency calculation options.
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- * Improved speed of painting and panning.
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- * Enabled the nearest neighbor method to handle non-centroid objects, for the first neighbor at least. And updated it to actually predict theoretical clustering when coloring the heatmap.
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- * Improved segmenter.
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- * Added centroids UMAP method.
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+ -- Version 0.9.2 Updates --
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+ * Image viewer canvas window can now be popped out into a separate window.
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+ * Image pyramid calculation is more dynamic instead of using arbitrary size thresholds.
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+ * Adjusted pan mode
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+ * Some bug fixes.
{nettracer3d-0.9.0.dist-info → nettracer3d-0.9.2.dist-info}/RECORD RENAMED
@@ -4,22 +4,22 @@ nettracer3d/community_extractor.py,sha256=QG2v2y9lKb07LRU0zXCAlA_z-96BNqLHh5xP17
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  nettracer3d/excelotron.py,sha256=X9v_mte8gJBPNGdj6NJNUYja0Z6eorVoKAFx4nHiMnU,72058
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  nettracer3d/modularity.py,sha256=pborVcDBvICB2-g8lNoSVZbIReIBlfeBmjFbPYmtq7Y,22443
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  nettracer3d/morphology.py,sha256=jyDjYzrZ4LvI5jOyw8DLsxmo-i5lpqHsejYpW7Tq7Mo,19786
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- nettracer3d/neighborhoods.py,sha256=qOmN8gDZM-J5zsFFaQ772obj6PzsiISXzVZgnlmGGS8,41349
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- nettracer3d/nettracer.py,sha256=cuHc0djb6auNgZ6c38kow9N4zTN7ve00gGBnBSUgEAc,263183
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- nettracer3d/nettracer_gui.py,sha256=_JcvHLqb68TooYWu8yFkDLWSJ8wMc6IZ7VFMBzmwenE,568388
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+ nettracer3d/neighborhoods.py,sha256=iIaHU1COIdRtzRpAuIQKfLGLNKYFK3dL8Vb_EeJIlEA,46459
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+ nettracer3d/nettracer.py,sha256=PBlvgCI65pwhMjTBuDl5CnHtv7unU8PMkyGt3Mz_a30,264443
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+ nettracer3d/nettracer_gui.py,sha256=RBmt--IhiUWlHy0CI_DK6GEXEREWZyQcF7FNdrUK2WA,600327
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  nettracer3d/network_analysis.py,sha256=kBzsVaq4dZkMe0k-VGvQIUvM-tK0ZZ8bvb-wtsugZRQ,46150
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  nettracer3d/network_draw.py,sha256=F7fw6Pcf4qWOhdKwLmhwqWdschbDlHzwCVolQC9imeU,14117
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  nettracer3d/node_draw.py,sha256=kZcR1PekLg0riioNeGcALIXQyZ5PtHA_9MT6z7Zovdk,10401
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  nettracer3d/painting.py,sha256=K_dwngivw80r-Yyg4btKMsWGn566ZE9PnrQl986uxJE,23497
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  nettracer3d/proximity.py,sha256=ZCfthYpQbDBwXBcVioxyzgO9PZACu6mQ8pSXdldP1TM,38592
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  nettracer3d/run.py,sha256=xYeaAc8FCx8MuzTGyL3NR3mK7WZzffAYAH23bNRZYO4,127
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- nettracer3d/segmenter.py,sha256=_ZBLe2eqV9c5yxuyfN69XR5mBoc_OD-CZjwdTCUV0YQ,67045
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- nettracer3d/segmenter_GPU.py,sha256=SGOsy8tSRlxAnD1OrJmjhiQ3k6CWiUFZZdrN6pkkgeU,69057
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+ nettracer3d/segmenter.py,sha256=-Llkhp3TlAIBXZNhcfMFQRdg0vec1xtlOm0c4_bSU9U,75761
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+ nettracer3d/segmenter_GPU.py,sha256=optCZ_zLIfe99rgqmyKWUZlWW5TF5jEC_C3keu1m7VQ,77771
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  nettracer3d/simple_network.py,sha256=dkG4jpc4zzdeuoaQobgGfL3PNo6N8dGKQ5hEEubFIvA,9947
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  nettracer3d/smart_dilate.py,sha256=TvRUh6B4q4zIdCO1BWH-xgTdND5OUNmo99eyxG9oIAU,27145
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- nettracer3d-0.9.0.dist-info/licenses/LICENSE,sha256=jnNT-yBeIAKAHpYthPvLeqCzJ6nSurgnKmloVnfsjCI,764
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- nettracer3d-0.9.0.dist-info/METADATA,sha256=ZmAGzdynu4-irBp2Duk0AsBo7y5U4TDG9cPJHRsOYno,7684
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- nettracer3d-0.9.0.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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- nettracer3d-0.9.0.dist-info/entry_points.txt,sha256=Nx1rr_0QhJXDBHAQg2vcqCzLMKBzSHfwy3xwGkueVyc,53
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- nettracer3d-0.9.0.dist-info/top_level.txt,sha256=zsYy9rZwirfCEOubolhee4TyzqBAL5gSUeFMzhFTX8c,12
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- nettracer3d-0.9.0.dist-info/RECORD,,
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+ nettracer3d-0.9.2.dist-info/licenses/LICENSE,sha256=jnNT-yBeIAKAHpYthPvLeqCzJ6nSurgnKmloVnfsjCI,764
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+ nettracer3d-0.9.2.dist-info/METADATA,sha256=4lxrFb_E22_2wXMY7mW32K2VvG8OJS2l5s2kJeHOd6w,7179
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+ nettracer3d-0.9.2.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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+ nettracer3d-0.9.2.dist-info/entry_points.txt,sha256=Nx1rr_0QhJXDBHAQg2vcqCzLMKBzSHfwy3xwGkueVyc,53
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+ nettracer3d-0.9.2.dist-info/top_level.txt,sha256=zsYy9rZwirfCEOubolhee4TyzqBAL5gSUeFMzhFTX8c,12
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+ nettracer3d-0.9.2.dist-info/RECORD,,