nci-cidc-schemas 0.28.7__py2.py3-none-any.whl → 0.28.13__py2.py3-none-any.whl

cidc_schemas/schemas/templates/assays/tcr_fastq_template.json

@@ -19,17 +19,21 @@
             "merge_pointer": "0/sequencer_platform",
             "type_ref": "assays/components/ngs_assay_core.json#properties/sequencer_platform"
           },
-          "batch id": {
+          "CIMAC Batch ID": {
             "merge_pointer": "0/batch_id",
             "type_ref": "assays/tcr_assay.json#properties/batch_id"
           },
+          "CIDC Submission ID": {
+            "merge_pointer": "0/optional_id",
+            "type_ref": "assays/tcr_assay.json#properties/optional_id"
+          },
           "sequencing run date": {
             "merge_pointer": "0/sequencing_run_date",
             "type_ref": "assays/tcr_assay.json#properties/sequencing_run_date"
           },
           "sample sheet": {
             "merge_pointer": "0/sample_sheet",
-            "gcs_uri_format": "{protocol identifier}/tcr/{batch id}/SampleSheet.csv",
+            "gcs_uri_format": "{protocol identifier}/tcr/{cimac batch id}/SampleSheet.csv",
             "is_artifact": 1,
             "type_ref": "assays/components/local_file.json#properties/file_path"
           }
@@ -47,25 +51,25 @@
             },
             "read 1": {
               "merge_pointer": "0/r1/-",
-              "gcs_uri_format": "{protocol identifier}/tcr/{batch id}/{cimac id}/replicate_{replicate id}/r1.fastq.gz",
+              "gcs_uri_format": "{protocol identifier}/tcr/{cimac batch id}/{cimac id}/replicate_{replicate id}/r1.fastq.gz",
               "is_artifact": "1",
               "type_ref": "assays/components/local_file.json#properties/file_path"
             },
             "read 2": {
               "merge_pointer": "0/r2/-",
-              "gcs_uri_format": "{protocol identifier}/tcr/{batch id}/{cimac id}/replicate_{replicate id}/r2.fastq.gz",
+              "gcs_uri_format": "{protocol identifier}/tcr/{cimac batch id}/{cimac id}/replicate_{replicate id}/r2.fastq.gz",
               "is_artifact" : "1",
               "type_ref": "assays/components/local_file.json#properties/file_path"
             },
             "index 1": {
               "merge_pointer": "0/i1/-",
-              "gcs_uri_format": "{protocol identifier}/tcr/{batch id}/{cimac id}/replicate_{replicate id}/i1.fastq.gz",
+              "gcs_uri_format": "{protocol identifier}/tcr/{cimac batch id}/{cimac id}/replicate_{replicate id}/i1.fastq.gz",
               "is_artifact": "1",
               "type_ref": "assays/components/local_file.json#properties/file_path"
             },
             "index 2": {
               "merge_pointer": "0/i2/-",
-              "gcs_uri_format": "{protocol identifier}/tcr/{batch id}/{cimac id}/replicate_{replicate id}/i2.fastq.gz",
+              "gcs_uri_format": "{protocol identifier}/tcr/{cimac batch id}/{cimac id}/replicate_{replicate id}/i2.fastq.gz",
               "is_artifact" : "1",
               "type_ref": "assays/components/local_file.json#properties/file_path"
             },

cidc_schemas/schemas/templates/assays/tcrseq_rna_template.json

@@ -0,0 +1,59 @@
+{
+    "title": "TCR RNA assay template",
+    "description": "TCR RNA submission.",
+    "prism_template_root_object_schema": "assays/tcrseq_rna_assay.json",
+    "prism_template_root_object_pointer": "/assays/tcrseq_rna/0",
+    "properties": {
+        "worksheets": {
+            "TCR RNA": {
+                "prism_data_object_pointer": "/records/-",
+                "preamble_rows": {
+                    "protocol identifier": {
+                        "merge_pointer": "3/protocol_identifier",
+                        "type_ref": "clinical_trial.json#properties/protocol_identifier"
+                    },
+                    "CIMAC Batch ID": {
+                        "merge_pointer": "0/batch_id",
+                        "type_ref": "assays/mibi_assay.json#properties/batch_id"
+                    },
+                    "CIDC Submission ID": {
+                        "merge_pointer": "0/optional_id",
+                        "type_ref": "assays/mibi_assay.json#properties/optional_id"
+                    },
+                    "assay creator": {
+                        "merge_pointer": "0/assay_creator",
+                        "type_ref": "assays/components/assay_core.json#properties/assay_creator"
+                    },
+                    "sequencer platform": {
+                      "merge_pointer": "0/sequencer_platform",
+                      "type_ref": "assays/components/ngs_assay_core.json#properties/sequencer_platform"
+                    },
+                    "sequencing run date": {
+                      "merge_pointer": "0/sequencing_run_date",
+                      "type_ref": "assays/tcr_assay.json#properties/sequencing_run_date"
+                    }
+                },
+                "data_columns": {
+                    "Samples": {
+                        "cimac id": {
+                            "merge_pointer": "0/cimac_id",
+                            "type_ref": "sample.json#properties/cimac_id"
+                        },
+                        "alpha results file": {
+                            "merge_pointer": "0/alpha_results_file",
+                            "is_artifact": 1,
+                            "gcs_uri_format": "{protocol identifier}/tcrseq_rna/{cimac batch id}/{cimac id}/alpha.csv",
+                            "type_ref": "assays/components/local_file.json#properties/file_path"
+                        },
+                        "beta results file": {
+                            "merge_pointer": "0/beta_results_file",
+                            "is_artifact": 1,
+                            "gcs_uri_format": "{protocol identifier}/tcrseq_rna/{cimac batch id}/{cimac id}/beta.csv",
+                            "type_ref": "assays/components/local_file.json#properties/file_path"
+                        }
+                    }
+                }
+            }
+        }
+    }
+}

cidc_schemas/schemas/templates/assays/visium_template.json

@@ -20,10 +20,14 @@
                         "merge_pointer": "0/assay_creator",
                         "type_ref": "assays/visium_assay.json#properties/assay_creator"
                     },
-                    "batch id": {
+                    "CIMAC Batch ID": {
                         "merge_pointer": "0/batch_id",
                         "type_ref": "assays/visium_assay.json#properties/batch_id"
                     },
+                    "CIDC Submission ID": {
+                        "merge_pointer": "0/optional_id",
+                        "type_ref": "assays/visium_assay.json#properties/optional_id"
+                    },
                     "azimuth reference": {
                         "merge_pointer": "0/azimuth_reference",
                         "type_ref": "assays/components/scrnaseq_preamble.json#properties/azimuth_reference",
@@ -46,7 +50,7 @@
                     },
                     "sample metadata csv": {
                         "merge_pointer": "0/samples_metadata_csv",
-                        "gcs_uri_format": "{protocol identifier}/visium/{batch id}/samples_metadata.csv",
+                        "gcs_uri_format": "{protocol identifier}/visium/{cimac batch id}/samples_metadata.csv",
                         "is_artifact": 1,
                         "type_ref": "assays/components/local_file.json#properties/file_path"
                     }
@@ -68,19 +72,19 @@
                         "Read1 fastq gz": {
                             "merge_pointer": "0/details/read_1_fastq_gz",
                             "is_artifact": 1,
-                            "gcs_uri_format": "{protocol identifier}/visium/{batch id}/{cimac id}/fastq/S1_L00{lane}_R1_001.fastq.gz",
+                            "gcs_uri_format": "{protocol identifier}/visium/{cimac batch id}/{cimac id}/fastq/S1_L00{lane}_R1_001.fastq.gz",
                             "type_ref": "assays/components/local_file.json#properties/file_path"
                         },
                         "Read2 fastq gz": {
                             "merge_pointer": "0/details/read_2_fastq_gz",
                             "is_artifact": 1,
-                            "gcs_uri_format": "{protocol identifier}/visium/{batch id}/{cimac id}/fastq/S1_L00{lane}_R2_001.fastq.gz",
+                            "gcs_uri_format": "{protocol identifier}/visium/{cimac batch id}/{cimac id}/fastq/S1_L00{lane}_R2_001.fastq.gz",
                             "type_ref": "assays/components/local_file.json#properties/file_path"
                         },
                         "Loupe alignment file": {
                             "merge_pointer": "0/details/loupe_alignment_file",
                             "is_artifact": 1,
-                            "gcs_uri_format": "{protocol identifier}/visium/{batch id}/{cimac id}/loupe_alignment_file.json",
+                            "gcs_uri_format": "{protocol identifier}/visium/{cimac batch id}/{cimac id}/loupe_alignment_file.json",
                             "type_ref": "assays/components/local_file.json#properties/file_path",
                             "allow_empty": true
                         },
@@ -106,28 +110,28 @@
                         "brightfield image": {
                             "merge_pointer": "0/details/brightfield_image",
                             "is_artifact": 1,
-                            "gcs_uri_format": "{protocol identifier}/visium/{batch id}/{cimac id}/brightfield.tiff",
+                            "gcs_uri_format": "{protocol identifier}/visium/{cimac batch id}/{cimac id}/brightfield.tiff",
                             "type_ref": "assays/components/local_file.json#properties/file_path",
                             "allow_empty": true
                         },
                         "dark image": {
                             "merge_pointer": "0/details/dark_image",
                             "is_artifact": 1,
-                            "gcs_uri_format": "{protocol identifier}/visium/{batch id}/{cimac id}/dark_image.tiff",
+                            "gcs_uri_format": "{protocol identifier}/visium/{cimac batch id}/{cimac id}/dark_image.tiff",
                             "type_ref": "assays/components/local_file.json#properties/file_path",
                             "allow_empty": true
                         },
                         "colorized image": {
                             "merge_pointer": "0/details/colorized_image",
                             "is_artifact": 1,
-                            "gcs_uri_format": "{protocol identifier}/visium/{batch id}/{cimac id}/colorized.tiff",
+                            "gcs_uri_format": "{protocol identifier}/visium/{cimac batch id}/{cimac id}/colorized.tiff",
                             "type_ref": "assays/components/local_file.json#properties/file_path",
                             "allow_empty": true
                         },
                         "cytassist image": {
                             "merge_pointer": "0/details/cytassist_image",
                             "is_artifact": 1,
-                            "gcs_uri_format": "{protocol identifier}/visium/{batch id}/{cimac id}/cytassist.tiff",
+                            "gcs_uri_format": "{protocol identifier}/visium/{cimac batch id}/{cimac id}/cytassist.tiff",
                             "type_ref": "assays/components/local_file.json#properties/file_path",
                             "allow_empty": true
                         },

cidc_schemas/schemas/templates/assays/wes_bam_template.json

@@ -16,6 +16,14 @@
             "merge_pointer": "0/assay_creator",
             "type_ref": "assays/components/assay_core.json#properties/assay_creator"
           },
+          "CIMAC Batch ID": {
+            "merge_pointer": "0/batch_id",
+            "type_ref": "assays/wes_assay.json#properties/batch_id"
+          },
+          "CIDC Submission ID": {
+            "merge_pointer": "0/optional_id",
+            "type_ref": "assays/wes_assay.json#properties/optional_id"
+          },
           "sequencing protocol": {
             "merge_pointer": "0/sequencing_protocol",
             "type_ref": "assays/wes_assay.json#properties/sequencing_protocol"

cidc_schemas/schemas/templates/assays/wes_fastq_template.json

@@ -16,6 +16,14 @@
             "merge_pointer": "0/assay_creator",
             "type_ref": "assays/components/assay_core.json#properties/assay_creator"
           },
+          "CIMAC Batch ID": {
+            "merge_pointer": "0/batch_id",
+            "type_ref": "assays/wes_assay.json#properties/batch_id"
+          },
+          "CIDC Submission ID": {
+            "merge_pointer": "0/optional_id",
+            "type_ref": "assays/wes_assay.json#properties/optional_id"
+          },
           "sequencing protocol": {
             "merge_pointer": "0/sequencing_protocol",
             "type_ref": "assays/wes_assay.json#properties/sequencing_protocol",

cidc_schemas/template.py

@@ -912,10 +912,6 @@ class _FieldDef(NamedTuple):
                 f"Can't format destination gcs uri for {self.key_name!r}: {format}"
             )
 
-        # remove [ or ] in GCS URI because gsutils treats brackets as a character set
-        # and matches multiple file paths, which is not allowed for a target
-        gs_key = gs_key.replace("[", "").replace("]", "")
-
         # if no . in the GCS URI, don't check file extension as none specified
         if "." in self.gcs_uri_format:
             expected_extension = get_file_ext(gs_key)

cidc_schemas/unprism.py

@@ -72,10 +72,10 @@ def derive_files(context: DeriveFilesContext) -> Optional[DeriveFilesResult]:
             trial_metadata: dict
 
         None if context.upload_type does not have a defined file derivation
-        all prism.SUPPORTED_SHIPPING_MANIFESTS are supported via _shipping_manifest_derivation()
+        all prism.SUPPORTED_MANIFESTS are supported via _shipping_manifest_derivation()
         otherwise use wrapper @_register_derivation(upload_type: str)
     """
-    if context.upload_type in prism.SUPPORTED_SHIPPING_MANIFESTS:
+    if context.upload_type in prism.SUPPORTED_MANIFESTS:
         return _shipping_manifest_derivation(context)
 
     if context.upload_type in _upload_type_derivations:
@@ -353,7 +353,7 @@ def _cytof_analysis_derivation(context: DeriveFilesContext) -> DeriveFilesResult
             # and a single row of cell count data.
             df = df.set_index("CellSubset")
             df = df.drop(
-                columns="Unnamed: 0", axis=1
+                columns=["Unnamed: 0"]
             )  # Cell counts files contain an unnamed index column
             df = df.transpose()
 

{nci_cidc_schemas-0.28.7.dist-info → nci_cidc_schemas-0.28.13.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: nci_cidc_schemas
-Version: 0.28.7
+Version: 0.28.13
 Summary: The CIDC data model and tools for working with it.
 Home-page: https://github.com/NCI-CIDC/cidc-schemas
 Author: NCI
@@ -15,17 +15,17 @@ Classifier: Programming Language :: Python :: 3.13
 Requires-Python: >=3.13,<3.14
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: argparse==1.4.0
-Requires-Dist: dateparser==1.2.2
-Requires-Dist: deepdiff==8.6.1
-Requires-Dist: jinja2==3.1.6
-Requires-Dist: jsonmerge==1.6.1
-Requires-Dist: jsonpointer==3.0.0
-Requires-Dist: jsonschema==3.2.0
-Requires-Dist: openpyxl==3.1.5
-Requires-Dist: pandas==2.3.3
-Requires-Dist: pyyaml==6.0.3
-Requires-Dist: xlsxwriter==3.2.9
+Requires-Dist: argparse~=1.4.0
+Requires-Dist: dateparser~=1.2.2
+Requires-Dist: deepdiff~=8.6.1
+Requires-Dist: jinja2~=3.1.6
+Requires-Dist: jsonmerge~=1.6.1
+Requires-Dist: jsonpointer~=3.0.0
+Requires-Dist: jsonschema~=3.2.0
+Requires-Dist: openpyxl~=3.1.5
+Requires-Dist: pandas~=3.0.0
+Requires-Dist: pyyaml~=6.0.3
+Requires-Dist: xlsxwriter~=3.2.9
 Dynamic: author
 Dynamic: author-email
 Dynamic: classifier

{nci_cidc_schemas-0.28.7.dist-info → nci_cidc_schemas-0.28.13.dist-info}/RECORD

@@ -1,15 +1,15 @@
-cidc_schemas/__init__.py,sha256=9C5Ph5cCrnI8C3UFQmq8ZMnwVerq-KLkqgbkgR6vysU,135
+cidc_schemas/__init__.py,sha256=YdqRFinwGuHZdtnuw1tkZ2CVCXUj3NT07RuIv632q3s,136
 cidc_schemas/cli.py,sha256=gWiktRlraNH8Q0zNUae9dohKjPwBmcY0BJwdcQ_fIic,4099
 cidc_schemas/constants.py,sha256=RULs7pGuBAVq1teXymrfbVsK23ZowJvLuZlv0KcjL-Y,698
 cidc_schemas/json_validation.py,sha256=4UxcYrofXlDT-Lz6uiQGO1Jwz5bRs0mN_UH4p_A84ks,23262
 cidc_schemas/migrations.py,sha256=Amg_T4cFgMzySD7yNnT_PWpqP7hwlTWGeHlI_RSXuRI,14766
-cidc_schemas/template.py,sha256=BIGguKwCtyi8wwi0xpfJ6Mj4gf--1cCVybsPxpNObfs,51414
+cidc_schemas/template.py,sha256=lEIfJ1WfGcmbWR1PI8PgdSVx_Foy6Ykwyt9h3PiT4Jw,51192
 cidc_schemas/template_reader.py,sha256=3E9acCr_3TP-PP2qXNyxAnIg1m4TJ6v8VVPogUKW5qA,13126
 cidc_schemas/template_writer.py,sha256=Lk5hw05owoLLsGXimd2H8FSyqBZ2_HpC5wCWw-Xxm5w,18243
-cidc_schemas/unprism.py,sha256=TOD3CSGkgNnTtT-OeCCE3Ihlam84lr8XGOmtdSy2lL8,13545
+cidc_schemas/unprism.py,sha256=gsJjDr3ahU8ecpMUEAdspBohqwDKL6Jz0huzQfbCuPY,13521
 cidc_schemas/util.py,sha256=P-889E64I3i9iroxw5qORguzr09Ac7tsgzsoGeGsfwM,4716
 cidc_schemas/metaschema/strict_meta_schema.json,sha256=3FiS0r2dAXgfPsruJwZYbQoQnHhC_yl-3mclX8gfiQU,6428
-cidc_schemas/ngs_pipeline_api/__init__.py,sha256=Z_ZBeaNmnc-AKW1dnuT8vFN6Re3YcKne6kjE00xvHds,867
+cidc_schemas/ngs_pipeline_api/__init__.py,sha256=auXSsh33BHbV4THQAw4HitLCOye98eTD0yCifa5Ufig,866
 cidc_schemas/ngs_pipeline_api/output_API.schema.json,sha256=jqEcIpBRDy6r9TPgnRMSRX_UyZ-5bSfST46B-6eo67c,1453
 cidc_schemas/ngs_pipeline_api/atacseq/atacseq.md,sha256=AM6C54du9dTsn4mZP_j0Z_OOjoeQnAmFMiTSjV-vto4,3884
 cidc_schemas/ngs_pipeline_api/atacseq/atacseq_output_API.json,sha256=23XiUq-G_w608yl6-IV3kiYveAGWe5UjHbGcGfqSmuM,2186
@@ -23,22 +23,22 @@ cidc_schemas/ngs_pipeline_api/tcr/imgs/TCRseq.png,sha256=62Ks2ccWqUgwVeJ1C3Mu-OU
 cidc_schemas/ngs_pipeline_api/wes/wes.md,sha256=UYiHYmccCrrtAdZoyqofTWzYc027EF2rHyRksZBroyI,3830
 cidc_schemas/ngs_pipeline_api/wes/wes_config.schema.json,sha256=assQdV2ts4YPwPcKreQf12Kv1DbFhdG5Oals6li-Vz0,2530
 cidc_schemas/ngs_pipeline_api/wes/wes_output_API.json,sha256=W-KGExZvLhxJx-ubbV5MLIzYNXefFzaEo5waWXHONx4,28898
-cidc_schemas/ngs_pipeline_api/wes/wes_output_API.py,sha256=osdqm1OVBhArItFCXpsVRLKnuTGtheCAk9QQQbl2n7c,31065
+cidc_schemas/ngs_pipeline_api/wes/wes_output_API.py,sha256=N0H0K5R2vgMAaUnPs3G7PHuj8AV2kCBgf1dfGYPkHpI,31063
 cidc_schemas/ngs_pipeline_api/wes/wes_tumor_only_output_API.json,sha256=BxRIHrhuL-eeCRpmOrkCPsTNLZPjDATA5G6PY9_TCXQ,12173
 cidc_schemas/ngs_pipeline_api/wes/imgs/wes.png,sha256=QQPDqTUSOgaS6s0bLu2g2y_WQgVoujtwDTF9z5xZKCE,403116
 cidc_schemas/pipeline_configs/rna_level1_analysis_config.yaml.j2,sha256=6no9sFqwzb1T61RZGD-owDt2K5R8G_fPTzflV4fOroo,2832
 cidc_schemas/prism/__init__.py,sha256=J5Tj0X7Di6cyxAjaduOUp2aVyvl8UI67bgxEkgttvcU,530
-cidc_schemas/prism/constants.py,sha256=LgI5dinpbXqZzPS19d_CaZgmYHbuIVmh1a1FssZ2X5c,4172
+cidc_schemas/prism/constants.py,sha256=gAEvY227Ji-hT7Dmw8Vwn8yyHrxnqkyffLpV8UO426w,4076
 cidc_schemas/prism/core.py,sha256=tXDCCHurvcrxfU11meH3NRAVo9niklup0dpLRoIXwPk,20242
 cidc_schemas/prism/extra_metadata.py,sha256=2qs2PCvWRknZk56GrnRCjQ2hifAQz2YcJ8qXeMlG-Zg,8769
 cidc_schemas/prism/merger.py,sha256=36CKBPVoWecHuvGp3oT9a2d4jWIkvKuS_UofKTEpMYs,13065
-cidc_schemas/prism/pipelines.py,sha256=dvZtoC7pEVgdPual_DZUTBFfgvSV7yTdk1RHwi5h6Vs,33522
+cidc_schemas/prism/pipelines.py,sha256=r3mqpNwfvdXdgY6f96bW4o59fIO2sWqEmyX04MbidNQ,32362
 cidc_schemas/schemas/aliquot.json,sha256=F24s6xGTeJl-VT6s6wvV8YtMA4O-0BsUCwtD2OEx_cY,1943
-cidc_schemas/schemas/clinical_data.json,sha256=ubt2dqTLCbDuxuOXrBObT_xLHVSArMBx4oASFOAYEas,1474
+cidc_schemas/schemas/clinical_data.json,sha256=bHfjRMS5Ti2ctrKrjmG6YtmtZh197wdELFagOriLRdg,1746
 cidc_schemas/schemas/clinical_trial.json,sha256=aUjYgdtlRWDfULk0-apralt4-KrtjriUqt3qNTdL2Rc,4442
 cidc_schemas/schemas/participant.json,sha256=X72GQSdLqhZl_Vg8OHPqRotblIluNSmiw8N5UeM-di8,2843
 cidc_schemas/schemas/sample.json,sha256=pZeMT-Mn_Y8Lq12Ozl72bvxBnh-hiFUegWhopRxMIbQ,22223
-cidc_schemas/schemas/shipping_core.json,sha256=IRgoX7cQKCBn6EmJSetNCYBMpqmdqk7t2WRYiwgRXiw,4642
+cidc_schemas/schemas/shipping_core.json,sha256=sxMK7T73sfBfyZBn7KaR-hEXEa6ZYf0eBku-Uejr8P0,4660
 cidc_schemas/schemas/artifacts/artifact_bam.json,sha256=nPy3qx07--arLyb9VgfdVK6OJoMPhr6rnp-3AF6o82Q,1653
 cidc_schemas/schemas/artifacts/artifact_bam_bai.json,sha256=S1LxCZVyN3v-Hxhs7TEDbGcV-y7LVdAoLzGblT9IhEk,1671
 cidc_schemas/schemas/artifacts/artifact_bed.json,sha256=nGPKiAd2GQGJ6JkdLaqZhfOuyDmsAdUqril1Yao2qmE,1653
@@ -71,6 +71,7 @@ cidc_schemas/schemas/artifacts/artifact_narrowPeak.json,sha256=EOGIAmpo46qZdSzZj
 cidc_schemas/schemas/artifacts/artifact_npx.json,sha256=I0o8C9ilOrbLBmLpTOQ1ARFyQHyaSd321mPjuJMGUUw,2134
 cidc_schemas/schemas/artifacts/artifact_ome_tiff.json,sha256=wSIQPf2mi00BwikFlz8qL3wmVvtYWhuOxrHLc3ngzS0,1673
 cidc_schemas/schemas/artifacts/artifact_out.json,sha256=hgFfI9up7dYoQ33XpyILZgffL2H1dp-vi-F-Nx--SqU,1653
+cidc_schemas/schemas/artifacts/artifact_parquet.json,sha256=hPiHjJeepq3IXR8mXXGGQNyWX312UanuOo46-lC6bNg,1669
 cidc_schemas/schemas/artifacts/artifact_pdf.json,sha256=t-RR4gftGD-wjB7t40lb1TbnKLosPQCDyP-SL1V5dWc,1674
 cidc_schemas/schemas/artifacts/artifact_png.json,sha256=cGzHZQg3qbungIkxvLh6TY8iqKjtutBU2XmBnRyiijQ,1653
 cidc_schemas/schemas/artifacts/artifact_rcc.json,sha256=IyqqsxPdFZjRoFuBpnkBKBLbc-SoWvrQoqFWeNLU_as,1704
@@ -88,37 +89,39 @@ cidc_schemas/schemas/artifacts/artifact_vcf_gz.json,sha256=R37aMZQCorDCqEJQBVB6f
 cidc_schemas/schemas/artifacts/artifact_xlsx.json,sha256=PmQ3NY_8ywS3iFa4vvLzcXbewdY41jxa6isnPrWfWUQ,1659
 cidc_schemas/schemas/artifacts/artifact_yaml.json,sha256=Eey5T68k4jXqiFXfgWTVi3ZoiY5EZxc75rWCEvaZscE,1657
 cidc_schemas/schemas/artifacts/artifact_zip.json,sha256=L9TyKfKm2j0jUo7ED7Lb43Z6VRHP7hEirC349viEBhQ,1653
-cidc_schemas/schemas/assays/atacseq_assay.json,sha256=5ezVeJmrwOWuXLtf9-gH8iYKhLCys9Ii2VamezNI_hM,2547
-cidc_schemas/schemas/assays/ctdna_assay.json,sha256=NjsS0htltMIN_sGoissbnkCZCQIbNdNF1YNfWAU_Unk,3421
-cidc_schemas/schemas/assays/cytof_assay.json,sha256=rf0vebcoHY_dS4wlqkoBY9rclSAE3CRdxeGLXAbhScM,3659
-cidc_schemas/schemas/assays/cytof_assay_core.json,sha256=Vwg3RmEEdCpZtDDaVAWBDCKTMnSxagsdqSJq4AiDu9w,8828
-cidc_schemas/schemas/assays/elisa_assay.json,sha256=YHeoxYmgdpefLWkBXNg60JUig2Ccqg8thWZ5M5q3hyw,2233
-cidc_schemas/schemas/assays/hande_assay.json,sha256=8UYxKtDUKgBMH76UjokYNll0nmK_UAUd8wvsSClxbFc,3510
-cidc_schemas/schemas/assays/ihc_assay.json,sha256=g1WuTUrN6M3mmQL7TCURsKL442An8jlmXaxddg2Ayak,6738
-cidc_schemas/schemas/assays/maldi_glycan_assay.json,sha256=P8ejh4UiLk0Z8nKJm_cwovdtkLc2hV4OcPolFRlFfUc,2218
-cidc_schemas/schemas/assays/mibi_assay.json,sha256=0DnK6Tl_DZbzKuLcleaBYMW19OBpI3ociSqqeK0bG04,2164
-cidc_schemas/schemas/assays/microbiome_assay.json,sha256=4eSEKRylf86yLV7QKCIlMzzjj_XHKMfQpA0njLHBs00,2078
-cidc_schemas/schemas/assays/mif_assay.json,sha256=IG-s80kl8PUUi4U6FGmJbziG0nJf5Or_WTzfb5d46uQ,2599
-cidc_schemas/schemas/assays/mihc_assay.json,sha256=OgcklPvtUoCB-Gdvg4DF9fHFI15h9oalGW9lB4SL4xc,3104
-cidc_schemas/schemas/assays/misc_data.json,sha256=R6q-B8E-fIihlDNbe34gy7_aQeU1eIL9R_Yolg8SotU,2005
-cidc_schemas/schemas/assays/nanostring_assay.json,sha256=XAL6n80sxaAwUcNrx-pgA_YC5tyOlJrHOi8ID2vnFBo,2599
-cidc_schemas/schemas/assays/nulisa_assay.json,sha256=CMiAr-TsqRB6R6UcfWjjMrilN9vAQNSBcnv-vo3gPfk,2004
-cidc_schemas/schemas/assays/olink_assay.json,sha256=kQrUPjDKLKYyWpXoauiNDa0FANxPH_1bOfHeQEY-qAQ,5193
-cidc_schemas/schemas/assays/rna_assay-v0.json,sha256=skNGXbVVDY-6RpPosTHweQYtLntvo0bAiXcOxVSeh1s,3043
+cidc_schemas/schemas/assays/atacseq_assay.json,sha256=1RWHVQQL9ibZGOHaN_BjZn7BXM0Nwc3HMc0fP5RLDYc,2703
+cidc_schemas/schemas/assays/ctdna_assay.json,sha256=22OrrpLM6mxTSomDDM4-WDImiZ9ByT-YIR5Th7DIvZ8,3577
+cidc_schemas/schemas/assays/cytof_assay.json,sha256=5Gu2i633WePb-3dsgLZ9-lllYtcSof00FESS2_ctWxQ,3821
+cidc_schemas/schemas/assays/cytof_assay_core.json,sha256=9YzIG84pGSHC22MWHCjWY0vR6JOu1cys0OSLMbqgQN4,8990
+cidc_schemas/schemas/assays/elisa_assay.json,sha256=PxlnMsUOvg8E-c7NEV44TSlcQnvOs7-eDXSCzkXDfEw,2369
+cidc_schemas/schemas/assays/hande_assay.json,sha256=57pSnJ6iOrvAGL6LUXkOw_F33QxVfEEY4Xm9N0DS2_w,3809
+cidc_schemas/schemas/assays/ihc_assay.json,sha256=J6BV5NVlH4GpHIJaHiW7PO_-lJnTX6DshPDpDrJQZ2k,7056
+cidc_schemas/schemas/assays/maldi_glycan_assay.json,sha256=CSpIUHiHUPxv4M_sZXCyqeUDTytqCLpOzv8cgzCKbnQ,2380
+cidc_schemas/schemas/assays/mibi_assay.json,sha256=PQn7ua5KmBAiBSx-imQLWJq9oqZHpu0LH4wJSUSQmw8,2326
+cidc_schemas/schemas/assays/microbiome_assay.json,sha256=kkZ7c0gkVQJ0g8VOpc--rEc7BW9Tk2YYv9Uf8KhbI_M,2221
+cidc_schemas/schemas/assays/mif_assay.json,sha256=HS1b2wF0CkHCE-5HGfI9DTE8AuHOkRATxdA3STXKr8A,2878
+cidc_schemas/schemas/assays/mihc_assay.json,sha256=bbux1Twvqag3vOhx-6IuIRwG2r_eVwzTbp-D-h-W3uk,3265
+cidc_schemas/schemas/assays/misc_data.json,sha256=hPVS2iSGtxJlU1qg6fYWkOZcEo9gEJK1m0oGEtX_g88,2313
+cidc_schemas/schemas/assays/nanostring_assay.json,sha256=LFVnmzWM0vRgpIY4e6VrW_cLaA69KBREM-AqH1PEa5U,2753
+cidc_schemas/schemas/assays/nulisa_assay.json,sha256=xBeyYWAt73Mis593fgfe92w59Kj1sVQ5lrj661JCniI,2166
+cidc_schemas/schemas/assays/olink_assay.json,sha256=zq4R_cAsF_P4vEx6VTqNLnLKN_ZD0f0-CbFm3Jsnuyk,5351
+cidc_schemas/schemas/assays/olink_ht_assay.json,sha256=8uyboelbvHUz48HdQ7JXulFvQEOwQuX8NxV4mZhSp3k,3646
+cidc_schemas/schemas/assays/rna_assay-v0.json,sha256=XGkBvWbtMeM5006YxivQPWXyF8U3W3AUp22TSiTwmu8,3326
 cidc_schemas/schemas/assays/rna_assay.json,sha256=Gh47rRWYJSUIoLK3vvOb8_kFXhlISScrtA7nWasoBZI,409
-cidc_schemas/schemas/assays/scrnaseq_analysis.json,sha256=SasSpvclv1lllqLbym1zyyoTJJJxvvJ7CL-rDmfhlqI,4495
-cidc_schemas/schemas/assays/scrnaseq_assay.json,sha256=zZSt1AsP5l8DkObi5tsD3oSh1s1aRwr5xUmTRYOLbeQ,2657
-cidc_schemas/schemas/assays/tcr_analysis.json,sha256=Sj8a4A3NpKl4PVu69_3Q0pAsRvIlgT7ltbIFHB7bHZQ,2380
-cidc_schemas/schemas/assays/tcr_assay.json,sha256=lQm_f-3UUT_nqctc4ARjYNPKjpDfmfGzUkgRJf4m36k,4691
-cidc_schemas/schemas/assays/visium_analysis.json,sha256=5WDhZy26OuAB3z8OlT19k_vMDlopj9t6S6dcEyhZ50Q,2032
-cidc_schemas/schemas/assays/visium_assay.json,sha256=iSVYjVLougLaT9YUwpPD3j2NviTRw9F6b-YshLzBRUg,2396
-cidc_schemas/schemas/assays/wes_analysis.json,sha256=4RAnkqtCj5-txc189KmwNHJaxjrtIUIbpihFrAJFeIw,2771
-cidc_schemas/schemas/assays/wes_assay.json,sha256=vk9iK8FOiT3wU_RF3PXDV6IJqvNRbteebYGF8EfalfY,3776
+cidc_schemas/schemas/assays/scrnaseq_analysis.json,sha256=bxycjtqdBs1GRhPyAKZA5TqoyH7YQlJsQ5haEJ7-Yhw,4657
+cidc_schemas/schemas/assays/scrnaseq_assay.json,sha256=vZiASgA3jm1CviAxFCiAjUR38Uh2S24ShFBY2p2pYgY,2819
+cidc_schemas/schemas/assays/tcr_analysis.json,sha256=e-V7-CQkTmp8UCa21MJuzem3xzk3iyzcTOrCXZYQRyk,2538
+cidc_schemas/schemas/assays/tcr_assay.json,sha256=UNZ6KLoLNWQcDKJZ12AMsO7gt2PEpLeRi3BNYEnD0tk,4837
+cidc_schemas/schemas/assays/tcrseq_rna_assay.json,sha256=St1cOLS6GUfqOdSyivANhX_fpUF4nzHbiGl_oLX0_z0,2287
+cidc_schemas/schemas/assays/visium_analysis.json,sha256=sfxOVe4fPLfxBvqn7UfMm_uhXFxrzMDCIO-JFPskxMo,2194
+cidc_schemas/schemas/assays/visium_assay.json,sha256=_iEaVZHrwo6YAF6o34Ngy1XHs5UODA_eIGlAlu0BNCs,2558
+cidc_schemas/schemas/assays/wes_analysis.json,sha256=y1ET1NjL5ofPXRuwYmNzUhOKPhB4Nq__ypOTCX4G6xI,3048
+cidc_schemas/schemas/assays/wes_assay.json,sha256=1xyeNASbxy84JwzDOcPO2QaYYxqEnLygAbR0If8fJTE,4297
 cidc_schemas/schemas/assays/wes_core.json,sha256=dwAe2Hi-K5G0rm_icSbFUEIhDNG7HkESYKEGhV9L7wM,12858
-cidc_schemas/schemas/assays/wes_tumor_only_analysis.json,sha256=dU3oaeBbPnEv2Xjym7ikWr5ywwolnVbWDu1Weq2m8Wg,2018
+cidc_schemas/schemas/assays/wes_tumor_only_analysis.json,sha256=uwLuc_PjNwBuC0oQupz6IfFMQXE52dFJlg7ThMtwVX4,2295
 cidc_schemas/schemas/assays/components/antibody.json,sha256=vfLxXkXIcaJ1BXeUjCaJehrRCdVrBW3gxibwrD7zzd4,960
 cidc_schemas/schemas/assays/components/assay_core.json,sha256=QGuLiArVb7lEF2t1Ml4Qt7g4SXY58WuGBPFVgvOLI5w,485
-cidc_schemas/schemas/assays/components/available_assays.json,sha256=MhV3oM5Yz6kUPfm9nI-mRdgT0BPKwExoSe6VUVFpoLw,4794
+cidc_schemas/schemas/assays/components/available_assays.json,sha256=2QzIo0ErCRPoQMhXwKW1PReIw42HnUTWXqBqO-X2hf8,5298
 cidc_schemas/schemas/assays/components/available_ngs_analyses.json,sha256=Y_CL6A5hg4w57En9q1TsLH5ZBdlFeEpE6ggb3-dIIDk,1732
 cidc_schemas/schemas/assays/components/composite_image.json,sha256=k9EaBG3y9j-lvg3nQNZbfVpo9fK_gUz1-9iTwjlTDfE,733
 cidc_schemas/schemas/assays/components/controls.json,sha256=_Wxz7W2msTGJ2Ei4XZg0Qy1t8A5_rLSHNvdPurC073E,458
@@ -135,7 +138,7 @@ cidc_schemas/schemas/assays/components/mif_antibody.json,sha256=zzSI5fu9Lema80fY
 cidc_schemas/schemas/assays/components/mihc_antibody.json,sha256=h9suQ0kgGIDV3U3IxUsVjMt8Y00ao8xqmI8Un3UgDYQ,2144
 cidc_schemas/schemas/assays/components/mihc_input.json,sha256=KozUg3J_0PgQm3b5EEmh1Oh0hdiMS1u9V1zu8_2hsRQ,803
 cidc_schemas/schemas/assays/components/multiple_local_files.json,sha256=VVG6Yvz9yEchgFO9FHQLm7nwM_BcPMjYIecWMnRKp00,480
-cidc_schemas/schemas/assays/components/ngs_assay_core.json,sha256=jqJbrnSPZV6pmJLM6J9YAxniwqGJ_pkTLak_m9zG3nY,1229
+cidc_schemas/schemas/assays/components/ngs_assay_core.json,sha256=YqA7eWs7HJZC21tvimresltBPrOoH8dzPLGYtsKliZk,1258
 cidc_schemas/schemas/assays/components/ngs_assay_record.json,sha256=DwHKyRNDQ6h8PUz0KdBfmcd0Pz1Q1rOeqWpKfUIwjZM,615
 cidc_schemas/schemas/assays/components/nulisa_input.json,sha256=Wu_Vx2TfwBXSaB9e9ngA7FJpcqycxwaFeyxJzosYS54,1271
 cidc_schemas/schemas/assays/components/reads_core.json,sha256=p5RWN2TEGefenpz6pZlOG6MZ6tTAviKUx1bLCZtsNLk,1139
@@ -150,49 +153,51 @@ cidc_schemas/schemas/assays/components/imaging/mif_input.json,sha256=Hf1PKkk6pHR
 cidc_schemas/schemas/assays/components/imaging/mif_roi.json,sha256=XL80pl3_5xj40Y4fpE0THDjCDNYojtxDpjtatoFcNAA,1112
 cidc_schemas/schemas/assays/components/mibi_imaging/mibi_input.json,sha256=JvigxrK5namtAjUHvBm6QVBZWePVLXWTNaORoUH_aBA,1522
 cidc_schemas/schemas/assays/components/ngs/ngs_assay_record.json,sha256=DwHKyRNDQ6h8PUz0KdBfmcd0Pz1Q1rOeqWpKfUIwjZM,615
-cidc_schemas/schemas/assays/components/ngs/atacseq/atacseq_analysis.json,sha256=kDhS8GHGLF05v4427J6E73J6MiOh0R8Lh6RHrSD5Ak0,2283
+cidc_schemas/schemas/assays/components/ngs/atacseq/atacseq_analysis.json,sha256=QmGeXbc9HvUAvVrRvYnFgOj8apXYtsGNhPkpcVsjGpI,2445
 cidc_schemas/schemas/assays/components/ngs/rna/fusion.json,sha256=lgGWX9unADhT4xNDGqQD_VbC6cUo1JMgH9Ii7ZBvofQ,392
 cidc_schemas/schemas/assays/components/ngs/rna/microbiome.json,sha256=HWm3bOL-y28tV2tYyagEdhUswhVGtk3KEuoy9TZiS3Y,395
 cidc_schemas/schemas/assays/components/ngs/rna/msisensor.json,sha256=wwp_fgHUWofgaqZ3V_MMup7ApR1jsVxw6rXFVg6-_A0,398
 cidc_schemas/schemas/assays/components/ngs/rna/neoantigen.json,sha256=Lbh2ClgtttpcsNz2Zayr2SVNEZw-bPp-lG5Jkg9NlWQ,385
-cidc_schemas/schemas/assays/components/ngs/rna/rna_analysis.json,sha256=nLe3ZnfOoani5ElTjihvvYxZIbx9W9LPqOJXX5uX1Qk,605
+cidc_schemas/schemas/assays/components/ngs/rna/rna_analysis.json,sha256=XLQpPX9YEZBCC82U3v2PYyseS_v88RnhWOtCWh3kpTY,901
 cidc_schemas/schemas/assays/components/ngs/rna/rna_level1_analysis.json,sha256=Rw1fKEpepV9chtsBF8RMHtL8s0nqTaa8P7sBFt1qBYg,1432
 cidc_schemas/schemas/assays/components/ngs/rna/rseqc.json,sha256=Aq2Ytg8xw9hrzSCHDL3DAWpFcNWD4uDHyjPd6lGYf-0,541
 cidc_schemas/schemas/assays/components/ngs/rna/salmon.json,sha256=GRJaC4MhupuRrEffBxb5q-3QVO32CS5e9S9Bd7MMP5I,1375
 cidc_schemas/schemas/assays/components/ngs/rna/star.json,sha256=XoL1Ro8YDr-ZQQOmYZC8NnREDW-7qzR6IzJi3tLQ2ks,772
 cidc_schemas/schemas/assays/components/ngs/rna/trust4.json,sha256=o-fxkTL-1Tho1kPkJ6CcMUp5kE5mnkZU8cdSCzHR5cQ,382
-cidc_schemas/schemas/templates/analyses/atacseq_analysis_template.json,sha256=7vBdwVD6HEd9Pj8AkEoa34fQjIynztsNaKvfn2KoFFc,5403
-cidc_schemas/schemas/templates/analyses/cytof_analysis_template.json,sha256=d6qOGbYXXx1c8rb-saM4D_tMuK8n4ydbyW9_xaW6xhk,6381
-cidc_schemas/schemas/templates/analyses/rna_level1_analysis_template.json,sha256=vMHXSQNZz8sFxwiBUnRXb5o08GxgbKZjMu8ZPjNn4TI,15944
-cidc_schemas/schemas/templates/analyses/scrnaseq_analysis_template.json,sha256=_eBhwRmw3g_Cd6ye9E2ZQkm9WntYF1iX5EmSIyJ63bA,12868
-cidc_schemas/schemas/templates/analyses/tcr_analysis_template.json,sha256=ai5KUp6q5GGTxDybOHBaseOnvQCVqIRh4SurETz5Vx0,3054
-cidc_schemas/schemas/templates/analyses/visium_analysis_template.json,sha256=zF_VLfR-kLuXxsAUQpj_dDTNwkq_tlrh4spovD_OQ4I,4438
-cidc_schemas/schemas/templates/analyses/wes_analysis_template.json,sha256=kvnbC6nYrwqfGKfvHwZs1d4rePW_BOLzV6oRvrMkiD4,35297
-cidc_schemas/schemas/templates/analyses/wes_tumor_only_analysis_template.json,sha256=hhWA6mBPVBIM9QFg0C7CkimD9fcFXXtFSSkvo0lvnro,16264
-cidc_schemas/schemas/templates/assays/atacseq_fastq_template.json,sha256=7WygawkxnhFu5xBAuIhSOBD8TwCqDgINjC-HIYeCf4Q,3928
-cidc_schemas/schemas/templates/assays/clinical_data_template.json,sha256=1luQXzyqbAKKiNVwVQFeZ4dwzVpnTeGAropzd_mYmx4,2193
-cidc_schemas/schemas/templates/assays/ctdna_template.json,sha256=KDyOPbBh0dytlZRJVKNuaGEB8MAyq6Ls1CvI8d2wF3o,6151
-cidc_schemas/schemas/templates/assays/cytof_template.json,sha256=YGaLt7DKsz32o3na8NDs-bXteVnAPMiF1hLH643f6kY,13328
-cidc_schemas/schemas/templates/assays/elisa_template.json,sha256=Q8cv5ZpaRZUfvr6e4PC4uvMqhhaDGLdvVMN_s8Uiajw,2259
-cidc_schemas/schemas/templates/assays/hande_template.json,sha256=fPe4V95aQyzggihs72K8HAQTdb-aqrRj90sejQkwjSY,4415
-cidc_schemas/schemas/templates/assays/ihc_template.json,sha256=lOSP6v24FMk-WN7Za4IYQkM94R-1TEvrnllRopEEYa4,7341
-cidc_schemas/schemas/templates/assays/maldi_glycan_template.json,sha256=1-QChZx5y3W3EtSL6jFYBOSiZL79ogbF_KlDUQU6-Xk,7338
-cidc_schemas/schemas/templates/assays/mibi_template.json,sha256=X9S8ZWRj0PLYgtTwodC36Fx7D6UQFCWpbx2AVQuHfbM,7787
-cidc_schemas/schemas/templates/assays/microbiome_template.json,sha256=2qaTB8W-tG6NhbSJ3KAEIacp1E4g-cFBGMOMc5zTafo,3578
-cidc_schemas/schemas/templates/assays/mif_template.json,sha256=ozyMdziNxtAReTL7guFIwTiJGhEWam9Hsb_fOhIYXIY,19272
-cidc_schemas/schemas/templates/assays/mihc_template.json,sha256=BvlRCTC3R6Z6QCzqR0sH_lKuSjsd-69HWhT236aAuQQ,10974
-cidc_schemas/schemas/templates/assays/misc_data_template.json,sha256=88GBWq7hrALrYmmgfqStrhocNtPWWYOMeUk9i8_uFRg,1896
-cidc_schemas/schemas/templates/assays/nanostring_template.json,sha256=XFbf72EHNspsOUD014WDYjMSmIEz4LpCaY3iP3im2KQ,3214
-cidc_schemas/schemas/templates/assays/nulisa_template.json,sha256=usOvwb-6nCGv31vblQgnrv7bnsxZvRmxcHdtFF9sWY8,3749
-cidc_schemas/schemas/templates/assays/olink_template.json,sha256=3YqkeVF9PnXUeETkf0RfEB14jprNPMWWwY4GTALfuWY,6335
-cidc_schemas/schemas/templates/assays/rna_bam_template.json,sha256=l2OLgb8hx3fAupUvdWWtn_QbOiyicYE2u4diVz7C5cg,3084
-cidc_schemas/schemas/templates/assays/rna_fastq_template.json,sha256=ZSKfzQ38SkpeKTK-xT9YAz0tRafCjo-IUZsr8GBYLOM,3344
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-cidc_schemas/schemas/templates/assays/tcr_adaptive_template.json,sha256=Hb8ngxw6XHjIqtA9W1eLfO3ciH18VfRTKOQvipX14Dg,3269
-cidc_schemas/schemas/templates/assays/tcr_fastq_template.json,sha256=7Qq4ssI8ErDrHy5RIxjPcNiDf2IBHG42JcngDFKxqlE,3457
-cidc_schemas/schemas/templates/assays/visium_template.json,sha256=H_UhJBGxPyGWq4HSPsn4SpKMmb3xTC1e5DMz3XlXAu4,7898
-cidc_schemas/schemas/templates/assays/wes_bam_template.json,sha256=nxbb_lNPi-5cdAlwmSBvn7cS_8gMjROOz7wBWk6ev0Y,2724
-cidc_schemas/schemas/templates/assays/wes_fastq_template.json,sha256=vuwuIpqXyqpGxCunpjbHKaBQhfKFnr2R-wMkXDiJdKM,3143
+cidc_schemas/schemas/templates/analyses/atacseq_analysis_template.json,sha256=5kUruoFlYK-VA5arko-cQ9jN7BH_wx0cT8pAUp67f74,5622
+cidc_schemas/schemas/templates/analyses/cytof_analysis_template.json,sha256=JRos9LRB2dLAPdJlVwGWD3moceIjYKjdSAK9oKgu5dM,6663
+cidc_schemas/schemas/templates/analyses/rna_level1_analysis_template.json,sha256=p8BVblC6uUc6tB4T5NQ83QDHf2cfeVMcXvFgeL5SYMU,16357
+cidc_schemas/schemas/templates/analyses/scrnaseq_analysis_template.json,sha256=4HgiBP05Wwj7fPBhydzxRRiJKX-30ckNytaAC-QjPhs,13205
+cidc_schemas/schemas/templates/analyses/tcr_analysis_template.json,sha256=jqawYgD5UpjJmShmAytgRDvg2J55iJLeFBFuL27VyEs,3248
+cidc_schemas/schemas/templates/analyses/visium_analysis_template.json,sha256=lcpRV3bdmjqu7H68bDPPp5sf8acu8g64VDAOCEaP98A,4649
+cidc_schemas/schemas/templates/analyses/wes_analysis_template.json,sha256=-ucy53AW1B9qNkom_LlyYClbfva3dZbdAgAX9Uc1ufg,35704
+cidc_schemas/schemas/templates/analyses/wes_tumor_only_analysis_template.json,sha256=j7aBUKOMeWzqL9Wboky9tKv-NgtwLdUXUQKtG7nTxRg,16671
+cidc_schemas/schemas/templates/assays/atacseq_fastq_template.json,sha256=o315vw2Gla9CK1S-moqyhuLRl72b5iT8NkT0b_GcJTI,4104
+cidc_schemas/schemas/templates/assays/clinical_data_template.json,sha256=uYHe8TCKFcyzVyZMk6kDXbtmsmYrlkjwNho5RD3wtA4,2593
+cidc_schemas/schemas/templates/assays/ctdna_template.json,sha256=9CX6yv8kV3qiDmC-YZN6DwYcrvoXH0XMPX1uA2wIV8g,6383
+cidc_schemas/schemas/templates/assays/cytof_template.json,sha256=Xryrqj0Lv6fAnYxfrTZ9toqjsmftKBuWrZ-sLNdYgx8,13568
+cidc_schemas/schemas/templates/assays/elisa_template.json,sha256=mQNgI_OXmIRcMyQrdI4h1YxUmuKsPpmMgmSsV4qs_f0,2433
+cidc_schemas/schemas/templates/assays/hande_template.json,sha256=hOZicLAYZ2nw7a2aC90gA2MOfJw8sm4C9kCn8JvdjVA,4809
+cidc_schemas/schemas/templates/assays/ihc_template.json,sha256=MznRuxoSzWeP1od4oUybovFbz7we0OGT7X82v5lmCvA,7747
+cidc_schemas/schemas/templates/assays/maldi_glycan_template.json,sha256=xtmLcBHuB7lPKYH9obqbMSR-b8rgHh8H1LVuttPJHRk,7589
+cidc_schemas/schemas/templates/assays/mibi_template.json,sha256=odESl6wynT21k2J2IGdRQRsGZ5RXj_x6DobURtjQ5aQ,8020
+cidc_schemas/schemas/templates/assays/microbiome_template.json,sha256=FbynxB_wTVQNrxzcIWmGunOsVRaBLMZ-SVb20eC2gBE,3800
+cidc_schemas/schemas/templates/assays/mif_template.json,sha256=bz4KYt9Xj3x2CE_30HX8BjNV45H-KtC_wMDaTHZPN2w,19678
+cidc_schemas/schemas/templates/assays/mihc_template.json,sha256=zY1Bale7ZvO2tjnbrCLeJ0Bs4O08TvpEbLgYrwCOC2A,11195
+cidc_schemas/schemas/templates/assays/misc_data_template.json,sha256=ijXejUzXLa0O5nNs1ciqO1O3kW7JjOk2icEDAxixv1s,2214
+cidc_schemas/schemas/templates/assays/nanostring_template.json,sha256=W8T8kdPA-Rl3OFi7VLgnHZp0Uk_F3ksaX_KmchgpYaY,3421
+cidc_schemas/schemas/templates/assays/nulisa_template.json,sha256=n2mTcVKdUjh5r5R2t1GPfOit4zwS4Y0S_y_scbFxUAA,3986
+cidc_schemas/schemas/templates/assays/olink_ht_template.json,sha256=i8DQPvZsvgKmXkbPZ1sRRuH4QqwZ2-HEkVzSZ4F31eg,4147
+cidc_schemas/schemas/templates/assays/olink_template.json,sha256=Bc6aql9MFJj1zC77o-rHLqt0lPEfyKQWgPk33hFNKkA,6511
+cidc_schemas/schemas/templates/assays/rna_bam_template.json,sha256=pJhAdZqLzxByM7BgMM3pMwwjoubHyYwN1SDy_kg44XI,3409
+cidc_schemas/schemas/templates/assays/rna_fastq_template.json,sha256=VrKY_wpWmPTZ64Uw7_bHdIkoG3XELvQkyo6INgZlIqc,3669
+cidc_schemas/schemas/templates/assays/scrnaseq_template.json,sha256=_09XxY73l5Ii8Z0pQ1RtSxwGPEs1tw3E1v589iyGrQQ,5080
+cidc_schemas/schemas/templates/assays/tcr_adaptive_template.json,sha256=GE0_r9aNzxQLRK86p3gftNj-1D0oR2_rFmjAt1Ry0jA,3463
+cidc_schemas/schemas/templates/assays/tcr_fastq_template.json,sha256=MagEMi36rkpuyV2tXdp1WIbxlbyjIVrHCYGsoBCpU88,3657
+cidc_schemas/schemas/templates/assays/tcrseq_rna_template.json,sha256=PO0ivqDF31aSSO081nKRCbGyybNcjZDj0cYUMdA52tM,2855
+cidc_schemas/schemas/templates/assays/visium_template.json,sha256=cw0f7I-Rxzu6ua9QGWIC3BWjuCc1E9zoUAKhLzxTkIA,8163
+cidc_schemas/schemas/templates/assays/wes_bam_template.json,sha256=CEoE_XY2Hf_CbSLAry7S_27jnZKliUHJ0ahOAyMjMSs,3042
+cidc_schemas/schemas/templates/assays/wes_fastq_template.json,sha256=XJSMIT7G6DpMOFBQWEtChkQID1vPISFCgKNj4bWaL8g,3461
 cidc_schemas/schemas/templates/manifests/h_and_e_template.json,sha256=8fbhWxKWhITds1KkbEdQxHHoeoKB2Tm40plzsxz3_FE,18009
 cidc_schemas/schemas/templates/manifests/microbiome_dna_template.json,sha256=POucJzR6ac_ndXgttL8Pm6s7BKtu5tqJz4Y49U8zLj0,17848
 cidc_schemas/schemas/templates/manifests/normal_blood_dna_template.json,sha256=emT2mC8vwKU4rjBNm-NMS5JYxDelDNH2YL5QESOXm-s,18980
@@ -200,12 +205,11 @@ cidc_schemas/schemas/templates/manifests/normal_tissue_dna_template.json,sha256=
 cidc_schemas/schemas/templates/manifests/pbmc_template.json,sha256=esGW9nVQ6Elgf0LeELowwpxlP7EOgSgnF6Jka0AnsPA,18778
 cidc_schemas/schemas/templates/manifests/plasma_template.json,sha256=VNraMcIdpxvPJC5SH4nnUeqOCz5HUuiGiMcKC20Ctso,16138
 cidc_schemas/schemas/templates/manifests/tissue_slide_template.json,sha256=q2GmOA2bstMRJmkigOri_uFYKJNHJG3qjVXUjV410Ls,16557
-cidc_schemas/schemas/templates/manifests/tumor_normal_pairing_template.json,sha256=lVJrGb28n-vyfjGBzhrzjn1lMKw1b4HXXmWtwA603v0,2797
 cidc_schemas/schemas/templates/manifests/tumor_tissue_dna_template.json,sha256=LpaoDXDS11NCa-Dv37N-tzEGomswQrx5fypkUcG7xJk,18956
 cidc_schemas/schemas/templates/manifests/tumor_tissue_rna_template.json,sha256=-gww6NCHbtbI5z7UmNSmKyPK3IqKCE8F6n4XwTAb_gk,18101
-nci_cidc_schemas-0.28.7.dist-info/licenses/LICENSE,sha256=zK77-w4rYCZBHAYJEGkcFuPXwKIsP7jMPZ2iQOXjzko,1072
-nci_cidc_schemas-0.28.7.dist-info/METADATA,sha256=UiNR6hNC_aCMgGb3nmMygQ5myI7prjnpxbSUAOQRZYM,5374
-nci_cidc_schemas-0.28.7.dist-info/WHEEL,sha256=JNWh1Fm1UdwIQV075glCn4MVuCRs0sotJIq-J6rbxCU,109
-nci_cidc_schemas-0.28.7.dist-info/entry_points.txt,sha256=kSyTzXeJQrJp_2ZX0GS_NnbJR8ceQKLBSgER46PM0hs,55
-nci_cidc_schemas-0.28.7.dist-info/top_level.txt,sha256=Wwb5Cu7QrnbmSJxI2d00e3-Mir36t0jTRnSulmfhi30,13
-nci_cidc_schemas-0.28.7.dist-info/RECORD,,
+nci_cidc_schemas-0.28.13.dist-info/licenses/LICENSE,sha256=zK77-w4rYCZBHAYJEGkcFuPXwKIsP7jMPZ2iQOXjzko,1072
+nci_cidc_schemas-0.28.13.dist-info/METADATA,sha256=IPHFpD4wp_VckIZSYCpg-uiUFlc0rPNapCMKox0UZrI,5375
+nci_cidc_schemas-0.28.13.dist-info/WHEEL,sha256=Mk1ST5gDzEO5il5kYREiBnzzM469m5sI8ESPl7TRhJY,110
+nci_cidc_schemas-0.28.13.dist-info/entry_points.txt,sha256=kSyTzXeJQrJp_2ZX0GS_NnbJR8ceQKLBSgER46PM0hs,55
+nci_cidc_schemas-0.28.13.dist-info/top_level.txt,sha256=Wwb5Cu7QrnbmSJxI2d00e3-Mir36t0jTRnSulmfhi30,13
+nci_cidc_schemas-0.28.13.dist-info/RECORD,,

{nci_cidc_schemas-0.28.7.dist-info → nci_cidc_schemas-0.28.13.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (80.9.0)
+Generator: setuptools (80.10.2)
 Root-Is-Purelib: true
 Tag: py2-none-any
 Tag: py3-none-any