nci-cidc-schemas 0.26.32__py2.py3-none-any.whl → 0.26.34__py2.py3-none-any.whl

cidc_schemas/__init__.py

@@ -2,4 +2,4 @@
 
 __author__ = """NCI"""
 __email__ = "nci-cidc-tools-admin@mail.nih.gov"
-__version__ = "0.26.32"
+__version__ = "0.26.34"

cidc_schemas/schemas/templates/assays/ctdna_template.json

@@ -97,19 +97,22 @@
                 "merge_pointer": "0/on_premise_corrected_depth_file",
                 "type_ref": "assays/components/local_file.json#properties/file_path",
                 "is_artifact": 1,
-                "gcs_uri_format": "{protocol identifier}/ctdna/{batch id}/{cimac id}/OnPrem.correctedDepth.txt"
+                "gcs_uri_format": "{protocol identifier}/ctdna/{batch id}/{cimac id}/OnPrem.correctedDepth.txt",
+                "allow_empty": true
             },
             "on premise parameters file": {
                 "merge_pointer": "0/on_premise_parameters_file",
                 "type_ref": "assays/components/local_file.json#properties/file_path",
                 "is_artifact": 1,
-                "gcs_uri_format": "{protocol identifier}/ctdna/{batch id}/{cimac id}/OnPrem.params.txt"
+                "gcs_uri_format": "{protocol identifier}/ctdna/{batch id}/{cimac id}/OnPrem.params.txt",
+                "allow_empty": true
             },
             "on premise rdata file": {
                 "merge_pointer": "0/on_premise_rdata_file",
                 "type_ref": "assays/components/local_file.json#properties/file_path",
                 "is_artifact": 1,
-                "gcs_uri_format": "{protocol identifier}/ctdna/{batch id}/{cimac id}/OnPrem.RData"
+                "gcs_uri_format": "{protocol identifier}/ctdna/{batch id}/{cimac id}/OnPrem.RData",
+                "allow_empty": true
             },
             "comments": {
                 "type_ref": "assays/ctdna_assay.json#definitions/entry/properties/comments",

{nci_cidc_schemas-0.26.32.dist-info → nci_cidc_schemas-0.26.34.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: nci_cidc_schemas
-Version: 0.26.32
+Version: 0.26.34
 Summary: The CIDC data model and tools for working with it.
 Home-page: https://github.com/NCI-CIDC/cidc-schemas
 Author: NCI
@@ -24,7 +24,7 @@ Requires-Dist: openpyxl ==3.0.7
 Requires-Dist: jsonmerge ==1.6.1
 Requires-Dist: deepdiff ~=4.3.0
 Requires-Dist: jsonpointer ==2.0
-Requires-Dist: pandas ==1.2.4
+Requires-Dist: pandas ==1.5.3
 Requires-Dist: jinja2 ~=3.1.3
 Requires-Dist: nci-cidc-ngs-pipeline-api ==0.1.25
 Requires-Dist: markupsafe ==2.1.5

{nci_cidc_schemas-0.26.32.dist-info → nci_cidc_schemas-0.26.34.dist-info}/RECORD

@@ -1,4 +1,4 @@
-cidc_schemas/__init__.py,sha256=pG73BM0fkcKpH1I0RlSniRM-l2wAhEnNwWYyrochnhY,136
+cidc_schemas/__init__.py,sha256=5VfL7TJUTUC2eX_om5PYcQz83FCUfoSmeQKSu-bPYRA,136
 cidc_schemas/cli.py,sha256=gWiktRlraNH8Q0zNUae9dohKjPwBmcY0BJwdcQ_fIic,4099
 cidc_schemas/constants.py,sha256=RULs7pGuBAVq1teXymrfbVsK23ZowJvLuZlv0KcjL-Y,698
 cidc_schemas/json_validation.py,sha256=SyZSW7AAS-qlYLUUV_ri4393utkNsDexcWB73rEmFLs,20035
@@ -125,7 +125,7 @@ cidc_schemas/schemas/templates/analyses/wes_analysis_template.json,sha256=V5RRZ3
 cidc_schemas/schemas/templates/analyses/wes_tumor_only_analysis_template.json,sha256=oHQ89pnzqGWE2sfb5sYGYhyknyd0pr0dTEGTYn2y_tQ,16240
 cidc_schemas/schemas/templates/assays/atacseq_fastq_template.json,sha256=7WygawkxnhFu5xBAuIhSOBD8TwCqDgINjC-HIYeCf4Q,3928
 cidc_schemas/schemas/templates/assays/clinical_data_template.json,sha256=1luQXzyqbAKKiNVwVQFeZ4dwzVpnTeGAropzd_mYmx4,2193
-cidc_schemas/schemas/templates/assays/ctdna_template.json,sha256=SNG2TwpAaP2TX1kXf_k2quXhVn3Z2-4rmR3eLaCVF4Q,5966
+cidc_schemas/schemas/templates/assays/ctdna_template.json,sha256=kNDDyRDz_521Snxo21GmhbYLJgGIzM6axRKsbK3JR74,6077
 cidc_schemas/schemas/templates/assays/cytof_template.json,sha256=YGaLt7DKsz32o3na8NDs-bXteVnAPMiF1hLH643f6kY,13328
 cidc_schemas/schemas/templates/assays/elisa_template.json,sha256=Q8cv5ZpaRZUfvr6e4PC4uvMqhhaDGLdvVMN_s8Uiajw,2259
 cidc_schemas/schemas/templates/assays/hande_template.json,sha256=BNMQO4JpBrjuD8ITH1x7cJfkqI4bgKZilvN9yqavaqs,4293
@@ -152,9 +152,9 @@ cidc_schemas/schemas/templates/manifests/tissue_slide_template.json,sha256=sFPyt
 cidc_schemas/schemas/templates/manifests/tumor_normal_pairing_template.json,sha256=lVJrGb28n-vyfjGBzhrzjn1lMKw1b4HXXmWtwA603v0,2797
 cidc_schemas/schemas/templates/manifests/tumor_tissue_dna_template.json,sha256=D4ICMeHQgKXFDwaMOqrcLcUEF-dYGalagGYDUFAploU,13276
 cidc_schemas/schemas/templates/manifests/tumor_tissue_rna_template.json,sha256=MpJTjoaTdIlNBAIIxSfmItVevA5BXnajqu_jaEXxBmo,12568
-nci_cidc_schemas-0.26.32.dist-info/LICENSE,sha256=zK77-w4rYCZBHAYJEGkcFuPXwKIsP7jMPZ2iQOXjzko,1072
-nci_cidc_schemas-0.26.32.dist-info/METADATA,sha256=s6yMbeWZHVyJJer-07tW7vf3rXp4JPKiOU5vk51bLXo,4436
-nci_cidc_schemas-0.26.32.dist-info/WHEEL,sha256=DZajD4pwLWue70CAfc7YaxT1wLUciNBvN_TTcvXpltE,110
-nci_cidc_schemas-0.26.32.dist-info/entry_points.txt,sha256=kSyTzXeJQrJp_2ZX0GS_NnbJR8ceQKLBSgER46PM0hs,55
-nci_cidc_schemas-0.26.32.dist-info/top_level.txt,sha256=Wwb5Cu7QrnbmSJxI2d00e3-Mir36t0jTRnSulmfhi30,13
-nci_cidc_schemas-0.26.32.dist-info/RECORD,,
+nci_cidc_schemas-0.26.34.dist-info/LICENSE,sha256=zK77-w4rYCZBHAYJEGkcFuPXwKIsP7jMPZ2iQOXjzko,1072
+nci_cidc_schemas-0.26.34.dist-info/METADATA,sha256=zdG4Fo50hBiDycEaiq1b3xAA6Stq7B90SS6qLjw51cM,4436
+nci_cidc_schemas-0.26.34.dist-info/WHEEL,sha256=DZajD4pwLWue70CAfc7YaxT1wLUciNBvN_TTcvXpltE,110
+nci_cidc_schemas-0.26.34.dist-info/entry_points.txt,sha256=kSyTzXeJQrJp_2ZX0GS_NnbJR8ceQKLBSgER46PM0hs,55
+nci_cidc_schemas-0.26.34.dist-info/top_level.txt,sha256=Wwb5Cu7QrnbmSJxI2d00e3-Mir36t0jTRnSulmfhi30,13
+nci_cidc_schemas-0.26.34.dist-info/RECORD,,