nci-cidc-schemas 0.27.7__py2.py3-none-any.whl → 0.27.9__py2.py3-none-any.whl

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Files changed (18) hide show
  1. cidc_schemas/__init__.py +1 -1
  2. cidc_schemas/schemas/sample.json +5 -1
  3. cidc_schemas/schemas/shipping_core.json +3 -3
  4. cidc_schemas/schemas/templates/manifests/h_and_e_template.json +5 -0
  5. cidc_schemas/schemas/templates/manifests/microbiome_dna_template.json +5 -0
  6. cidc_schemas/schemas/templates/manifests/normal_blood_dna_template.json +5 -0
  7. cidc_schemas/schemas/templates/manifests/normal_tissue_dna_template.json +5 -0
  8. cidc_schemas/schemas/templates/manifests/pbmc_template.json +5 -0
  9. cidc_schemas/schemas/templates/manifests/plasma_template.json +5 -0
  10. cidc_schemas/schemas/templates/manifests/tissue_slide_template.json +5 -0
  11. cidc_schemas/schemas/templates/manifests/tumor_tissue_dna_template.json +5 -0
  12. cidc_schemas/schemas/templates/manifests/tumor_tissue_rna_template.json +5 -0
  13. {nci_cidc_schemas-0.27.7.dist-info → nci_cidc_schemas-0.27.9.dist-info}/METADATA +1 -1
  14. {nci_cidc_schemas-0.27.7.dist-info → nci_cidc_schemas-0.27.9.dist-info}/RECORD +18 -18
  15. {nci_cidc_schemas-0.27.7.dist-info → nci_cidc_schemas-0.27.9.dist-info}/WHEEL +1 -1
  16. {nci_cidc_schemas-0.27.7.dist-info → nci_cidc_schemas-0.27.9.dist-info}/entry_points.txt +0 -0
  17. {nci_cidc_schemas-0.27.7.dist-info → nci_cidc_schemas-0.27.9.dist-info}/licenses/LICENSE +0 -0
  18. {nci_cidc_schemas-0.27.7.dist-info → nci_cidc_schemas-0.27.9.dist-info}/top_level.txt +0 -0
cidc_schemas/__init__.py CHANGED
@@ -2,4 +2,4 @@
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  __author__ = """NCI"""
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  __email__ = "nci-cidc-tools-admin@mail.nih.gov"
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- __version__ = "0.27.07"
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+ __version__ = "0.27.09"
cidc_schemas/schemas/sample.json CHANGED
@@ -154,6 +154,10 @@
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  "Other"
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  ]
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  },
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+ "type_of_sample_other": {
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+ "description": "The description of the sample other.",
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+ "type": "string"
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+ },
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  "description_of_sample": {
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  "description": "The description of the sample.",
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  "type": "string",
@@ -493,7 +497,7 @@
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  "quality_of_sample": {
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  "description": "Final status of sample after QC and pathology review.",
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  "type": "string",
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- "enum": ["Pass", "Pass at Risk", "Fail"]
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+ "enum": ["QC Pass", "Pass at Risk", "QC Failed", "QC Lost", "QC Not Shipped"]
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  },
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  "sample_replacement": {
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  "description": "Indication if sample replacement is/was requested.",
cidc_schemas/schemas/shipping_core.json CHANGED
@@ -70,9 +70,9 @@
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  "description": "Type of shipment made.",
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  "type": "string",
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  "enum": [
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- "Frozen_Dry_Ice",
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- "Frozen_Shipper",
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- "Ice_Pack",
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+ "Frozen Dry Ice",
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+ "Frozen Shipper",
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+ "Ice/Cold Pack",
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  "Ambient",
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  "Not Reported",
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  "Other"
cidc_schemas/schemas/templates/manifests/h_and_e_template.json CHANGED
@@ -213,6 +213,11 @@
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  "type of sample": {
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  "merge_pointer": "/type_of_sample",
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  "type_ref": "sample.json#properties/type_of_sample"
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+ },
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+ "type of sample other": {
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+ "merge_pointer": "/type_of_sample_other",
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+ "type_ref": "sample.json#properties/type_of_sample_other",
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+ "allow_empty": true
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  },
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  "type of tumor sample": {
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  "merge_pointer": "/type_of_tumor_sample",
cidc_schemas/schemas/templates/manifests/microbiome_dna_template.json CHANGED
@@ -217,6 +217,11 @@
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  "merge_pointer": "/type_of_sample",
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  "type_ref": "sample.json#properties/type_of_sample"
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  },
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+ "type of sample other": {
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+ "merge_pointer": "/type_of_sample_other",
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+ "type_ref": "sample.json#properties/type_of_sample_other",
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+ "allow_empty": true
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+ },
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  "type of tumor sample": {
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  "merge_pointer": "/type_of_tumor_sample",
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  "type_ref": "sample.json#properties/type_of_tumor_sample"
cidc_schemas/schemas/templates/manifests/normal_blood_dna_template.json CHANGED
@@ -212,6 +212,11 @@
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  "merge_pointer": "/type_of_sample",
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  "type_ref": "sample.json#properties/type_of_sample"
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  },
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+ "type of sample other": {
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+ "merge_pointer": "/type_of_sample_other",
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+ "type_ref": "sample.json#properties/type_of_sample_other",
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+ "allow_empty": true
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+ },
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  "type of tumor sample": {
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  "merge_pointer": "/type_of_tumor_sample",
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  "type_ref": "sample.json#properties/type_of_tumor_sample"
cidc_schemas/schemas/templates/manifests/normal_tissue_dna_template.json CHANGED
@@ -220,6 +220,11 @@
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  "merge_pointer": "/type_of_sample",
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  "type_ref": "sample.json#properties/type_of_sample"
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  },
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+ "type of sample other": {
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+ "merge_pointer": "/type_of_sample_other",
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+ "type_ref": "sample.json#properties/type_of_sample_other",
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+ "allow_empty": true
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+ },
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  "sample collection procedure": {
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  "merge_pointer": "/sample_collection_procedure",
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  "type_ref": "sample.json#properties/sample_collection_procedure"
cidc_schemas/schemas/templates/manifests/pbmc_template.json CHANGED
@@ -213,6 +213,11 @@
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  "type of sample": {
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  "merge_pointer": "0/type_of_sample",
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  "type_ref": "sample.json#properties/type_of_sample"
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+ },
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+ "type of sample other": {
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+ "merge_pointer": "/type_of_sample_other",
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+ "type_ref": "sample.json#properties/type_of_sample_other",
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+ "allow_empty": true
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  },
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  "sample collection procedure": {
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  "merge_pointer": "/sample_collection_procedure",
cidc_schemas/schemas/templates/manifests/plasma_template.json CHANGED
@@ -215,6 +215,11 @@
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  "merge_pointer": "/type_of_sample",
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  "type_ref": "sample.json#properties/type_of_sample"
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  },
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+ "type of sample other": {
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+ "merge_pointer": "/type_of_sample_other",
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+ "type_ref": "sample.json#properties/type_of_sample_other",
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+ "allow_empty": true
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+ },
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  "sample collection procedure": {
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  "merge_pointer": "/sample_collection_procedure",
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  "type_ref": "sample.json#properties/sample_collection_procedure"
cidc_schemas/schemas/templates/manifests/tissue_slide_template.json CHANGED
@@ -215,6 +215,11 @@
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  "merge_pointer": "/type_of_sample",
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  "type_ref": "sample.json#properties/type_of_sample"
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  },
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+ "type of sample other": {
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+ "merge_pointer": "/type_of_sample_other",
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+ "type_ref": "sample.json#properties/type_of_sample_other",
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+ "allow_empty": true
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+ },
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  "type of tumor sample": {
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  "merge_pointer": "/type_of_tumor_sample",
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  "type_ref": "sample.json#properties/type_of_tumor_sample"
cidc_schemas/schemas/templates/manifests/tumor_tissue_dna_template.json CHANGED
@@ -215,6 +215,11 @@
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  "merge_pointer": "/type_of_sample",
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  "type_ref": "sample.json#properties/type_of_sample"
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  },
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+ "type of sample other": {
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+ "merge_pointer": "/type_of_sample_other",
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+ "type_ref": "sample.json#properties/type_of_sample_other",
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+ "allow_empty": true
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+ },
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  "type of tumor sample": {
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  "merge_pointer": "/type_of_tumor_sample",
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  "type_ref": "sample.json#properties/type_of_tumor_sample"
cidc_schemas/schemas/templates/manifests/tumor_tissue_rna_template.json CHANGED
@@ -215,6 +215,11 @@
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  "merge_pointer": "/type_of_sample",
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  "type_ref": "sample.json#properties/type_of_sample"
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  },
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+ "type of sample other": {
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+ "merge_pointer": "/type_of_sample_other",
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+ "type_ref": "sample.json#properties/type_of_sample_other",
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+ "allow_empty": true
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+ },
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  "type of tumor sample": {
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  "merge_pointer": "/type_of_tumor_sample",
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  "type_ref": "sample.json#properties/type_of_tumor_sample"
{nci_cidc_schemas-0.27.7.dist-info → nci_cidc_schemas-0.27.9.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: nci_cidc_schemas
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- Version: 0.27.7
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+ Version: 0.27.9
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  Summary: The CIDC data model and tools for working with it.
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  Home-page: https://github.com/NCI-CIDC/cidc-schemas
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  Author: NCI
{nci_cidc_schemas-0.27.7.dist-info → nci_cidc_schemas-0.27.9.dist-info}/RECORD RENAMED
@@ -1,4 +1,4 @@
1
- cidc_schemas/__init__.py,sha256=mvfYCHhm5U-KWTKUo-eKgnaUr-hEKtBAG7AzeTc-MKU,136
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+ cidc_schemas/__init__.py,sha256=MeM_c2q3soiProYuRKkz2LXkVeABgnSd8bmKvCUheOQ,136
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  cidc_schemas/cli.py,sha256=gWiktRlraNH8Q0zNUae9dohKjPwBmcY0BJwdcQ_fIic,4099
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  cidc_schemas/constants.py,sha256=RULs7pGuBAVq1teXymrfbVsK23ZowJvLuZlv0KcjL-Y,698
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  cidc_schemas/json_validation.py,sha256=nHkSfTmBN7EeTrZVdbb8h6A64lWrJe5z0AIHiIy-YB0,22552
@@ -20,8 +20,8 @@ cidc_schemas/schemas/aliquot.json,sha256=F24s6xGTeJl-VT6s6wvV8YtMA4O-0BsUCwtD2OE
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  cidc_schemas/schemas/clinical_data.json,sha256=ubt2dqTLCbDuxuOXrBObT_xLHVSArMBx4oASFOAYEas,1474
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  cidc_schemas/schemas/clinical_trial.json,sha256=aUjYgdtlRWDfULk0-apralt4-KrtjriUqt3qNTdL2Rc,4442
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  cidc_schemas/schemas/participant.json,sha256=X72GQSdLqhZl_Vg8OHPqRotblIluNSmiw8N5UeM-di8,2843
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- cidc_schemas/schemas/sample.json,sha256=8SFYwnvc3MzLblLEXMiBxn5wrwZNsPAyYjsoU-v75jo,21341
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- cidc_schemas/schemas/shipping_core.json,sha256=OGdcdoFJXoKacD_FoSukX6SXJvcgFXTnWPko9VqOD5o,4234
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+ cidc_schemas/schemas/sample.json,sha256=4WnxrgJ978CybHg3bQ2JrYgi_0ih0zHyIhr1DwPuDRc,21519
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+ cidc_schemas/schemas/shipping_core.json,sha256=poCU_gwwXSy997eqkJCBY8TswEHo7rUDIuGszcgYKK8,4239
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  cidc_schemas/schemas/artifacts/artifact_bam.json,sha256=nPy3qx07--arLyb9VgfdVK6OJoMPhr6rnp-3AF6o82Q,1653
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  cidc_schemas/schemas/artifacts/artifact_bam_bai.json,sha256=S1LxCZVyN3v-Hxhs7TEDbGcV-y7LVdAoLzGblT9IhEk,1671
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  cidc_schemas/schemas/artifacts/artifact_bed.json,sha256=nGPKiAd2GQGJ6JkdLaqZhfOuyDmsAdUqril1Yao2qmE,1653
@@ -144,19 +144,19 @@ cidc_schemas/schemas/templates/assays/tcr_adaptive_template.json,sha256=Hb8ngxw6
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  cidc_schemas/schemas/templates/assays/tcr_fastq_template.json,sha256=7Qq4ssI8ErDrHy5RIxjPcNiDf2IBHG42JcngDFKxqlE,3457
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  cidc_schemas/schemas/templates/assays/wes_bam_template.json,sha256=nxbb_lNPi-5cdAlwmSBvn7cS_8gMjROOz7wBWk6ev0Y,2724
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  cidc_schemas/schemas/templates/assays/wes_fastq_template.json,sha256=vuwuIpqXyqpGxCunpjbHKaBQhfKFnr2R-wMkXDiJdKM,3143
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- cidc_schemas/schemas/templates/manifests/h_and_e_template.json,sha256=ttdf1U9ENF1U6cn4jG6pLB0hqIVignaa8UfmyPwLuTY,17726
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- cidc_schemas/schemas/templates/manifests/microbiome_dna_template.json,sha256=VavO5lg52VEXbdXS_pqsYRwCdjjk4wQuzrgaIOlwiU8,17566
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- cidc_schemas/schemas/templates/manifests/normal_blood_dna_template.json,sha256=nmr3DCCFzpAT_SdEfSTCWIga48z4PwnoSodBbnZvNAE,18649
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- cidc_schemas/schemas/templates/manifests/normal_tissue_dna_template.json,sha256=GUtdrieD8vwoUMRs9ePzDHCrN2sbgDx81-R1K2PBzsI,18387
151
- cidc_schemas/schemas/templates/manifests/pbmc_template.json,sha256=b72ng2fU2tEYTye_Na5bsHv7dxNS9sPciIQqznhHZ7s,18241
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- cidc_schemas/schemas/templates/manifests/plasma_template.json,sha256=sQR_ayLKgxzrkjC-PC7eCmEyV6dQzQr-boZAtDBgbx8,15856
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- cidc_schemas/schemas/templates/manifests/tissue_slide_template.json,sha256=jwyXOjKnCrHzz1tDF57dYi-Z4QmYrECjSKiQ7g56XG8,16275
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+ cidc_schemas/schemas/templates/manifests/h_and_e_template.json,sha256=8fbhWxKWhITds1KkbEdQxHHoeoKB2Tm40plzsxz3_FE,18009
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+ cidc_schemas/schemas/templates/manifests/microbiome_dna_template.json,sha256=POucJzR6ac_ndXgttL8Pm6s7BKtu5tqJz4Y49U8zLj0,17848
149
+ cidc_schemas/schemas/templates/manifests/normal_blood_dna_template.json,sha256=13FceWQ4DR09N0hJgBwcN6aO6q94Ru-ys1JZcd_Iefk,18931
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+ cidc_schemas/schemas/templates/manifests/normal_tissue_dna_template.json,sha256=yAKMW5KIbQ14O8wXUTRdMM1QFg-hxLNz0y4XncxPpRI,18669
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+ cidc_schemas/schemas/templates/manifests/pbmc_template.json,sha256=gHxO3dcBMjzHM6PTCg7eZwFnKF4cEbXFZdVeZHfCQG8,18524
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+ cidc_schemas/schemas/templates/manifests/plasma_template.json,sha256=VNraMcIdpxvPJC5SH4nnUeqOCz5HUuiGiMcKC20Ctso,16138
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+ cidc_schemas/schemas/templates/manifests/tissue_slide_template.json,sha256=q2GmOA2bstMRJmkigOri_uFYKJNHJG3qjVXUjV410Ls,16557
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  cidc_schemas/schemas/templates/manifests/tumor_normal_pairing_template.json,sha256=lVJrGb28n-vyfjGBzhrzjn1lMKw1b4HXXmWtwA603v0,2797
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- cidc_schemas/schemas/templates/manifests/tumor_tissue_dna_template.json,sha256=eoX_YIl1HfQXiL7Q6ybIuOLs85Nbn7EylJ8dzXKiMZw,18674
156
- cidc_schemas/schemas/templates/manifests/tumor_tissue_rna_template.json,sha256=HK2Q2VQcDhP8FZDZapk04Qx2-Tji9dCMH1UpkVhU3Vs,17819
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- nci_cidc_schemas-0.27.7.dist-info/licenses/LICENSE,sha256=zK77-w4rYCZBHAYJEGkcFuPXwKIsP7jMPZ2iQOXjzko,1072
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- nci_cidc_schemas-0.27.7.dist-info/METADATA,sha256=8TAQGFz61x4X7-SSENzJWG2I1xx2-XDGj-RmDT7wHkw,4553
159
- nci_cidc_schemas-0.27.7.dist-info/WHEEL,sha256=hLAVbN_1g7qXnG_3sY9erV0tsmek_RdDpqqJkhwSgEY,109
160
- nci_cidc_schemas-0.27.7.dist-info/entry_points.txt,sha256=kSyTzXeJQrJp_2ZX0GS_NnbJR8ceQKLBSgER46PM0hs,55
161
- nci_cidc_schemas-0.27.7.dist-info/top_level.txt,sha256=Wwb5Cu7QrnbmSJxI2d00e3-Mir36t0jTRnSulmfhi30,13
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- nci_cidc_schemas-0.27.7.dist-info/RECORD,,
155
+ cidc_schemas/schemas/templates/manifests/tumor_tissue_dna_template.json,sha256=LpaoDXDS11NCa-Dv37N-tzEGomswQrx5fypkUcG7xJk,18956
156
+ cidc_schemas/schemas/templates/manifests/tumor_tissue_rna_template.json,sha256=-gww6NCHbtbI5z7UmNSmKyPK3IqKCE8F6n4XwTAb_gk,18101
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+ nci_cidc_schemas-0.27.9.dist-info/licenses/LICENSE,sha256=zK77-w4rYCZBHAYJEGkcFuPXwKIsP7jMPZ2iQOXjzko,1072
158
+ nci_cidc_schemas-0.27.9.dist-info/METADATA,sha256=NUnDS-D4-ulcj0l6fpp2VPhdjOraCbx2h92kOYcuxU4,4553
159
+ nci_cidc_schemas-0.27.9.dist-info/WHEEL,sha256=MAQBAzGbXNI3bUmkDsiV_duv8i-gcdnLzw7cfUFwqhU,109
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+ nci_cidc_schemas-0.27.9.dist-info/entry_points.txt,sha256=kSyTzXeJQrJp_2ZX0GS_NnbJR8ceQKLBSgER46PM0hs,55
161
+ nci_cidc_schemas-0.27.9.dist-info/top_level.txt,sha256=Wwb5Cu7QrnbmSJxI2d00e3-Mir36t0jTRnSulmfhi30,13
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+ nci_cidc_schemas-0.27.9.dist-info/RECORD,,
{nci_cidc_schemas-0.27.7.dist-info → nci_cidc_schemas-0.27.9.dist-info}/WHEEL RENAMED
@@ -1,5 +1,5 @@
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  Wheel-Version: 1.0
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- Generator: setuptools (78.0.1)
2
+ Generator: setuptools (78.1.0)
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  Root-Is-Purelib: true
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  Tag: py2-none-any
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  Tag: py3-none-any