nci-cidc-schemas 0.26.37__py2.py3-none-any.whl → 0.26.38__py2.py3-none-any.whl

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Files changed (8) hide show
  1. cidc_schemas/__init__.py +1 -1
  2. cidc_schemas/unprism.py +4 -0
  3. {nci_cidc_schemas-0.26.37.dist-info → nci_cidc_schemas-0.26.38.dist-info}/METADATA +1 -1
  4. {nci_cidc_schemas-0.26.37.dist-info → nci_cidc_schemas-0.26.38.dist-info}/RECORD +8 -8
  5. {nci_cidc_schemas-0.26.37.dist-info → nci_cidc_schemas-0.26.38.dist-info}/WHEEL +1 -1
  6. {nci_cidc_schemas-0.26.37.dist-info → nci_cidc_schemas-0.26.38.dist-info}/LICENSE +0 -0
  7. {nci_cidc_schemas-0.26.37.dist-info → nci_cidc_schemas-0.26.38.dist-info}/entry_points.txt +0 -0
  8. {nci_cidc_schemas-0.26.37.dist-info → nci_cidc_schemas-0.26.38.dist-info}/top_level.txt +0 -0
cidc_schemas/__init__.py CHANGED
@@ -2,4 +2,4 @@
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  __author__ = """NCI"""
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  __email__ = "nci-cidc-tools-admin@mail.nih.gov"
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- __version__ = "0.26.37"
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+ __version__ = "0.26.38"
cidc_schemas/unprism.py CHANGED
@@ -3,6 +3,7 @@
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  from io import StringIO, BytesIO
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  from typing import Callable, Dict, List, NamedTuple, Optional, Union
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+ import math
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  import pandas as pd
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  from . import prism
@@ -332,6 +333,9 @@ def _cytof_analysis_derivation(context: DeriveFilesContext) -> DeriveFilesResult
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  res_df = pd.DataFrame()
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  for index, row in cell_counts_analysis_csvs.iterrows():
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  obj_url = row[f"output_files.{combined_f_kind}.object_url"]
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+ if isinstance(obj_url, float) and math.isnan(obj_url):
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+ # output file does not exist - continue (don't fail when a cytof assay is not included in analysis)
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+ continue
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  cell_counts_csv = context.fetch_artifact(obj_url, True)
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{nci_cidc_schemas-0.26.37.dist-info → nci_cidc_schemas-0.26.38.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: nci_cidc_schemas
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- Version: 0.26.37
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+ Version: 0.26.38
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  Summary: The CIDC data model and tools for working with it.
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  Home-page: https://github.com/NCI-CIDC/cidc-schemas
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  Author: NCI
{nci_cidc_schemas-0.26.37.dist-info → nci_cidc_schemas-0.26.38.dist-info}/RECORD RENAMED
@@ -1,4 +1,4 @@
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- cidc_schemas/__init__.py,sha256=h-hrmAr_pO3lT0PGp-TreTtSOzEBGlYR2jFq8uUp23o,136
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+ cidc_schemas/__init__.py,sha256=9Df5WbWCck9fRAaOji8IQO8BZvV88vXOvtUNUoYYB1c,136
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  cidc_schemas/cli.py,sha256=gWiktRlraNH8Q0zNUae9dohKjPwBmcY0BJwdcQ_fIic,4099
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  cidc_schemas/constants.py,sha256=RULs7pGuBAVq1teXymrfbVsK23ZowJvLuZlv0KcjL-Y,698
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  cidc_schemas/json_validation.py,sha256=81Dql5LAw4t-0t1cYKpCNQqiUok9rQvGxSk-9VxyILA,20047
@@ -6,7 +6,7 @@ cidc_schemas/migrations.py,sha256=Amg_T4cFgMzySD7yNnT_PWpqP7hwlTWGeHlI_RSXuRI,14
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  cidc_schemas/template.py,sha256=gM6Xp1fOZaF8wOLzY5HGdxi4p8cEYhYXRpqRPncYua0,49865
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  cidc_schemas/template_reader.py,sha256=xXtLRKu1y4FrPj8RgyGOmB2hlsCDXcuvMBWami2_jV8,13119
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  cidc_schemas/template_writer.py,sha256=faOhvSDTp4nuPhOtVQR_J7YNnFzx-vh7oyNpFdee1mY,18236
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- cidc_schemas/unprism.py,sha256=5EeqNKedVEf15CJiMQ-ImXd1wIbNnzihv21rAMClZyc,13325
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+ cidc_schemas/unprism.py,sha256=TOD3CSGkgNnTtT-OeCCE3Ihlam84lr8XGOmtdSy2lL8,13545
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  cidc_schemas/util.py,sha256=ZCQ--ROZyXYVB034fHHmxZXb5F0G2GwzPwSfyfegtGk,4348
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  cidc_schemas/metaschema/strict_meta_schema.json,sha256=3FiS0r2dAXgfPsruJwZYbQoQnHhC_yl-3mclX8gfiQU,6428
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  cidc_schemas/pipeline_configs/rna_level1_analysis_config.yaml.j2,sha256=6no9sFqwzb1T61RZGD-owDt2K5R8G_fPTzflV4fOroo,2832
@@ -154,9 +154,9 @@ cidc_schemas/schemas/templates/manifests/tissue_slide_template.json,sha256=Y3951
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  cidc_schemas/schemas/templates/manifests/tumor_normal_pairing_template.json,sha256=lVJrGb28n-vyfjGBzhrzjn1lMKw1b4HXXmWtwA603v0,2797
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  cidc_schemas/schemas/templates/manifests/tumor_tissue_dna_template.json,sha256=-CC7Hg-qzZ7e5QrrnkybrS1Vrfq2zlgtxU4kRnR5is8,13472
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  cidc_schemas/schemas/templates/manifests/tumor_tissue_rna_template.json,sha256=uPiiEo1xEde6MDhQDapLIjL8XcghgeoCEDdZTzGYFBA,12617
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- nci_cidc_schemas-0.26.37.dist-info/LICENSE,sha256=zK77-w4rYCZBHAYJEGkcFuPXwKIsP7jMPZ2iQOXjzko,1072
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- nci_cidc_schemas-0.26.37.dist-info/METADATA,sha256=Mt2qQfxGcS3Gk4DCRwnghKWQtfC99WAQb2ypxD3gbmw,4314
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- nci_cidc_schemas-0.26.37.dist-info/WHEEL,sha256=TJ49d73sNs10F0aze1W_bTW2P_X7-F4YXOlBqoqA-jY,109
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- nci_cidc_schemas-0.26.37.dist-info/entry_points.txt,sha256=kSyTzXeJQrJp_2ZX0GS_NnbJR8ceQKLBSgER46PM0hs,55
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- nci_cidc_schemas-0.26.37.dist-info/top_level.txt,sha256=Wwb5Cu7QrnbmSJxI2d00e3-Mir36t0jTRnSulmfhi30,13
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- nci_cidc_schemas-0.26.37.dist-info/RECORD,,
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+ nci_cidc_schemas-0.26.38.dist-info/LICENSE,sha256=zK77-w4rYCZBHAYJEGkcFuPXwKIsP7jMPZ2iQOXjzko,1072
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+ nci_cidc_schemas-0.26.38.dist-info/METADATA,sha256=V5e4z-bRTKL8HvnOEW6TP3CoX7Xiphp1lwfXqxOo1NY,4314
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+ nci_cidc_schemas-0.26.38.dist-info/WHEEL,sha256=0VNUDWQJzfRahYI3neAhz2UVbRCtztpN5dPHAGvmGXc,109
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+ nci_cidc_schemas-0.26.38.dist-info/entry_points.txt,sha256=kSyTzXeJQrJp_2ZX0GS_NnbJR8ceQKLBSgER46PM0hs,55
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+ nci_cidc_schemas-0.26.38.dist-info/top_level.txt,sha256=Wwb5Cu7QrnbmSJxI2d00e3-Mir36t0jTRnSulmfhi30,13
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+ nci_cidc_schemas-0.26.38.dist-info/RECORD,,
{nci_cidc_schemas-0.26.37.dist-info → nci_cidc_schemas-0.26.38.dist-info}/WHEEL RENAMED
@@ -1,5 +1,5 @@
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  Wheel-Version: 1.0
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- Generator: setuptools (75.2.0)
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+ Generator: setuptools (75.5.0)
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  Root-Is-Purelib: true
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  Tag: py2-none-any
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  Tag: py3-none-any