nettracer3d 0.4.7__py3-none-any.whl → 0.4.8__py3-none-any.whl

nettracer3d/nettracer_gui.py

@@ -5964,8 +5964,19 @@ class MachineWindow(QMainWindow):
     def start_segmentation(self):
 
         self.kill_segmentation()
+        time.sleep(0.1)
+
         print("Beginning new segmentation...")
 
+        if self.parent().active_channel == 0:
+            if self.parent().channel_data[0] is not None:
+                active_data = self.parent().channel_data[0]
+            else:
+                active_data = self.parent().channel_data[1]
+
+        array3 = np.zeros_like(active_data)
+        self.parent().highlight_overlay = array3 #Clear this out for the segmenter to use
+
         if not self.trained:
             return
         else:
@@ -6006,6 +6017,8 @@ class MachineWindow(QMainWindow):
         current_ylim = self.parent().ax.get_ylim()
         self.parent().update_display(preserve_zoom=(current_xlim, current_ylim))
         self.kill_segmentation()
+        time.sleep(0.1)
+
 
     def kill_segmentation(self):
         if hasattr(self, 'segmentation_worker'):
@@ -6018,6 +6031,18 @@ class MachineWindow(QMainWindow):
         if not self.trained:
             return
         else:
+            self.kill_segmentation()
+            time.sleep(0.1)
+
+            if self.parent().active_channel == 0:
+                if self.parent().channel_data[0] is not None:
+                    active_data = self.parent().channel_data[0]
+                else:
+                    active_data = self.parent().channel_data[1]
+
+            array3 = np.zeros_like(active_data)
+            self.parent().highlight_overlay = array3 #Clear this out for the segmenter to use
+
             print("Segmenting entire volume with model...")
             foreground_coords, background_coords = self.segmenter.segment_volume(gpu = self.use_gpu)
 
@@ -6047,6 +6072,8 @@ class MachineWindow(QMainWindow):
         self.parent().brush_mode = False
         self.parent().machine_window = None
         self.kill_segmentation()
+        time.sleep(0.1)
+
 
 
 

{nettracer3d-0.4.7.dist-info → nettracer3d-0.4.8.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: nettracer3d
-Version: 0.4.7
+Version: 0.4.8
 Summary: Scripts for intializing and analyzing networks from segmentations of three dimensional images.
 Author-email: Liam McLaughlin <boom2449@gmail.com>
 Project-URL: User_Manual, https://drive.google.com/drive/folders/1fTkz3n4LN9_VxKRKC8lVQSlrz_wq0bVn?usp=drive_link

{nettracer3d-0.4.7.dist-info → nettracer3d-0.4.8.dist-info}/RECORD

@@ -4,7 +4,7 @@ nettracer3d/hub_getter.py,sha256=KiNtxdajLkwB1ftslvrh1FE1Ch9ZCFEmHSEEotwR-To,829
 nettracer3d/modularity.py,sha256=V1f3s_vGd8EuVz27mzq6ycIGr0BWIpH7c7NU4QjgAHU,30247
 nettracer3d/morphology.py,sha256=CsRWB0DY-vBBlKdF9IQwgfYYZswuE7n1Iu_Osxgmxnw,13042
 nettracer3d/nettracer.py,sha256=hDccGy6RybSJFvY6dsN1l5eM3wKZW93CizlTvgEeyNs,209690
-nettracer3d/nettracer_gui.py,sha256=eljw6WT8lcKHRD8RPQZ3uwtovrN4YbCKqPWLMifxuVI,333511
+nettracer3d/nettracer_gui.py,sha256=HIjUaLPGEwtk-2nkRrgrX-l0vSv1aJC-BEinw4hibek,334463
 nettracer3d/network_analysis.py,sha256=MJBBjslA1k_R8ymid77U-qGSgzxFVfzGVQhE0IdhnbE,48046
 nettracer3d/network_draw.py,sha256=F7fw6Pcf4qWOhdKwLmhwqWdschbDlHzwCVolQC9imeU,14117
 nettracer3d/node_draw.py,sha256=BMiD_FrlOHeGD4AQZ_Emd152PfxFuMgGf2x4S0TOTnw,9752
@@ -13,9 +13,9 @@ nettracer3d/run.py,sha256=xYeaAc8FCx8MuzTGyL3NR3mK7WZzffAYAH23bNRZYO4,127
 nettracer3d/segmenter.py,sha256=tBaNXJMkacpHb37LQzMJIRzlfILH3h9jCJE1NqsABWs,28816
 nettracer3d/simple_network.py,sha256=fP1gkDdtQcHruEZpUdasKdZeVacoLOxKhR3bY0L1CAQ,15426
 nettracer3d/smart_dilate.py,sha256=dvbG2UhWzMQrtDqSj281rixNRgwUHOFGlJZ9RSl6rKs,24590
-nettracer3d-0.4.7.dist-info/LICENSE,sha256=gM207DhJjWrxLuEWXl0Qz5ISbtWDmADfjHp3yC2XISs,888
-nettracer3d-0.4.7.dist-info/METADATA,sha256=_s07qbx05-Skd6nxGt6kU4d7sNIMf0C_2e2wLxHOWDo,2921
-nettracer3d-0.4.7.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
-nettracer3d-0.4.7.dist-info/entry_points.txt,sha256=Nx1rr_0QhJXDBHAQg2vcqCzLMKBzSHfwy3xwGkueVyc,53
-nettracer3d-0.4.7.dist-info/top_level.txt,sha256=zsYy9rZwirfCEOubolhee4TyzqBAL5gSUeFMzhFTX8c,12
-nettracer3d-0.4.7.dist-info/RECORD,,
+nettracer3d-0.4.8.dist-info/LICENSE,sha256=gM207DhJjWrxLuEWXl0Qz5ISbtWDmADfjHp3yC2XISs,888
+nettracer3d-0.4.8.dist-info/METADATA,sha256=FxmRDLIhjeVd8vGkHqBPk44SpuQ7LmI5R6J5nK2OPXU,2921
+nettracer3d-0.4.8.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
+nettracer3d-0.4.8.dist-info/entry_points.txt,sha256=Nx1rr_0QhJXDBHAQg2vcqCzLMKBzSHfwy3xwGkueVyc,53
+nettracer3d-0.4.8.dist-info/top_level.txt,sha256=zsYy9rZwirfCEOubolhee4TyzqBAL5gSUeFMzhFTX8c,12
+nettracer3d-0.4.8.dist-info/RECORD,,