nci-cidc-schemas 0.26.35__py2.py3-none-any.whl → 0.26.36__py2.py3-none-any.whl

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Files changed (16) hide show
  1. cidc_schemas/__init__.py +1 -1
  2. cidc_schemas/schemas/templates/manifests/h_and_e_template.json +2 -1
  3. cidc_schemas/schemas/templates/manifests/microbiome_dna_template.json +2 -1
  4. cidc_schemas/schemas/templates/manifests/normal_blood_dna_template.json +8 -4
  5. cidc_schemas/schemas/templates/manifests/normal_tissue_dna_template.json +8 -4
  6. cidc_schemas/schemas/templates/manifests/pbmc_template.json +2 -1
  7. cidc_schemas/schemas/templates/manifests/plasma_template.json +2 -1
  8. cidc_schemas/schemas/templates/manifests/tissue_slide_template.json +2 -1
  9. cidc_schemas/schemas/templates/manifests/tumor_tissue_dna_template.json +8 -4
  10. cidc_schemas/schemas/templates/manifests/tumor_tissue_rna_template.json +2 -1
  11. {nci_cidc_schemas-0.26.35.dist-info → nci_cidc_schemas-0.26.36.dist-info}/METADATA +1 -2
  12. {nci_cidc_schemas-0.26.35.dist-info → nci_cidc_schemas-0.26.36.dist-info}/RECORD +16 -16
  13. {nci_cidc_schemas-0.26.35.dist-info → nci_cidc_schemas-0.26.36.dist-info}/WHEEL +1 -1
  14. {nci_cidc_schemas-0.26.35.dist-info → nci_cidc_schemas-0.26.36.dist-info}/LICENSE +0 -0
  15. {nci_cidc_schemas-0.26.35.dist-info → nci_cidc_schemas-0.26.36.dist-info}/entry_points.txt +0 -0
  16. {nci_cidc_schemas-0.26.35.dist-info → nci_cidc_schemas-0.26.36.dist-info}/top_level.txt +0 -0
cidc_schemas/__init__.py CHANGED
@@ -2,4 +2,4 @@
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  __author__ = """NCI"""
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  __email__ = "nci-cidc-tools-admin@mail.nih.gov"
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- __version__ = "0.26.35"
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+ __version__ = "0.26.36"
cidc_schemas/schemas/templates/manifests/h_and_e_template.json CHANGED
@@ -95,7 +95,8 @@
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  },
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  "cohort name": {
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  "merge_pointer": "2/cohort_name",
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- "type_ref": "participant.json#properties/cohort_name"
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+ "type_ref": "participant.json#properties/cohort_name",
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+ "allow_empty": true
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  },
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  "participant ID": {
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  "merge_pointer": "2/participant_id",
cidc_schemas/schemas/templates/manifests/microbiome_dna_template.json CHANGED
@@ -93,7 +93,8 @@
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  },
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  "cohort name": {
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  "merge_pointer": "2/cohort_name",
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- "type_ref": "participant.json#properties/cohort_name"
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+ "type_ref": "participant.json#properties/cohort_name",
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+ "allow_empty": true
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  },
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  "participant ID": {
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  "merge_pointer": "2/participant_id",
cidc_schemas/schemas/templates/manifests/normal_blood_dna_template.json CHANGED
@@ -93,7 +93,8 @@
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  },
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  "cohort name": {
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  "merge_pointer": "2/cohort_name",
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- "type_ref": "participant.json#properties/cohort_name"
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+ "type_ref": "participant.json#properties/cohort_name",
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+ "allow_empty": true
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  },
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  "participant ID": {
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  "merge_pointer": "2/participant_id",
@@ -190,15 +191,18 @@
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  "DNA quality": {
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  "din value": {
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  "merge_pointer": "/din",
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- "type_ref": "sample.json#properties/din"
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+ "type_ref": "sample.json#properties/din",
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+ "allow_empty": true
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  },
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  "a260/a280 value": {
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  "merge_pointer": "/a260_a280",
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- "type_ref": "sample.json#properties/a260_a280"
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+ "type_ref": "sample.json#properties/a260_a280",
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+ "allow_empty": true
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  },
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  "a260/a230 value": {
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  "merge_pointer": "/a260_a230",
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- "type_ref": "sample.json#properties/a260_a230"
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+ "type_ref": "sample.json#properties/a260_a230",
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+ "allow_empty": true
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  }
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  },
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  "Filled by CIMAC Lab": {
cidc_schemas/schemas/templates/manifests/normal_tissue_dna_template.json CHANGED
@@ -95,7 +95,8 @@
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  },
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  "cohort name": {
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  "merge_pointer": "2/cohort_name",
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- "type_ref": "participant.json#properties/cohort_name"
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+ "type_ref": "participant.json#properties/cohort_name",
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+ "allow_empty": true
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  },
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  "participant ID": {
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  "merge_pointer": "2/participant_id",
@@ -187,15 +188,18 @@
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  "DNA quality": {
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  "din value": {
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  "merge_pointer": "/din",
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- "type_ref": "sample.json#properties/din"
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+ "type_ref": "sample.json#properties/din",
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+ "allow_empty": true
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  },
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  "a260/a280 value": {
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  "merge_pointer": "/a260_a280",
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- "type_ref": "sample.json#properties/a260_a280"
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+ "type_ref": "sample.json#properties/a260_a280",
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+ "allow_empty": true
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  },
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  "a260/a230 value": {
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  "merge_pointer": "/a260_a230",
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- "type_ref": "sample.json#properties/a260_a230"
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+ "type_ref": "sample.json#properties/a260_a230",
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+ "allow_empty": true
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  }
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  },
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  "Filled by CIMAC Lab": {
cidc_schemas/schemas/templates/manifests/pbmc_template.json CHANGED
@@ -177,7 +177,8 @@
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  },
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  "cohort name": {
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  "merge_pointer": "2/cohort_name",
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- "type_ref": "participant.json#properties/cohort_name"
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+ "type_ref": "participant.json#properties/cohort_name",
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+ "allow_empty": true
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  },
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  "participant ID": {
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  "merge_pointer": "2/participant_id",
cidc_schemas/schemas/templates/manifests/plasma_template.json CHANGED
@@ -173,7 +173,8 @@
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  },
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  "cohort name": {
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  "merge_pointer": "2/cohort_name",
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- "type_ref": "participant.json#properties/cohort_name"
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+ "type_ref": "participant.json#properties/cohort_name",
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+ "allow_empty": true
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  },
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  "collection event name": {
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  "merge_pointer": "/collection_event_name",
cidc_schemas/schemas/templates/manifests/tissue_slide_template.json CHANGED
@@ -95,7 +95,8 @@
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  },
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  "cohort name": {
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  "merge_pointer": "2/cohort_name",
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- "type_ref": "participant.json#properties/cohort_name"
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+ "type_ref": "participant.json#properties/cohort_name",
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+ "allow_empty": true
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  },
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  "participant ID": {
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  "merge_pointer": "2/participant_id",
cidc_schemas/schemas/templates/manifests/tumor_tissue_dna_template.json CHANGED
@@ -95,7 +95,8 @@
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  },
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  "cohort name": {
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  "merge_pointer": "2/cohort_name",
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- "type_ref": "participant.json#properties/cohort_name"
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+ "type_ref": "participant.json#properties/cohort_name",
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+ "allow_empty": true
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  },
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  "participant ID": {
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  "merge_pointer": "2/participant_id",
@@ -192,15 +193,18 @@
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  "DNA quality": {
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  "din value": {
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  "merge_pointer": "/din",
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- "type_ref": "sample.json#properties/din"
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+ "type_ref": "sample.json#properties/din",
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+ "allow_empty": true
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  },
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  "a260/a280 value": {
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  "merge_pointer": "/a260_a280",
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- "type_ref": "sample.json#properties/a260_a280"
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+ "type_ref": "sample.json#properties/a260_a280",
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+ "allow_empty": true
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  },
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  "a260/a230 value": {
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  "merge_pointer": "/a260_a230",
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- "type_ref": "sample.json#properties/a260_a230"
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+ "type_ref": "sample.json#properties/a260_a230",
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+ "allow_empty": true
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  }
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  },
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  "Filled by CIMAC Lab": {
cidc_schemas/schemas/templates/manifests/tumor_tissue_rna_template.json CHANGED
@@ -95,7 +95,8 @@
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  },
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  "cohort name": {
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  "merge_pointer": "2/cohort_name",
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- "type_ref": "participant.json#properties/cohort_name"
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+ "type_ref": "participant.json#properties/cohort_name",
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+ "allow_empty": true
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  },
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  "participant ID": {
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  "merge_pointer": "2/participant_id",
{nci_cidc_schemas-0.26.35.dist-info → nci_cidc_schemas-0.26.36.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: nci_cidc_schemas
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- Version: 0.26.35
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+ Version: 0.26.36
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  Summary: The CIDC data model and tools for working with it.
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  Home-page: https://github.com/NCI-CIDC/cidc-schemas
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  Author: NCI
@@ -56,7 +56,6 @@ pip install nci-cidc-schemas
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  - **`docs/`** - the most recent build of the data model documentation, along with templates and scripts for re-generating the documentation.
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  - **`template_examples/`** - example populated Excel files for template specifications in `schemas/templates`, and `.csv`s auto-generated from those `.xlsx`s that allow to transparently keep track of changes in them.
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  - **`tests/`** - tests for the `cidc_schemas` module.
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- - **`.githooks/`** - git hooks, e.g. for auto-generating `.csv`s in `template_examples/` and `.html` documentation files.
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  ### Developer Setup
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{nci_cidc_schemas-0.26.35.dist-info → nci_cidc_schemas-0.26.36.dist-info}/RECORD RENAMED
@@ -1,4 +1,4 @@
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- cidc_schemas/__init__.py,sha256=ADFA3YhRSz91I9C5rj115esQzZvq9FJA6KKjjerNOFo,136
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+ cidc_schemas/__init__.py,sha256=PyjN4BhZxDfIvvKNqCcz38xDv5i4Np3N29vZJJZUFGw,136
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  cidc_schemas/cli.py,sha256=gWiktRlraNH8Q0zNUae9dohKjPwBmcY0BJwdcQ_fIic,4099
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  cidc_schemas/constants.py,sha256=RULs7pGuBAVq1teXymrfbVsK23ZowJvLuZlv0KcjL-Y,698
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  cidc_schemas/json_validation.py,sha256=SyZSW7AAS-qlYLUUV_ri4393utkNsDexcWB73rEmFLs,20035
@@ -143,19 +143,19 @@ cidc_schemas/schemas/templates/assays/tcr_adaptive_template.json,sha256=Hb8ngxw6
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  cidc_schemas/schemas/templates/assays/tcr_fastq_template.json,sha256=7Qq4ssI8ErDrHy5RIxjPcNiDf2IBHG42JcngDFKxqlE,3457
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  cidc_schemas/schemas/templates/assays/wes_bam_template.json,sha256=nxbb_lNPi-5cdAlwmSBvn7cS_8gMjROOz7wBWk6ev0Y,2724
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  cidc_schemas/schemas/templates/assays/wes_fastq_template.json,sha256=vuwuIpqXyqpGxCunpjbHKaBQhfKFnr2R-wMkXDiJdKM,3143
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- cidc_schemas/schemas/templates/manifests/h_and_e_template.json,sha256=sgVDCTfdaPFkCN5KGbwfCJYFQnTw6rqk33eY3AAXkSc,12475
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- cidc_schemas/schemas/templates/manifests/microbiome_dna_template.json,sha256=Zr5ihmNu4Q2jRb55Cn4EFrxrZQJYvJlCIcNHDbsODUw,11829
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- cidc_schemas/schemas/templates/manifests/normal_blood_dna_template.json,sha256=Vk7hS-ji-w5d73CkOqFlSAzcm0ouJBAcdgzxNFFB8jQ,13346
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- cidc_schemas/schemas/templates/manifests/normal_tissue_dna_template.json,sha256=jv4JKiVyyvAvsMMLW8NOGrseOZ8eOWbP1mk9us1Qxqk,12989
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- cidc_schemas/schemas/templates/manifests/pbmc_template.json,sha256=49e5d5WCstjLrLhC2K-82qs1IdwbWjFgR8hFIXRYyKk,17530
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- cidc_schemas/schemas/templates/manifests/plasma_template.json,sha256=cdLEb6kt_Z7zjcw_Bh-5-PFpRUC0YpViuYIw-hKTyAs,15099
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- cidc_schemas/schemas/templates/manifests/tissue_slide_template.json,sha256=sFPytc04_-QtfetvYIeh4PdlBFtlBiOGZY5HmhOzJTM,11024
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+ cidc_schemas/schemas/templates/manifests/h_and_e_template.json,sha256=PiCpfbWd5I29wwYWCQHjQh10g9l84dligYTVvMcJHgM,12524
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+ cidc_schemas/schemas/templates/manifests/microbiome_dna_template.json,sha256=u1QPL83DUvPMcMdYbwmmgT0nSOqkbjQR-asXZ_6p0CY,11878
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+ cidc_schemas/schemas/templates/manifests/normal_blood_dna_template.json,sha256=JudTPeQBjTttX4OXMrVl9DTRM73KgZN3jbtC3lcuQsA,13542
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+ cidc_schemas/schemas/templates/manifests/normal_tissue_dna_template.json,sha256=xCE0pTXRlKOd0dPMKcDIBKXRa81Ka_H5f6OGE1TNmhw,13185
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+ cidc_schemas/schemas/templates/manifests/pbmc_template.json,sha256=c0F9xu9za95i2RSVl_9wjiZIUxczOFNWJaXRy8pJhOg,17579
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+ cidc_schemas/schemas/templates/manifests/plasma_template.json,sha256=43bizjQ7zJt5mQHtUfFHDA_f3L4DxBo4XqgHnFvNPbw,15148
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+ cidc_schemas/schemas/templates/manifests/tissue_slide_template.json,sha256=Y3951-HNUVfvOK4fjUxGJt2gtmGhKZxWiXVLxyZghn8,11073
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  cidc_schemas/schemas/templates/manifests/tumor_normal_pairing_template.json,sha256=lVJrGb28n-vyfjGBzhrzjn1lMKw1b4HXXmWtwA603v0,2797
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- cidc_schemas/schemas/templates/manifests/tumor_tissue_dna_template.json,sha256=D4ICMeHQgKXFDwaMOqrcLcUEF-dYGalagGYDUFAploU,13276
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- cidc_schemas/schemas/templates/manifests/tumor_tissue_rna_template.json,sha256=MpJTjoaTdIlNBAIIxSfmItVevA5BXnajqu_jaEXxBmo,12568
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- nci_cidc_schemas-0.26.35.dist-info/LICENSE,sha256=zK77-w4rYCZBHAYJEGkcFuPXwKIsP7jMPZ2iQOXjzko,1072
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- nci_cidc_schemas-0.26.35.dist-info/METADATA,sha256=_JLgHeJXExaE0Ojart8M35025nFtBsi3RyrmdUzJaD0,4436
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- nci_cidc_schemas-0.26.35.dist-info/WHEEL,sha256=4h2DkfJSb0e6Ob8eR1zE5-yQ9f6nK3Do8SfsDGV3_YQ,109
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- nci_cidc_schemas-0.26.35.dist-info/entry_points.txt,sha256=kSyTzXeJQrJp_2ZX0GS_NnbJR8ceQKLBSgER46PM0hs,55
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- nci_cidc_schemas-0.26.35.dist-info/top_level.txt,sha256=Wwb5Cu7QrnbmSJxI2d00e3-Mir36t0jTRnSulmfhi30,13
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- nci_cidc_schemas-0.26.35.dist-info/RECORD,,
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+ cidc_schemas/schemas/templates/manifests/tumor_tissue_dna_template.json,sha256=-CC7Hg-qzZ7e5QrrnkybrS1Vrfq2zlgtxU4kRnR5is8,13472
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+ cidc_schemas/schemas/templates/manifests/tumor_tissue_rna_template.json,sha256=uPiiEo1xEde6MDhQDapLIjL8XcghgeoCEDdZTzGYFBA,12617
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+ nci_cidc_schemas-0.26.36.dist-info/LICENSE,sha256=zK77-w4rYCZBHAYJEGkcFuPXwKIsP7jMPZ2iQOXjzko,1072
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+ nci_cidc_schemas-0.26.36.dist-info/METADATA,sha256=0hI13s8gAgLo2Z70NJIV5bt8j3H_CUDgWZNJwW86JYY,4314
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+ nci_cidc_schemas-0.26.36.dist-info/WHEEL,sha256=XRxW4r1PNiVhMpP4bT9oWtu3HyndxpJ84SkubFgzp_Y,109
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+ nci_cidc_schemas-0.26.36.dist-info/entry_points.txt,sha256=kSyTzXeJQrJp_2ZX0GS_NnbJR8ceQKLBSgER46PM0hs,55
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+ nci_cidc_schemas-0.26.36.dist-info/top_level.txt,sha256=Wwb5Cu7QrnbmSJxI2d00e3-Mir36t0jTRnSulmfhi30,13
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+ nci_cidc_schemas-0.26.36.dist-info/RECORD,,
{nci_cidc_schemas-0.26.35.dist-info → nci_cidc_schemas-0.26.36.dist-info}/WHEEL RENAMED
@@ -1,5 +1,5 @@
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  Wheel-Version: 1.0
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- Generator: setuptools (71.0.3)
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+ Generator: setuptools (72.1.0)
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  Root-Is-Purelib: true
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  Tag: py2-none-any
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  Tag: py3-none-any