nci-cidc-schemas 0.27.19__py2.py3-none-any.whl → 0.27.21__py2.py3-none-any.whl

cidc_schemas/__init__.py

@@ -2,4 +2,4 @@
 
 __author__ = """NCI"""
 __email__ = "nci-cidc-tools-admin@mail.nih.gov"
-__version__ = "0.27.19"
+__version__ = "0.27.21"

cidc_schemas/prism/constants.py

@@ -26,6 +26,7 @@ SUPPORTED_ASSAYS = [
     "ctdna",
     "microbiome",
     "mihc",
+    "scrnaseq",
 ]
 
 SUPPORTED_SHIPPING_MANIFESTS = [
@@ -93,6 +94,7 @@ ASSAY_TO_FILEPATH: Dict[str, str] = {
             "nanostring",
             "olink",
             "mihc",
+            "scrnaseq",
         ]
     },
 }

cidc_schemas/prism/core.py

@@ -18,6 +18,7 @@ from .merger import PRISM_MERGE_STRATEGIES, MergeCollisionException
 from ..util import get_logger
 from jsonmerge import Merger
 from jsonpointer import EndOfList, JsonPointer, JsonPointerException, resolve_pointer
+from datetime import date
 
 from .constants import SUPPORTED_TEMPLATES
 
@@ -533,4 +534,25 @@ def prismify(
     else:
         root_ct_obj = template_root_obj
 
+    # Adding additional fields during manifest ingestion
+    if "shipments" in root_ct_obj:
+        if len(root_ct_obj["shipments"]) != 1:
+            raise Exception("Can only process one manifest at a time")
+        root_ct_obj["shipments"][0]["upload_type"] = template.type
+        root_ct_obj["shipments"][0]["date_ingested"] = date.today().strftime("%Y-%m-%d")
+        manifest = root_ct_obj["shipments"][0]
+        for participant in root_ct_obj["participants"]:
+            for sample in participant["samples"]:
+                fields = [
+                    "manifest_id",
+                    "upload_type",
+                    "assay_type",
+                    "ship_to_name",
+                    "ship_from_name",
+                    "date_ingested",
+                ]
+                for field in fields:
+                    if field in manifest:
+                        sample[field] = manifest[field]
+
     return root_ct_obj, collected_files, errors_so_far

cidc_schemas/schemas/assays/components/available_assays.json

@@ -130,6 +130,17 @@
         "idRef": "batch_id"
       }
     },
+    "scrnaseq": {
+      "type": "array",
+      "description": "scRNASeq",
+      "items": {
+        "$ref": "assays/scrnaseq_assay.json"
+      },
+      "mergeStrategy": "arrayMergeById",
+      "mergeOptions": {
+        "idRef": "batch_id"
+      }
+    },
     "nanostring": {
       "type": "array",
       "description": "Nanostring",

cidc_schemas/schemas/assays/components/scrnaseq_input.json

@@ -0,0 +1,39 @@
+{
+  "$schema": "metaschema/strict_meta_schema.json#",
+  "$id": "scrnaseq_input",
+  "title": "scRNAseq Input Files and Data",
+  "type": "object",
+  "description": "scRNAseq assay input files and data",
+  "inheritableBase": true,
+  "properties": {
+    "lane": {
+      "description": "Lane used for this run",
+      "type": "string"
+    },
+    "read_1_file": {
+      "description": "Contains the cell barcode and unique molecular identifier",
+      "$ref": "artifacts/artifact_gz.json"
+    },
+    "read_2_file": {
+      "description": "Contains the cDNA (transcript) sequence",
+      "$ref": "artifacts/artifact_gz.json"
+    },
+    "library_yield_ng": {
+      "description": "Resulting yield (in ng) from library construction.",
+      "type": "number"
+    },
+    "rin": {
+      "description": "RNA integrity number. (0-10)",
+      "type": "number",
+      "minimum": 0,
+      "maximum": 10
+    }
+  },
+  "required": [
+    "lane",
+    "read_1_file",
+    "read_2_file",
+    "library_yield_ng",
+    "rin"
+  ]
+}

cidc_schemas/schemas/assays/components/scrnaseq_preamble.json

@@ -0,0 +1,65 @@
+{
+  "$schema": "metaschema/strict_meta_schema.json#",
+  "$id": "scrnaseq_preamble",
+  "title": "ScRNA Preamble",
+  "description": "Preamble information in an scRNAseq assay",
+  "type": "object",
+  "inheritableBase": true,
+  "properties": {
+    "azimuth_reference": {
+      "description": "Cell type annotation will be performed with this Azimuth reference for all samples in the batch.",
+      "type": "string",
+      "enum": [
+        "adiposeref",
+        "bonemarrowref",
+        "fetusref",
+        "heartref",
+        "humancortexref",
+        "kidneyref",
+        "lungref",
+        "pancreasref",
+        "pbmcref",
+        "tonsilref",
+        "none"
+      ]
+    },
+    "tabula_sapiens_reference": {
+      "description": "Cell type annotation will be performed with this Tabula Sapiens reference for all samples in the batch.",
+      "type": "string",
+      "enum": [
+        "bladder",
+        "blood",
+        "bone marrow",
+        "eye",
+        "fat",
+        "immune",
+        "mammary",
+        "prostrate",
+        "skin",
+        "endothelial",
+        "none"
+      ]
+    },
+    "assay_chemistry_version": {
+      "description": "The specific version of the 10x Genomics single-cell gene expression assay chemistry used to prepare and sequence a sample.",
+      "type": "string",
+      "enum": [
+        "Single Cell 3' v2",
+        "Single Cell 3' v3",
+        "Single Cell 3' v3.1",
+        "Single Cell 3' HT v3.1",
+        "Single Cell 3' v4"
+      ]
+    },
+    "barcode_include_file_version": {
+      "description": "Barcode inclusion file version for the 10x Genomics single-cell gene expression assay. Refer to https://kb.10xgenomics.com/hc/en-us/articles/115004506263-What-is-a-barcode-whitelist for more information. '2' for 737K-august-2016.txt (Single Cell 3' v2), '3' for 3M-february-2018.txt.gz (Single Cell 3' v3, Single Cell 3' v3.1, Single Cell 3' HT v3.1), '4' for 3M-3pgex-may-2023.txt.gz (Single Cell 3' v4)",
+      "type": "string",
+      "enum": ["2","3","4"]
+    },
+
+    "total_barcode_and_umi_length_in_read": {
+      "description": "Should be a a positive integer around 26-28 bp. Equals to the sum of the cell barcode and the unique molecular identifier (UMI) in read 1.",
+      "type": "integer"
+    }
+  }
+}

cidc_schemas/schemas/assays/scrnaseq_assay.json

@@ -0,0 +1,74 @@
+{
+    "$schema": "metaschema/strict_meta_schema.json#",
+    "$id": "scrnaseq_assay",
+    "title": "scRNAseq Assay",
+    "type": "object",
+    "$comment": "description used in docs/index.html and docs/assays.scrnaseq.html",
+    "description": "Single Cell RNA Sequencing (scRNAseq) assay",
+    "additionalProperties": false,
+    "definitions": {
+        "record": {
+            "type": "object",
+            "mergeStrategy": "objectMerge",
+            "description": "A single data record from a scRNAseq assay.",
+            "additionalProperties": false,
+            "required": [
+                "cimac_id",
+                "details"
+            ],
+            "properties": {
+                "cimac_id": {
+                    "description": "Id of an sample within this clinical trial, that this assay record is based upon.",
+                    "$ref": "sample.json#properties/cimac_id"
+                },
+                "details": {
+                    "$ref": "assays/components/scrnaseq_input.json"
+                }
+            }
+        }
+    },
+    "properties": {
+        "assay_creator": {
+            "$ref": "assays/components/assay_core.json#properties/assay_creator"
+        },
+        "batch_id": {
+            "description": "Batch identification number. Unique to every upload.",
+            "type": "string"
+        },
+        "azimuth_reference": {
+            "$ref": "assays/components/scrnaseq_preamble.json#properties/azimuth_reference"
+        },
+        "tabula_sapiens_reference": {
+            "$ref": "assays/components/scrnaseq_preamble.json#properties/tabula_sapiens_reference"
+        },
+        "assay_chemistry_version": {
+            "$ref": "assays/components/scrnaseq_preamble.json#properties/assay_chemistry_version"
+        },
+        "barcode_include_file_version": {
+            "$ref": "assays/components/scrnaseq_preamble.json#properties/barcode_include_file_version"
+        },
+        "total_barcode_and_umi_length_in_read": {
+            "$ref": "assays/components/scrnaseq_preamble.json#properties/total_barcode_and_umi_length_in_read"
+        },
+
+        "samples_metadata_csv": {"$ref": "artifacts/artifact_csv.json"},
+
+
+        "records": {
+            "type": "array",
+            "description": "A single data record from a scrnaseq assay.",
+            "items": {
+                "$ref": "assays/scrnaseq_assay.json#definitions/record"
+            },
+            "mergeStrategy": "append"
+        }
+    },
+    "required": [
+        "assay_creator",
+        "batch_id",
+        "assay_chemistry_version",
+        "barcode_include_file_version",
+        "samples_metadata_csv",
+        "records"
+    ]
+}

cidc_schemas/schemas/sample.json

@@ -537,6 +537,30 @@
         "intended_assay": {
             "type": "string",
             "description": "The assay that this sample is expected to be used as input for."
+        },
+        "manifest_id": {
+            "type": "string",
+            "description": "Id of the manifest"
+        },
+        "upload_type": {
+            "type": "string",
+            "description": "Type of manifest"
+        },
+        "date_ingested": {
+            "type": "string",
+            "description": "Date CIDC ingested the sample/manifest"
+        },
+        "assay_type": {
+            "type": "string",
+            "description": "Assay type of sample"
+        },
+        "ship_to_name": {
+            "type": "string",
+            "description": "Recipient of sample"
+        },
+        "ship_from_name": {
+            "type": "string",
+            "description": "Sender of sample"
         }
     },
     "additionalProperties": false,

cidc_schemas/schemas/shipping_core.json

@@ -60,7 +60,7 @@
         "Nanostring",
         "NULISA",
         "MIBI",
-        "scRNA-Seq",
+        "scRNAseq",
         "snRNA-Seq",
         "Visium"
       ]
@@ -181,6 +181,14 @@
     "receiving_party": {
       "description": "Site where sample was shipped to be assayed.",
       "type": "string"
+    },
+    "upload_type": {
+      "description": "The type of manifest being uploaded",
+      "type": "string"
+    },
+    "date_ingested": {
+      "description": "The date CIDC ingests the manifest",
+      "type": "string"
     }
   }
 }

cidc_schemas/schemas/templates/assays/scrnaseq_template.json

@@ -0,0 +1,97 @@
+{    "title": "scRNAseq assay template",
+    "description": "Single Cell RNA Sequencing (scRNAseq) submission.",
+    "prism_template_root_object_schema": "assays/scrnaseq_assay.json",
+    "prism_template_root_object_pointer": "/assays/scrnaseq/0",
+    "properties":
+    {
+        "worksheets":
+        {
+            "scRNAseq":
+            {
+                "preamble_rows":
+                {
+                    "protocol identifier":
+                    {
+                        "merge_pointer": "3/protocol_identifier",
+                        "type_ref": "clinical_trial.json#properties/protocol_identifier"
+                    },
+                    "assay creator":
+                    {
+                        "merge_pointer": "0/assay_creator",
+                        "type_ref": "assays/scrnaseq_assay.json#properties/assay_creator"
+                    },
+                    "batch id": {
+                        "merge_pointer": "0/batch_id",
+                        "type_ref": "assays/scrnaseq_assay.json#properties/batch_id"
+                    },
+                    "azimuth reference": {
+                        "merge_pointer": "0/azimuth_reference",
+                        "type_ref": "assays/components/scrnaseq_preamble.json#properties/azimuth_reference",
+                        "allow_empty": true
+                    },
+                    "tabula sapiens reference": {
+                        "merge_pointer": "0/tabula_sapiens_reference",
+                        "type_ref": "assays/components/scrnaseq_preamble.json#properties/tabula_sapiens_reference",
+                        "allow_empty": true
+                    },
+                    "assay chemistry version": {
+                        "merge_pointer": "0/assay_chemistry_version",
+                        "type_ref": "assays/components/scrnaseq_preamble.json#properties/assay_chemistry_version"
+                    },
+                    "barcode include file version": {
+                        "merge_pointer": "0/barcode_include_file_version",
+                        "type_ref": "assays/components/scrnaseq_preamble.json#properties/barcode_include_file_version"
+                    },
+                    "total barcode and umi length in read 1": {
+                        "merge_pointer": "0/total_barcode_and_umi_length_in_read",
+                        "type_ref": "assays/components/scrnaseq_preamble.json#properties/total_barcode_and_umi_length_in_read"
+                    },
+                    "sample metadata csv": {
+                        "merge_pointer": "0/samples_metadata_csv",
+                        "gcs_uri_format": "{protocol identifier}/scrnaseq/{batch id}/samples_metadata.csv",
+                        "is_artifact": 1,
+                        "type_ref": "assays/components/local_file.json#properties/file_path"
+                    }
+                },
+                "prism_data_object_pointer": "/records/-",
+                "data_columns":
+                {
+                    "Samples":
+                    {
+                        "Cimac ID":
+                        {
+                            "merge_pointer": "0/cimac_id",
+                            "type_ref": "sample.json#properties/cimac_id"
+                        },
+                        "Lane": {
+                            "merge_pointer": "0/details/lane",
+                            "type": "string"
+                        },
+                        "Read 1": {
+                            "merge_pointer": "0/details/read_1_file",
+                            "is_artifact": 1,
+                            "gcs_uri_format": "{protocol identifier}/scrnaseq/{batch id}/{cimac id}/read_1.gz",
+                            "type_ref": "assays/components/local_file.json#properties/file_path"
+                        },
+                        "Read 2": {
+                            "merge_pointer": "0/details/read_2_file",
+                            "is_artifact": 1,
+                            "gcs_uri_format": "{protocol identifier}/scrnaseq/{batch id}/{cimac id}/read_1.gz",
+                            "type_ref": "assays/components/local_file.json#properties/file_path"
+                        },
+                        "library yield ng": {
+                            "merge_pointer": "0/details/library_yield_ng",
+                            "type_ref": "assays/components/scrnaseq_input.json#properties/library_yield_ng",
+                            "allow_empty": true
+                        },
+                        "rin": {
+                            "merge_pointer": "0/details/rin",
+                            "type_ref": "assays/components/scrnaseq_input.json#properties/rin",
+                            "allow_empty": true
+                        }
+                    }
+                }
+            }
+        }
+    }
+}

{nci_cidc_schemas-0.27.19.dist-info → nci_cidc_schemas-0.27.21.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: nci_cidc_schemas
-Version: 0.27.19
+Version: 0.27.21
 Summary: The CIDC data model and tools for working with it.
 Home-page: https://github.com/NCI-CIDC/cidc-schemas
 Author: NCI

{nci_cidc_schemas-0.27.19.dist-info → nci_cidc_schemas-0.27.21.dist-info}/RECORD

@@ -1,4 +1,4 @@
-cidc_schemas/__init__.py,sha256=f8qXjvErdDn3uj8JNVt_2j7ILtLlR8X8Jqtrx0Sv0Hk,136
+cidc_schemas/__init__.py,sha256=VCp_9EcG-4L8tZOfe9noiPFJoIcB7WIS2dQZJzj7wLo,136
 cidc_schemas/cli.py,sha256=gWiktRlraNH8Q0zNUae9dohKjPwBmcY0BJwdcQ_fIic,4099
 cidc_schemas/constants.py,sha256=RULs7pGuBAVq1teXymrfbVsK23ZowJvLuZlv0KcjL-Y,698
 cidc_schemas/json_validation.py,sha256=spmPsqinib7Ns5GvWOKKa1rc7IrN_s2bqifpTKdaLVU,23288
@@ -11,8 +11,8 @@ cidc_schemas/util.py,sha256=P-889E64I3i9iroxw5qORguzr09Ac7tsgzsoGeGsfwM,4716
 cidc_schemas/metaschema/strict_meta_schema.json,sha256=3FiS0r2dAXgfPsruJwZYbQoQnHhC_yl-3mclX8gfiQU,6428
 cidc_schemas/pipeline_configs/rna_level1_analysis_config.yaml.j2,sha256=6no9sFqwzb1T61RZGD-owDt2K5R8G_fPTzflV4fOroo,2832
 cidc_schemas/prism/__init__.py,sha256=J5Tj0X7Di6cyxAjaduOUp2aVyvl8UI67bgxEkgttvcU,530
-cidc_schemas/prism/constants.py,sha256=xRxwWtux1PUed2BsdfW9-21NQzNdc05HYYcO5Q0jkEQ,2357
-cidc_schemas/prism/core.py,sha256=2WZ6e1-T88zHUYnl5PnD9pBSu-enRJBtRsf-WKc42Wk,19301
+cidc_schemas/prism/constants.py,sha256=l_bF54Vn50XbuXi3yKZkKrURt-dwbfOnL_5dGlpuoF8,2397
+cidc_schemas/prism/core.py,sha256=tXDCCHurvcrxfU11meH3NRAVo9niklup0dpLRoIXwPk,20242
 cidc_schemas/prism/extra_metadata.py,sha256=S9w5EGAT0xwaWMrpYluF7Y1ONsI4wFtxFD8ib6Va_fU,8567
 cidc_schemas/prism/merger.py,sha256=36CKBPVoWecHuvGp3oT9a2d4jWIkvKuS_UofKTEpMYs,13065
 cidc_schemas/prism/pipelines.py,sha256=dvZtoC7pEVgdPual_DZUTBFfgvSV7yTdk1RHwi5h6Vs,33522
@@ -20,8 +20,8 @@ cidc_schemas/schemas/aliquot.json,sha256=F24s6xGTeJl-VT6s6wvV8YtMA4O-0BsUCwtD2OE
 cidc_schemas/schemas/clinical_data.json,sha256=ubt2dqTLCbDuxuOXrBObT_xLHVSArMBx4oASFOAYEas,1474
 cidc_schemas/schemas/clinical_trial.json,sha256=aUjYgdtlRWDfULk0-apralt4-KrtjriUqt3qNTdL2Rc,4442
 cidc_schemas/schemas/participant.json,sha256=X72GQSdLqhZl_Vg8OHPqRotblIluNSmiw8N5UeM-di8,2843
-cidc_schemas/schemas/sample.json,sha256=4WnxrgJ978CybHg3bQ2JrYgi_0ih0zHyIhr1DwPuDRc,21519
-cidc_schemas/schemas/shipping_core.json,sha256=6ac58ERguC0S-O-OS3p1zfm07y6ARDTl3mTpAFO0azk,4396
+cidc_schemas/schemas/sample.json,sha256=ljUzhe7J2WKHpLcz5XZTxIx7oRQa8uEYO-OQse5L-HA,22227
+cidc_schemas/schemas/shipping_core.json,sha256=HXuAmmuQS8xzi-2G1yUCXsi8TYAIS9-Oylbidjgh3sM,4618
 cidc_schemas/schemas/artifacts/artifact_bam.json,sha256=nPy3qx07--arLyb9VgfdVK6OJoMPhr6rnp-3AF6o82Q,1653
 cidc_schemas/schemas/artifacts/artifact_bam_bai.json,sha256=S1LxCZVyN3v-Hxhs7TEDbGcV-y7LVdAoLzGblT9IhEk,1671
 cidc_schemas/schemas/artifacts/artifact_bed.json,sha256=nGPKiAd2GQGJ6JkdLaqZhfOuyDmsAdUqril1Yao2qmE,1653
@@ -77,6 +77,7 @@ cidc_schemas/schemas/assays/nanostring_assay.json,sha256=XAL6n80sxaAwUcNrx-pgA_Y
 cidc_schemas/schemas/assays/olink_assay.json,sha256=kQrUPjDKLKYyWpXoauiNDa0FANxPH_1bOfHeQEY-qAQ,5193
 cidc_schemas/schemas/assays/rna_assay-v0.json,sha256=skNGXbVVDY-6RpPosTHweQYtLntvo0bAiXcOxVSeh1s,3043
 cidc_schemas/schemas/assays/rna_assay.json,sha256=Gh47rRWYJSUIoLK3vvOb8_kFXhlISScrtA7nWasoBZI,409
+cidc_schemas/schemas/assays/scrnaseq_assay.json,sha256=zZSt1AsP5l8DkObi5tsD3oSh1s1aRwr5xUmTRYOLbeQ,2657
 cidc_schemas/schemas/assays/tcr_analysis.json,sha256=Sj8a4A3NpKl4PVu69_3Q0pAsRvIlgT7ltbIFHB7bHZQ,2380
 cidc_schemas/schemas/assays/tcr_assay.json,sha256=lQm_f-3UUT_nqctc4ARjYNPKjpDfmfGzUkgRJf4m36k,4691
 cidc_schemas/schemas/assays/wes_analysis.json,sha256=4RAnkqtCj5-txc189KmwNHJaxjrtIUIbpihFrAJFeIw,2771
@@ -85,7 +86,7 @@ cidc_schemas/schemas/assays/wes_core.json,sha256=dwAe2Hi-K5G0rm_icSbFUEIhDNG7HkE
 cidc_schemas/schemas/assays/wes_tumor_only_analysis.json,sha256=dU3oaeBbPnEv2Xjym7ikWr5ywwolnVbWDu1Weq2m8Wg,2018
 cidc_schemas/schemas/assays/components/antibody.json,sha256=vfLxXkXIcaJ1BXeUjCaJehrRCdVrBW3gxibwrD7zzd4,960
 cidc_schemas/schemas/assays/components/assay_core.json,sha256=QGuLiArVb7lEF2t1Ml4Qt7g4SXY58WuGBPFVgvOLI5w,485
-cidc_schemas/schemas/assays/components/available_assays.json,sha256=eUR_3Unyy4CrnsPifANADpIj-VeINUuAMEjmq25gnZc,3781
+cidc_schemas/schemas/assays/components/available_assays.json,sha256=XEzfK_ocbR17loALDqLPNtkG6aLcfYQLxqbl_AFvoW8,4034
 cidc_schemas/schemas/assays/components/available_ngs_analyses.json,sha256=dmC10wI7roGVwbf5T8DxIW1geIjks-Sl-GHJkJXc6eQ,1163
 cidc_schemas/schemas/assays/components/composite_image.json,sha256=k9EaBG3y9j-lvg3nQNZbfVpo9fK_gUz1-9iTwjlTDfE,733
 cidc_schemas/schemas/assays/components/controls.json,sha256=_Wxz7W2msTGJ2Ei4XZg0Qy1t8A5_rLSHNvdPurC073E,458
@@ -105,6 +106,8 @@ cidc_schemas/schemas/assays/components/ngs_assay_core.json,sha256=jqJbrnSPZV6pmJ
 cidc_schemas/schemas/assays/components/ngs_assay_record.json,sha256=DwHKyRNDQ6h8PUz0KdBfmcd0Pz1Q1rOeqWpKfUIwjZM,615
 cidc_schemas/schemas/assays/components/reads_core.json,sha256=p5RWN2TEGefenpz6pZlOG6MZ6tTAviKUx1bLCZtsNLk,1139
 cidc_schemas/schemas/assays/components/reads_with_index.json,sha256=pg3wMQYMawCb1ZxJwiH_yCH3TAYu29EIZnB18AevzmM,1091
+cidc_schemas/schemas/assays/components/scrnaseq_input.json,sha256=fIvV_xJPXDCoYajbsu21ISdhLaQVYjbPg_3nR_Jo7cE,1003
+cidc_schemas/schemas/assays/components/scrnaseq_preamble.json,sha256=himJMT53FS2XdDZ81u_eW2tYVS212AqZuxdGKWgSwXU,2251
 cidc_schemas/schemas/assays/components/imaging/mif_entry.json,sha256=0jYCSMD3j5r_u7Z-TJRV2ZLt7C4r7KuTtH8lMB6O9rU,546
 cidc_schemas/schemas/assays/components/imaging/mif_export.json,sha256=CVGCpIVcHkTnIQvBibU4HkdYcm2lYzGYu3pXGm4bUa8,1728
 cidc_schemas/schemas/assays/components/imaging/mif_input.json,sha256=Hf1PKkk6pHRLcGGJrVmkhC6SApOA5pD6XJFRscM9ee0,1000
@@ -144,6 +147,7 @@ cidc_schemas/schemas/templates/assays/nanostring_template.json,sha256=XFbf72EHNs
 cidc_schemas/schemas/templates/assays/olink_template.json,sha256=3YqkeVF9PnXUeETkf0RfEB14jprNPMWWwY4GTALfuWY,6335
 cidc_schemas/schemas/templates/assays/rna_bam_template.json,sha256=l2OLgb8hx3fAupUvdWWtn_QbOiyicYE2u4diVz7C5cg,3084
 cidc_schemas/schemas/templates/assays/rna_fastq_template.json,sha256=ZSKfzQ38SkpeKTK-xT9YAz0tRafCjo-IUZsr8GBYLOM,3344
+cidc_schemas/schemas/templates/assays/scrnaseq_template.json,sha256=H_xU32U-1S7HCqZanaSqWb6KJ97jMQIBjwO_zsxDsfg,4843
 cidc_schemas/schemas/templates/assays/tcr_adaptive_template.json,sha256=Hb8ngxw6XHjIqtA9W1eLfO3ciH18VfRTKOQvipX14Dg,3269
 cidc_schemas/schemas/templates/assays/tcr_fastq_template.json,sha256=7Qq4ssI8ErDrHy5RIxjPcNiDf2IBHG42JcngDFKxqlE,3457
 cidc_schemas/schemas/templates/assays/wes_bam_template.json,sha256=nxbb_lNPi-5cdAlwmSBvn7cS_8gMjROOz7wBWk6ev0Y,2724
@@ -158,9 +162,9 @@ cidc_schemas/schemas/templates/manifests/tissue_slide_template.json,sha256=q2GmO
 cidc_schemas/schemas/templates/manifests/tumor_normal_pairing_template.json,sha256=lVJrGb28n-vyfjGBzhrzjn1lMKw1b4HXXmWtwA603v0,2797
 cidc_schemas/schemas/templates/manifests/tumor_tissue_dna_template.json,sha256=LpaoDXDS11NCa-Dv37N-tzEGomswQrx5fypkUcG7xJk,18956
 cidc_schemas/schemas/templates/manifests/tumor_tissue_rna_template.json,sha256=-gww6NCHbtbI5z7UmNSmKyPK3IqKCE8F6n4XwTAb_gk,18101
-nci_cidc_schemas-0.27.19.dist-info/licenses/LICENSE,sha256=zK77-w4rYCZBHAYJEGkcFuPXwKIsP7jMPZ2iQOXjzko,1072
-nci_cidc_schemas-0.27.19.dist-info/METADATA,sha256=nd0l1cWs8o5RrWyX4NC5dYRisBR7UC5uzcX4PRJtBEc,4554
-nci_cidc_schemas-0.27.19.dist-info/WHEEL,sha256=JNWh1Fm1UdwIQV075glCn4MVuCRs0sotJIq-J6rbxCU,109
-nci_cidc_schemas-0.27.19.dist-info/entry_points.txt,sha256=kSyTzXeJQrJp_2ZX0GS_NnbJR8ceQKLBSgER46PM0hs,55
-nci_cidc_schemas-0.27.19.dist-info/top_level.txt,sha256=Wwb5Cu7QrnbmSJxI2d00e3-Mir36t0jTRnSulmfhi30,13
-nci_cidc_schemas-0.27.19.dist-info/RECORD,,
+nci_cidc_schemas-0.27.21.dist-info/licenses/LICENSE,sha256=zK77-w4rYCZBHAYJEGkcFuPXwKIsP7jMPZ2iQOXjzko,1072
+nci_cidc_schemas-0.27.21.dist-info/METADATA,sha256=haii5X0q96KRjTe_PXdR1-oyBp4PdHQ1r-y20sfh9d0,4554
+nci_cidc_schemas-0.27.21.dist-info/WHEEL,sha256=JNWh1Fm1UdwIQV075glCn4MVuCRs0sotJIq-J6rbxCU,109
+nci_cidc_schemas-0.27.21.dist-info/entry_points.txt,sha256=kSyTzXeJQrJp_2ZX0GS_NnbJR8ceQKLBSgER46PM0hs,55
+nci_cidc_schemas-0.27.21.dist-info/top_level.txt,sha256=Wwb5Cu7QrnbmSJxI2d00e3-Mir36t0jTRnSulmfhi30,13
+nci_cidc_schemas-0.27.21.dist-info/RECORD,,