nettracer3d 0.8.4__py3-none-any.whl → 0.8.6__py3-none-any.whl

nettracer3d/smart_dilate.py

@@ -529,7 +529,7 @@ def compute_distance_transform_GPU(nodes, return_dists = False, sampling = [1, 1
 
 
 def compute_distance_transform(nodes, return_dists = False, sampling = [1, 1, 1]):
-    print("(Now doing distance transform...)")
+    #print("(Now doing distance transform...)")
     is_pseudo_3d = nodes.shape[0] == 1
     if is_pseudo_3d:
         nodes = np.squeeze(nodes)  # Convert to 2D for processing
@@ -579,7 +579,7 @@ def compute_distance_transform_distance_GPU(nodes, sampling = [1, 1, 1]):
 
 def compute_distance_transform_distance(nodes, sampling = [1, 1, 1]):
 
-    print("(Now doing distance transform...)")
+    #print("(Now doing distance transform...)")
 
     is_pseudo_3d = nodes.shape[0] == 1
     if is_pseudo_3d:

{nettracer3d-0.8.4.dist-info → nettracer3d-0.8.6.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: nettracer3d
-Version: 0.8.4
+Version: 0.8.6
 Summary: Scripts for intializing and analyzing networks from segmentations of three dimensional images.
 Author-email: Liam McLaughlin <liamm@wustl.edu>
 Project-URL: Documentation, https://nettracer3d.readthedocs.io/en/latest/
@@ -104,9 +104,12 @@ This gui is built from the PyQt6 package and therefore may not function on docke
 For a (slightly outdated) video tutorial on using the GUI: https://www.youtube.com/watch?v=cRatn5VTWDY
 
 NetTracer3D is free to use/fork for academic/nonprofit use so long as citation is provided, and is available for commercial use at a fee (see license file for information).
+The current citation is here: 
+
+McLaughlin, L., Zhang, B., Sharma, S. et al. Three dimensional multiscalar neurovascular nephron connectivity map of the human kidney across the lifespan. Nat Commun 16, 5161 (2025). https://doi.org/10.1038/s41467-025-60435-8
 
 NetTracer3D was developed by Liam McLaughlin while working under Dr. Sanjay Jain at Washington University School of Medicine.
 
--- Version 0.8.4 Updates -- 
+-- Version 0.8.6 Updates -- 
 
 	* See Documentation Once Updated

nettracer3d-0.8.6.dist-info/RECORD

@@ -0,0 +1,25 @@
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+nettracer3d/cellpose_manager.py,sha256=qZpTxSkmPb38Pru8TmjJ88xxcD_wM02EfJB5Mw9Xx4Y,6021
+nettracer3d/community_extractor.py,sha256=QG2v2y9lKb07LRU0zXCAlA_z-96BNqLHh5xP17KLmYA,28147
+nettracer3d/excelotron.py,sha256=X9v_mte8gJBPNGdj6NJNUYja0Z6eorVoKAFx4nHiMnU,72058
+nettracer3d/modularity.py,sha256=O9OeKbjD3v6gSFz9K2GzP6LsxlpQaPfeJbM1pyIEigw,21788
+nettracer3d/morphology.py,sha256=jyDjYzrZ4LvI5jOyw8DLsxmo-i5lpqHsejYpW7Tq7Mo,19786
+nettracer3d/neighborhoods.py,sha256=VWubD5CBu9aNPhUea7FbAk9aTOq0FLKR9y-1VT7YkAc,39677
+nettracer3d/nettracer.py,sha256=TEV-nDmkcGP3UjWEor1LtEwm5mFBQu2nB0VRyz9Lt08,253649
+nettracer3d/nettracer_gui.py,sha256=JUk6s0awzK_y3AEsmIXZdF24Nz9lw8tfuV6g-E-v48I,539966
+nettracer3d/network_analysis.py,sha256=kBzsVaq4dZkMe0k-VGvQIUvM-tK0ZZ8bvb-wtsugZRQ,46150
+nettracer3d/network_draw.py,sha256=F7fw6Pcf4qWOhdKwLmhwqWdschbDlHzwCVolQC9imeU,14117
+nettracer3d/node_draw.py,sha256=kZcR1PekLg0riioNeGcALIXQyZ5PtHA_9MT6z7Zovdk,10401
+nettracer3d/painting.py,sha256=gTu-l7CkWiXLj_sQsywIQ5F7igm00zBjJBP62bmjys0,15823
+nettracer3d/proximity.py,sha256=bTaucn_InQ-v1GIk8ug-dXvDhIO59rnBMl5nIwAmNyw,35335
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+nettracer3d/simple_network.py,sha256=dkG4jpc4zzdeuoaQobgGfL3PNo6N8dGKQ5hEEubFIvA,9947
+nettracer3d/smart_dilate.py,sha256=TvRUh6B4q4zIdCO1BWH-xgTdND5OUNmo99eyxG9oIAU,27145
+nettracer3d-0.8.6.dist-info/licenses/LICENSE,sha256=jnNT-yBeIAKAHpYthPvLeqCzJ6nSurgnKmloVnfsjCI,764
+nettracer3d-0.8.6.dist-info/METADATA,sha256=DMFcu_kU32ETwJOlrbLJgTCDUG5Zir6yzuBOAJFO2Kg,7008
+nettracer3d-0.8.6.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+nettracer3d-0.8.6.dist-info/entry_points.txt,sha256=Nx1rr_0QhJXDBHAQg2vcqCzLMKBzSHfwy3xwGkueVyc,53
+nettracer3d-0.8.6.dist-info/top_level.txt,sha256=zsYy9rZwirfCEOubolhee4TyzqBAL5gSUeFMzhFTX8c,12
+nettracer3d-0.8.6.dist-info/RECORD,,

{nettracer3d-0.8.4.dist-info → nettracer3d-0.8.6.dist-info}/licenses/LICENSE

@@ -1,7 +1,5 @@
-NetTracer3D is freely available for academic and nonprofit use and can be obtained from Liam McLaughlin (boom2449@gmail.com) OR at pip (pip install nettracer3d), provided that the following citation is included in any abstract, paper, or presentation utilizing NetTracer3D.
+NetTracer3D is freely available for academic and nonprofit use and can be obtained from Liam McLaughlin (boom2449@gmail.com) OR at pip (pip install nettracer3d), provided that the following citation is included in any abstract, paper, or presentation utilizing NetTracer3D:
 
-Three Dimensional Multiscalar Neurovascular Nephron Connectivity Map of the Human Kidney Across the Lifespan
-Liam McLaughlin, Bo Zhang, Siddharth Sharma, Amanda L. Knoten, Madhurima Kaushal, Jeffrey M. Purkerson, Heidy Huyck, Gloria S. Pryhuber, Joseph P. Gaut, Sanjay Jain
-bioRxiv 2024.07.29.605633; doi: https://doi.org/10.1101/2024.07.29.605633
+McLaughlin, L., Zhang, B., Sharma, S. et al. Three dimensional multiscalar neurovascular nephron connectivity map of the human kidney across the lifespan. Nat Commun 16, 5161 (2025). https://doi.org/10.1038/s41467-025-60435-8
 
 Commercial use is available for a fee. Copyright © is held by Washington University. Please direct all commercial requests for licensing, information, and limited evaluation copies to Washington University's Office of Technology Management at OTM@wustl.edu.

nettracer3d-0.8.4.dist-info/RECORD

@@ -1,24 +0,0 @@
-nettracer3d/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-nettracer3d/cellpose_manager.py,sha256=qZpTxSkmPb38Pru8TmjJ88xxcD_wM02EfJB5Mw9Xx4Y,6021
-nettracer3d/community_extractor.py,sha256=3lcWy64znl6xhl7axhWwdOk3N0dmpSep0259kLXMp9s,28135
-nettracer3d/excelotron.py,sha256=X9v_mte8gJBPNGdj6NJNUYja0Z6eorVoKAFx4nHiMnU,72058
-nettracer3d/modularity.py,sha256=O9OeKbjD3v6gSFz9K2GzP6LsxlpQaPfeJbM1pyIEigw,21788
-nettracer3d/morphology.py,sha256=jyDjYzrZ4LvI5jOyw8DLsxmo-i5lpqHsejYpW7Tq7Mo,19786
-nettracer3d/neighborhoods.py,sha256=ac_gjN7pUlXZZpMSZnUVErKbKtSlInxX2dHe22oDNJA,34532
-nettracer3d/nettracer.py,sha256=zHIUHLfWY3XAQBhcaZmKUqJ6UPCxk0A09cQBAnOK5TE,253362
-nettracer3d/nettracer_gui.py,sha256=QsHMiTW62Hl0jHOnAjSH_l8TAV7-xQBH7cdFfW8HTM0,547961
-nettracer3d/network_analysis.py,sha256=kBzsVaq4dZkMe0k-VGvQIUvM-tK0ZZ8bvb-wtsugZRQ,46150
-nettracer3d/network_draw.py,sha256=F7fw6Pcf4qWOhdKwLmhwqWdschbDlHzwCVolQC9imeU,14117
-nettracer3d/node_draw.py,sha256=kZcR1PekLg0riioNeGcALIXQyZ5PtHA_9MT6z7Zovdk,10401
-nettracer3d/proximity.py,sha256=kSc4PwBJswPup72ZFJgS03fgQLUbRSv-MQmGuAPg_0k,35325
-nettracer3d/run.py,sha256=xYeaAc8FCx8MuzTGyL3NR3mK7WZzffAYAH23bNRZYO4,127
-nettracer3d/segmenter.py,sha256=VatOSpc41lxhPuYLTTejCxG1CcwP5hwiQ3ZFK9OBavA,60115
-nettracer3d/segmenter_GPU.py,sha256=sFVmz_cYIVOQqnfFV3peK9hzb6IoIV5WDQHH9Lws96I,53915
-nettracer3d/simple_network.py,sha256=dkG4jpc4zzdeuoaQobgGfL3PNo6N8dGKQ5hEEubFIvA,9947
-nettracer3d/smart_dilate.py,sha256=nlU5drRgD5xglb3_3tFiCtVEjyqfGgZF56RkVWylRR0,27143
-nettracer3d-0.8.4.dist-info/licenses/LICENSE,sha256=gM207DhJjWrxLuEWXl0Qz5ISbtWDmADfjHp3yC2XISs,888
-nettracer3d-0.8.4.dist-info/METADATA,sha256=3Q1UzbGTRyjogKPQmxPdqEiehxj1aZD9dMVV1uwVNXY,6747
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-nettracer3d-0.8.4.dist-info/entry_points.txt,sha256=Nx1rr_0QhJXDBHAQg2vcqCzLMKBzSHfwy3xwGkueVyc,53
-nettracer3d-0.8.4.dist-info/top_level.txt,sha256=zsYy9rZwirfCEOubolhee4TyzqBAL5gSUeFMzhFTX8c,12
-nettracer3d-0.8.4.dist-info/RECORD,,