nettracer3d 0.5.6__py3-none-any.whl → 0.5.7__py3-none-any.whl

nettracer3d/nettracer_gui.py

@@ -3980,10 +3980,17 @@ class CustomTableView(QTableView):
                 save_menu = context_menu.addMenu("Save As")
                 save_csv = save_menu.addAction("CSV")
                 save_excel = save_menu.addAction("Excel")
+                save_gephi = save_menu.addAction("Gephi")
+                save_graphml = save_menu.addAction("GraphML")
+                save_pajek = save_menu.addAction("Pajek")
                 
                 # Connect the actions - ensure we're saving the active table
                 save_csv.triggered.connect(lambda: self.parent.active_table.save_table_as('csv'))
                 save_excel.triggered.connect(lambda: self.parent.active_table.save_table_as('xlsx'))
+                save_gephi.triggered.connect(lambda: self.parent.active_table.save_table_as('gexf'))
+                save_graphml.triggered.connect(lambda: self.parent.active_table.save_table_as('graphml'))
+                save_pajek.triggered.connect(lambda: self.parent.active_table.save_table_as('net'))
+
 
                 if self == self.parent.selection_table:
                     set_action = context_menu.addAction("Swap with network table (also sets internal network properties - may affect related functions)")
@@ -4061,14 +4068,19 @@ class CustomTableView(QTableView):
             table_name = "Selection"
         
         # Get save file name
-        file_filter = "CSV Files (*.csv)" if file_type == 'csv' else "Excel Files (*.xlsx)"
+        file_filter = ("CSV Files (*.csv)" if file_type == 'csv' else 
+                      "Excel Files (*.xlsx)" if file_type == 'excel' else 
+                      "Gephi Graph (*.gexf)" if file_type == 'gexf' else
+                      "GraphML (*.graphml)" if file_type == 'graphml' else
+                      "Pajek Network (*.net)")
+
         filename, _ = QFileDialog.getSaveFileName(
             self,
             f"Save {table_name} Table As",
             "",
             file_filter
         )
-        
+
         if filename:
             try:
                 if file_type == 'csv':
@@ -4076,11 +4088,28 @@ class CustomTableView(QTableView):
                     if not filename.endswith('.csv'):
                         filename += '.csv'
                     df.to_csv(filename, index=False)
-                else:
+                elif file_type == 'xlsx':
                     # If user didn't type extension, add .xlsx
                     if not filename.endswith('.xlsx'):
                         filename += '.xlsx'
                     df.to_excel(filename, index=False)
+                elif file_type == 'gexf':
+                    # If user didn't type extension, add .gexf
+                    if not filename.endswith('.gexf'):
+                        filename += '.gexf'
+                    #for node in my_network.network.nodes():
+                        #my_network.network.nodes[node]['label'] = str(node)
+                    nx.write_gexf(my_network.network, filename, encoding='utf-8', prettyprint=True)
+                elif file_type == 'graphml':
+                    # If user didn't type extension, add .graphml
+                    if not filename.endswith('.graphml'):
+                        filename += '.graphml'
+                    nx.write_graphml(my_network.network, filename)
+                elif file_type == 'net':
+                    # If user didn't type extension, add .net
+                    if not filename.endswith('.net'):
+                        filename += '.net'
+                    nx.write_pajek(my_network.network, filename)
                     
                 QMessageBox.information(
                     self,

{nettracer3d-0.5.6.dist-info → nettracer3d-0.5.7.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: nettracer3d
-Version: 0.5.6
+Version: 0.5.7
 Summary: Scripts for intializing and analyzing networks from segmentations of three dimensional images.
 Author-email: Liam McLaughlin <mclaughlinliam99@gmail.com>
 Project-URL: User_Tutorial, https://www.youtube.com/watch?v=cRatn5VTWDY
@@ -44,6 +44,6 @@ NetTracer3D is free to use/fork for academic/nonprofit use so long as citation i
 
 NetTracer3D was developed by Liam McLaughlin while working under Dr. Sanjay Jain at Washington University School of Medicine.
 
--- Version 0.5.6 updates --
+-- Version 0.5.7 updates --
 
-1. Minor change - Updated some of the overhead and post-random forrest voxel assignment for the segmenter to be faster. The major bottleneck for this is still querying sklearn which seems a bit harder to work around.
+1. Minor change - Can now export network as .gexf (Gephi), .GraphML, or .net (Pajek) for other network analysis softwares to use.

{nettracer3d-0.5.6.dist-info → nettracer3d-0.5.7.dist-info}/RECORD

@@ -4,7 +4,7 @@ nettracer3d/hub_getter.py,sha256=KiNtxdajLkwB1ftslvrh1FE1Ch9ZCFEmHSEEotwR-To,829
 nettracer3d/modularity.py,sha256=V1f3s_vGd8EuVz27mzq6ycIGr0BWIpH7c7NU4QjgAHU,30247
 nettracer3d/morphology.py,sha256=yQ0GuieMVXOQpaohZlPnkEXEuCUjf8Fg352axyK8nbM,10755
 nettracer3d/nettracer.py,sha256=OE95IH1TfAZvT-htv1LEhw1EpnnEpkA83R5EcGMQDQg,209828
-nettracer3d/nettracer_gui.py,sha256=HN-XJXp_IqmVVHx0p_9u57JNRNW3ssg0InXtmOcdlS8,365657
+nettracer3d/nettracer_gui.py,sha256=TGxxDRfZzSQsurtn_XC1dlt8NLQCPZN0W5LZSbxTAZE,367424
 nettracer3d/network_analysis.py,sha256=MJBBjslA1k_R8ymid77U-qGSgzxFVfzGVQhE0IdhnbE,48046
 nettracer3d/network_draw.py,sha256=F7fw6Pcf4qWOhdKwLmhwqWdschbDlHzwCVolQC9imeU,14117
 nettracer3d/node_draw.py,sha256=k3sCTfUCJs3aH1C1q1gTNxDz9EAQbBd1hsUIJajxRx8,9823
@@ -13,9 +13,9 @@ nettracer3d/run.py,sha256=xYeaAc8FCx8MuzTGyL3NR3mK7WZzffAYAH23bNRZYO4,127
 nettracer3d/segmenter.py,sha256=zFWv9chXZ1rgw24KYKvIaQqkptUHy03vMKjmPgwv0-M,49793
 nettracer3d/simple_network.py,sha256=fP1gkDdtQcHruEZpUdasKdZeVacoLOxKhR3bY0L1CAQ,15426
 nettracer3d/smart_dilate.py,sha256=Kekm6YIVlJniMvJMG6_AwwNmCqK2l4Qtvg9VzzqPKMw,24600
-nettracer3d-0.5.6.dist-info/LICENSE,sha256=gM207DhJjWrxLuEWXl0Qz5ISbtWDmADfjHp3yC2XISs,888
-nettracer3d-0.5.6.dist-info/METADATA,sha256=zkrxl6ONb7W6N2MprFGM9yz2Rxf3UGXTt_1yoHQkSSg,3194
-nettracer3d-0.5.6.dist-info/WHEEL,sha256=jB7zZ3N9hIM9adW7qlTAyycLYW9npaWKLRzaoVcLKcM,91
-nettracer3d-0.5.6.dist-info/entry_points.txt,sha256=Nx1rr_0QhJXDBHAQg2vcqCzLMKBzSHfwy3xwGkueVyc,53
-nettracer3d-0.5.6.dist-info/top_level.txt,sha256=zsYy9rZwirfCEOubolhee4TyzqBAL5gSUeFMzhFTX8c,12
-nettracer3d-0.5.6.dist-info/RECORD,,
+nettracer3d-0.5.7.dist-info/LICENSE,sha256=gM207DhJjWrxLuEWXl0Qz5ISbtWDmADfjHp3yC2XISs,888
+nettracer3d-0.5.7.dist-info/METADATA,sha256=WR2-IsGW-YlgJhNNutjAQfGPcE-Fl_MS1-itY3nT0FQ,3107
+nettracer3d-0.5.7.dist-info/WHEEL,sha256=jB7zZ3N9hIM9adW7qlTAyycLYW9npaWKLRzaoVcLKcM,91
+nettracer3d-0.5.7.dist-info/entry_points.txt,sha256=Nx1rr_0QhJXDBHAQg2vcqCzLMKBzSHfwy3xwGkueVyc,53
+nettracer3d-0.5.7.dist-info/top_level.txt,sha256=zsYy9rZwirfCEOubolhee4TyzqBAL5gSUeFMzhFTX8c,12
+nettracer3d-0.5.7.dist-info/RECORD,,