nci-cidc-schemas 0.26.28__py2.py3-none-any.whl → 0.26.32__py2.py3-none-any.whl

cidc_schemas/__init__.py

@@ -2,4 +2,4 @@
 
 __author__ = """NCI"""
 __email__ = "nci-cidc-tools-admin@mail.nih.gov"
-__version__ = "0.26.28"
+__version__ = "0.26.32"

cidc_schemas/json_validation.py

@@ -110,10 +110,10 @@ class _Validator(jsonschema.Draft7Validator):
                     ref_path_pattern = scope["ref_path_pattern"]
                     # If there are no cached values for this ref path pattern, collect them
                     if ref_path_pattern not in self._in_doc_refs_cache:
-                        self._in_doc_refs_cache[
-                            ref_path_pattern
-                        ] = self._get_values_for_path_pattern(
-                            ref_path_pattern, instance
+                        self._in_doc_refs_cache[ref_path_pattern] = (
+                            self._get_values_for_path_pattern(
+                                ref_path_pattern, instance
+                            )
                         )
 
         # see: https://docs.python.org/3/library/contextlib.html

cidc_schemas/prism/constants.py

@@ -51,6 +51,7 @@ SUPPORTED_ANALYSES = [
     "tcr_analysis",
     "wes_analysis",
     "wes_tumor_only_analysis",
+    "ctdna_analysis",
 ]
 
 SUPPORTED_TEMPLATES = SUPPORTED_ASSAYS + SUPPORTED_MANIFESTS + SUPPORTED_ANALYSES
@@ -62,6 +63,7 @@ ASSAY_TO_FILEPATH: Dict[str, str] = {
     "rna_level1_analysis": "rna/",
     "wes_analysis": "wes/",
     "wes_tumor_only_analysis": "wes_tumor_only/",
+    "ctdna_analysis": "ctdna/",
     # assay specifics removed
     "atacseq_fastq": "atacseq/",
     "rna_bam": "rna/",

cidc_schemas/prism/core.py

@@ -1,4 +1,5 @@
 """Build metadata dictionaries from Excel files."""
+
 import logging
 import base64
 import hmac

cidc_schemas/prism/extra_metadata.py

@@ -1,4 +1,5 @@
 """Parsers for extracting extra metadata from files containing molecular data."""
+
 import logging
 import re
 from codecs import BOM_UTF8

cidc_schemas/prism/pipelines.py

@@ -1,4 +1,5 @@
 """Analysis pipeline configuration generators."""
+
 from collections import defaultdict
 from datetime import datetime
 from io import BytesIO
@@ -15,6 +16,7 @@ from ..util import load_pipeline_config_template, participant_id_from_cimac
 
 logger = logging.getLogger(__file__)
 
+
 # Note, bucket names must be all lowercase, dash, and underscore
 # https://cloud.google.com/storage/docs/naming-buckets#requirements
 def RNA_GOOGLE_BUCKET_PATH_FN(trial_id: str, batch_num: int) -> str:

cidc_schemas/schemas/artifacts/artifact_core.json

@@ -89,6 +89,7 @@
         "JSON",
         "YAML",
         "PDF",
+        "RDATA",
         "[NOT SET]"
       ]
     },

cidc_schemas/schemas/artifacts/artifact_rdata.json

@@ -0,0 +1,51 @@
+{
+  "$schema": "metaschema/strict_meta_schema.json#",
+  "$id": "rdata_artifact",
+  "title": "RData Artifact",
+  "type": "object",
+  "description": "Information about a rdata file.",
+  "additionalProperties": false,
+  "properties": {
+    "data_format": {
+      "description": "Data format.",
+      "const": "RDATA"
+    },
+    "upload_placeholder": {
+      "$ref": "artifacts/artifact_core.json#properties/upload_placeholder"
+    },
+    "artifact_creator": {
+      "$ref": "artifacts/artifact_core.json#properties/artifact_creator"
+    },
+    "uploader": { "$ref": "artifacts/artifact_core.json#properties/uploader" },
+    "uuid": { "$ref": "artifacts/artifact_core.json#properties/uuid" },
+    "file_name": {
+      "$ref": "artifacts/artifact_core.json#properties/file_name"
+    },
+    "object_url": {
+      "$ref": "artifacts/artifact_core.json#properties/object_url"
+    },
+    "uploaded_timestamp": {
+      "$ref": "artifacts/artifact_core.json#properties/uploaded_timestamp"
+    },
+    "file_size_bytes": {
+      "$ref": "artifacts/artifact_core.json#properties/file_size_bytes"
+    },
+    "md5_hash": { "$ref": "artifacts/artifact_core.json#properties/md5_hash" },
+    "crc32c_hash": {
+      "$ref": "artifacts/artifact_core.json#properties/crc32c_hash"
+    },
+    "visible": { "$ref": "artifacts/artifact_core.json#properties/visible" },
+    "artifact_category": {
+      "$ref": "artifacts/artifact_core.json#properties/artifact_category"
+    },
+    "facet_group": {
+      "$ref": "artifacts/artifact_core.json#properties/facet_group"
+    }
+  },
+  "allOf": [
+    {
+      "$ref": "artifacts/artifact_core.json"
+    }
+  ],
+  "mergeStrategy": "objectMerge"
+}

cidc_schemas/schemas/assays/components/available_ngs_analyses.json

@@ -13,6 +13,9 @@
     "wes_tumor_only_analysis": {
       "$ref": "assays/wes_tumor_only_analysis.json"
     },
+    "ctdna_analysis": {
+      "$ref": "assays/ctdna_analysis.json"
+    },
     "wes_analysis_old": {
       "$ref": "assays/wes_analysis.json"
     },

cidc_schemas/schemas/assays/ctdna_analysis.json

@@ -0,0 +1,52 @@
+{
+  "$schema": "metaschema/strict_meta_schema.json#",
+  "$id": "ctdna_analysis",
+  "title": "ctDNA analysis",
+  "type": "object",
+  "description": "Combined analysis files for the ctDNA assay.",
+
+  "definitions": {
+    "sample_analysis": {
+      "type": "object",
+      "description": "ctDNA assay output files for a tumor normal pair of samples.",
+
+      "required": [
+        "run_id",
+        "tumor"
+      ],
+      "additionalProperties": false,
+      "properties": {
+        "run_id": {
+          "type": "string",
+          "description": "An id used as if this was a paired analysis run."
+        },
+        "error": { "$ref": "assays/wes_core.json#properties/error" },
+        "tumor": { "$ref": "assays/wes_assay.json#definitions/sample_analysis" },
+        "comments": {
+          "type": "string",
+          "description": "Comments on the tumor-only analysis run."
+        }
+      }
+    }
+  },
+
+  "required": [],
+  "additionalProperties": false,
+  "properties": {
+    "runs": {
+      "type": "array",
+      "items": {
+        "$ref": "assays/ctdna_analysis.json#definitions/sample_analysis"
+      },
+      "mergeStrategy": "arrayMergeById",
+      "mergeOptions": {
+        "$comment": "TODO fix to merge by a pair of normal and tumor ids. It requires improvements to the merge strategy code.",
+        "idRef": "/run_id"
+      }
+    },
+    "batch_id": {"$ref": "assays/tcr_assay.json#properties/batch_id"},
+    "excluded_samples": {
+      "$ref": "assays/components/excluded_samples.json"
+    }
+  }
+}

cidc_schemas/schemas/assays/ctdna_assay.json

@@ -41,6 +41,9 @@
 				"bias_qc_plots": {"$ref": "artifacts/artifact_pdf.json"},
 				"optimal_solution": {"$ref": "artifacts/artifact_zip.json"},
 				"other_solutions": {"$ref": "artifacts/artifact_zip.json"},
+				"on_premise_corrected_depth_file": {"$ref": "artifacts/artifact_text.json"},
+				"on_premise_parameters_file": {"$ref": "artifacts/artifact_text.json"},
+				"on_premise_rdata_file": {"$ref": "artifacts/artifact_rdata.json"},
 
 				"fraction_cna_subclonal": {
 					"description": "Fraction of copy number altered bins that are subclonal. Accepts NaN. (0-1)",

cidc_schemas/schemas/assays/ihc_assay.json

@@ -129,7 +129,8 @@
             "enum": [
                 "Vectra 2.0",
                 "Hamamatsu",
-                "AT2 Turbo"
+                "AT2 Turbo",
+                "Akoya PhenoImager HT"
             ]
         },
         "staining_platform": {
@@ -171,4 +172,4 @@
         "records"
     ],
     "mergeStrategy": "objectMerge"
-}
+}

cidc_schemas/schemas/templates/analyses/ctdna_analysis_template.json

@@ -0,0 +1,121 @@
+{
+    "title": "ctDNA analysis template",
+    "description": "ctDNA analysis submission.",
+    "prism_template_root_object_schema": "assays/ctdna_analysis.json",
+    "prism_template_root_object_pointer": "/analysis/ctdna_analysis",
+    "properties": {
+        "worksheets": {
+            "ctDNA Analysis": {
+                "preamble_rows": {
+                    "protocol identifier": {
+                        "merge_pointer": "2/protocol_identifier",
+                        "type_ref": "clinical_trial.json#properties/protocol_identifier"
+                    },
+                    "folder": {
+                        "do_not_merge": true,
+                        "type": "string",
+                        "allow_empty": true
+                    },
+                    "batch id": {
+                        "merge_pointer": "0/batch_id",
+                        "type_ref": "assays/tcr_assay.json#properties/batch_id"
+                    }
+                },
+                "prism_data_object_pointer": "/runs/-",
+                "data_columns": {
+                    "ctDNA Runs": {
+                        "run id": {
+                            "merge_pointer": "/run_id",
+                            "type_ref": "assays/ctdna_analysis.json#definitions/sample_analysis/properties/run_id",
+                            "process_as": [
+                                {
+                                    "parse_through": "lambda run: f'{folder or \"\"}analysis/{run}_error.yaml'",
+                                    "merge_pointer": "/error",
+                                    "gcs_uri_format": "{protocol identifier}/ctdna/{run id}/analysis/error.yaml",
+                                    "type_ref": "assays/components/local_file.json#properties/file_path",
+                                    "is_artifact": 1,
+                                    "allow_empty": true
+                                }
+                            ]
+                        },
+                        "cimac id": {
+                            "merge_pointer": "/tumor/cimac_id",
+                            "type_ref": "sample.json#properties/cimac_id",
+                            "process_as": [
+                                {
+                                    "parse_through": "lambda id: f'{folder or \"\"}analysis/align/{id}/{id}.sorted.dedup.bam'",
+                                    "merge_pointer": "/tumor/alignment/align_sorted_dedup",
+                                    "gcs_uri_format": "{protocol identifier}/ctdna/{run id}/analysis/tumor/{cimac id}/sorted.dedup.bam",
+                                    "type_ref": "assays/components/local_file.json#properties/file_path",
+                                    "is_artifact": 1
+                                },
+                                {
+                                    "parse_through": "lambda id: f'{folder or \"\"}analysis/align/{id}/{id}.sorted.dedup.bam.bai'",
+                                    "merge_pointer": "/tumor/alignment/align_sorted_dedup_index",
+                                    "gcs_uri_format": "{protocol identifier}/ctdna/{run id}/analysis/tumor/{cimac id}/sorted.dedup.bam.bai",
+                                    "type_ref": "assays/components/local_file.json#properties/file_path",
+                                    "is_artifact": 1
+                                },
+                                {
+                                    "parse_through": "lambda id: f'{folder or \"\"}analysis/align/{id}/{id}_recalibrated.bam'",
+                                    "merge_pointer": "/tumor/alignment/align_recalibrated",
+                                    "gcs_uri_format": "{protocol identifier}/ctdna/{run id}/analysis/tumor/{cimac id}/recalibrated.bam",
+                                    "type_ref": "assays/components/local_file.json#properties/file_path",
+                                    "is_artifact": 1
+                                },
+                                {
+                                    "parse_through": "lambda id: f'{folder or \"\"}analysis/align/{id}/{id}_recalibrated.bam.bai'",
+                                    "merge_pointer": "/tumor/alignment/align_recalibrated_index",
+                                    "gcs_uri_format": "{protocol identifier}/ctdna/{run id}/analysis/tumor/{cimac id}/recalibrated.bam.bai",
+                                    "type_ref": "assays/components/local_file.json#properties/file_path",
+                                    "is_artifact": 1
+                                },
+                                {
+                                    "parse_through": "lambda id: f'{folder or \"\"}analysis/hlahd/{id}/result/{id}_final.result.txt'",
+                                    "merge_pointer": "/tumor/hla/hla_final_result",
+                                    "gcs_uri_format": "{protocol identifier}/ctdna/{run id}/analysis/tumor/{cimac id}/hla_final_result.txt",
+                                    "type_ref": "assays/components/local_file.json#properties/file_path",
+                                    "is_artifact": 1
+                                },
+                                {
+                                    "parse_through": "lambda id: f'{folder or \"\"}analysis/optitype/{id}/{id}_result.tsv'",
+                                    "merge_pointer": "/tumor/hla/optitype_result",
+                                    "gcs_uri_format": "{protocol identifier}/ctdna/{run id}/analysis/tumor/{cimac id}/optitype_result.tsv",
+                                    "type_ref": "assays/components/local_file.json#properties/file_path",
+                                    "is_artifact": 1
+                                },
+                                {
+                                    "parse_through": "lambda id: f'{folder or \"\"}analysis/xhla/{id}/report-{id}-hla.json'",
+                                    "merge_pointer": "/tumor/hla/xhla_report_hla",
+                                    "gcs_uri_format": "{protocol identifier}/ctdna/{run id}/analysis/tumor/{cimac id}/xhla_report_hla.json",
+                                    "type_ref": "assays/components/local_file.json#properties/file_path",
+                                    "is_artifact": 1
+                                }
+                            ]
+                        },
+                        "comments": {
+                            "type_ref": "assays/ctdna_analysis.json#definitions/sample_analysis/properties/comments",
+                            "merge_pointer": "0/comments",
+                            "allow_empty": true
+                        }
+                    }
+                }
+            },
+            "Excluded Samples": {
+                "prism_data_object_pointer": "/excluded_samples/-",
+                "data_columns": {
+                    "Samples Excluded From Analysis": {
+                        "cimac id": {
+                            "type_ref": "sample.json#properties/cimac_id",
+                            "merge_pointer": "0/cimac_id"
+                        },
+                        "reason": {
+                            "type_ref": "assays/components/excluded_samples.json#items/properties/reason_excluded",
+                            "merge_pointer": "0/reason_excluded"
+                        }
+                    }
+                }
+            }
+        }
+    }
+}

cidc_schemas/schemas/templates/assays/ctdna_template.json

@@ -93,6 +93,24 @@
                 "merge_pointer": "0/tumor_fraction",
                 "type_ref": "assays/ctdna_assay.json#definitions/entry/properties/tumor_fraction"
             },
+            "on premise corrected depth file": {
+                "merge_pointer": "0/on_premise_corrected_depth_file",
+                "type_ref": "assays/components/local_file.json#properties/file_path",
+                "is_artifact": 1,
+                "gcs_uri_format": "{protocol identifier}/ctdna/{batch id}/{cimac id}/OnPrem.correctedDepth.txt"
+            },
+            "on premise parameters file": {
+                "merge_pointer": "0/on_premise_parameters_file",
+                "type_ref": "assays/components/local_file.json#properties/file_path",
+                "is_artifact": 1,
+                "gcs_uri_format": "{protocol identifier}/ctdna/{batch id}/{cimac id}/OnPrem.params.txt"
+            },
+            "on premise rdata file": {
+                "merge_pointer": "0/on_premise_rdata_file",
+                "type_ref": "assays/components/local_file.json#properties/file_path",
+                "is_artifact": 1,
+                "gcs_uri_format": "{protocol identifier}/ctdna/{batch id}/{cimac id}/OnPrem.RData"
+            },
             "comments": {
                 "type_ref": "assays/ctdna_assay.json#definitions/entry/properties/comments",
                 "merge_pointer": "0/comments",

cidc_schemas/template.py

@@ -232,6 +232,7 @@ def _initialize_template_schema(name: str, title: str, pointer: str):
         "rna": "RNA sequencing Level 1",
         "wes": "Whole Exome Sequencing (WES) Tumor-Normal Paired",
         "wes_tumor_only": "Whole Exome Sequencing (WES) Tumor-Only",
+        "ctDNA": "ctDNA",
     }[name]
 
     # static
@@ -419,6 +420,7 @@ def _convert_api_to_template(name: str, schema: dict, assay_schema: dict):
         "rna": "RNAseq level 1",
         "wes": "WES",
         "wes_tumor_only": "WES tumor-only",
+        "ctdna": "ctDNA",
     }[name]
 
     pointer = [
@@ -825,7 +827,7 @@ class _FieldDef(NamedTuple):
                     uuid=file_uuid,
                     format_context=dict(
                         format_context,
-                        num=num  # add num to be able to generate
+                        num=num,  # add num to be able to generate
                         # different gcs keys for each multi-artifact file.
                     ),
                 )
@@ -1002,9 +1004,9 @@ class Template:
                     data_schemas[table_name] = process_fields(table_schema)
                 processed_worksheet[section_name] = data_schemas
             elif section_name == "prism_arbitrary_data_merge_pointer":
-                processed_worksheet[
-                    "prism_arbitrary_data_merge_pointer"
-                ] = section_schema
+                processed_worksheet["prism_arbitrary_data_merge_pointer"] = (
+                    section_schema
+                )
 
         return processed_worksheet
 

cidc_schemas/unprism.py

@@ -1,4 +1,5 @@
 """Tools from extracting information from trial metadata blobs."""
+
 from io import StringIO, BytesIO
 from typing import Callable, Dict, List, NamedTuple, Optional, Union
 

{nci_cidc_schemas-0.26.28.dist-info → nci_cidc_schemas-0.26.32.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: nci_cidc_schemas
-Version: 0.26.28
+Version: 0.26.32
 Summary: The CIDC data model and tools for working with it.
 Home-page: https://github.com/NCI-CIDC/cidc-schemas
 Author: NCI
@@ -12,22 +12,22 @@ Classifier: Intended Audience :: Developers
 Classifier: License :: OSI Approved :: MIT License
 Classifier: Natural Language :: English
 Classifier: Programming Language :: Python :: 3.9
-Requires-Python: >=3.9,<3.10
+Requires-Python: >=3.9,<3.11
 Description-Content-Type: text/markdown
 License-File: LICENSE
 Requires-Dist: dateparser ==1.1.4
 Requires-Dist: xlsxwriter ==1.1.6
 Requires-Dist: argparse ==1.1
-Requires-Dist: pyyaml ==5.3.1
+Requires-Dist: pyyaml ==6.0.1
 Requires-Dist: jsonschema ==3.0.1
 Requires-Dist: openpyxl ==3.0.7
 Requires-Dist: jsonmerge ==1.6.1
 Requires-Dist: deepdiff ~=4.3.0
 Requires-Dist: jsonpointer ==2.0
 Requires-Dist: pandas ==1.2.4
-Requires-Dist: jinja2 ~=3.0.3
+Requires-Dist: jinja2 ~=3.1.3
 Requires-Dist: nci-cidc-ngs-pipeline-api ==0.1.25
-Requires-Dist: markupsafe ==2.0.1
+Requires-Dist: markupsafe ==2.1.5
 Requires-Dist: regex ==2022.3.2
 
 # cidc-schemas

{nci_cidc_schemas-0.26.28.dist-info → nci_cidc_schemas-0.26.32.dist-info}/RECORD

@@ -1,21 +1,21 @@
-cidc_schemas/__init__.py,sha256=VDltfPXetsJ2f1wsDpkHF8_2xrnZBs2LEiw3dbrQcqo,136
+cidc_schemas/__init__.py,sha256=pG73BM0fkcKpH1I0RlSniRM-l2wAhEnNwWYyrochnhY,136
 cidc_schemas/cli.py,sha256=gWiktRlraNH8Q0zNUae9dohKjPwBmcY0BJwdcQ_fIic,4099
 cidc_schemas/constants.py,sha256=RULs7pGuBAVq1teXymrfbVsK23ZowJvLuZlv0KcjL-Y,698
-cidc_schemas/json_validation.py,sha256=h9maP1xicHmboF86DAwSp9dJzEGOF-cDysPKheloo_k,20025
+cidc_schemas/json_validation.py,sha256=SyZSW7AAS-qlYLUUV_ri4393utkNsDexcWB73rEmFLs,20035
 cidc_schemas/migrations.py,sha256=Amg_T4cFgMzySD7yNnT_PWpqP7hwlTWGeHlI_RSXuRI,14766
-cidc_schemas/template.py,sha256=P_7zS6OEuuVfofg7IF8-VSFZknjOgPWsIBytFOYuGGE,49836
+cidc_schemas/template.py,sha256=J41S65-2w4VdmpLDVY-icyHWAsbH1Gtg-pMlL_TGo6A,49891
 cidc_schemas/template_reader.py,sha256=xXtLRKu1y4FrPj8RgyGOmB2hlsCDXcuvMBWami2_jV8,13119
 cidc_schemas/template_writer.py,sha256=faOhvSDTp4nuPhOtVQR_J7YNnFzx-vh7oyNpFdee1mY,18236
-cidc_schemas/unprism.py,sha256=9VIuY4ItfSnT8zTC0f4nB1KMUbK2HEPeXaq9EDAtMOA,13324
+cidc_schemas/unprism.py,sha256=5EeqNKedVEf15CJiMQ-ImXd1wIbNnzihv21rAMClZyc,13325
 cidc_schemas/util.py,sha256=ZCQ--ROZyXYVB034fHHmxZXb5F0G2GwzPwSfyfegtGk,4348
 cidc_schemas/metaschema/strict_meta_schema.json,sha256=3FiS0r2dAXgfPsruJwZYbQoQnHhC_yl-3mclX8gfiQU,6428
 cidc_schemas/pipeline_configs/rna_level1_analysis_config.yaml.j2,sha256=6no9sFqwzb1T61RZGD-owDt2K5R8G_fPTzflV4fOroo,2832
 cidc_schemas/prism/__init__.py,sha256=J5Tj0X7Di6cyxAjaduOUp2aVyvl8UI67bgxEkgttvcU,530
-cidc_schemas/prism/constants.py,sha256=b5pgxrzwJvKWWIEE9V72cvKwl_ARRaANPHzKk4yo4M4,2325
-cidc_schemas/prism/core.py,sha256=99i6zO2p0mQOVprWJBzC9HE4_C6JH2SvNbQ2FCKXxGQ,19293
-cidc_schemas/prism/extra_metadata.py,sha256=zHDmsl-xEbi6HXT7Qaj1XW5V8ONGnaHOwPIXbfmJcLw,8558
+cidc_schemas/prism/constants.py,sha256=fFiXfFFMiGqG07mKlt_ejcRZrnMD6g66pwnB6s4Dfgk,2379
+cidc_schemas/prism/core.py,sha256=PQgsRAEleT6gO3VyE4uFTYa3qK_VXjFcErV1YwWV1nQ,19294
+cidc_schemas/prism/extra_metadata.py,sha256=wZjhUGKSvfupr6qZ1WuPepKnf_FG1nGfsDai_kBFZ50,8559
 cidc_schemas/prism/merger.py,sha256=Kf5o9NWT80XqYZASbH0dJsQ0dkwMl3HtoR_p7wqUypI,12431
-cidc_schemas/prism/pipelines.py,sha256=83bViGnAYgaQTme8Af9BpsYTz1QiFwb__bJmf0tLFWw,33530
+cidc_schemas/prism/pipelines.py,sha256=x_qxZ2Xq2pX30gSFW_w-hwUlaUz29lQ-hByM8h0_tao,33532
 cidc_schemas/schemas/aliquot.json,sha256=F24s6xGTeJl-VT6s6wvV8YtMA4O-0BsUCwtD2OEx_cY,1943
 cidc_schemas/schemas/clinical_data.json,sha256=ubt2dqTLCbDuxuOXrBObT_xLHVSArMBx4oASFOAYEas,1474
 cidc_schemas/schemas/clinical_trial.json,sha256=mqvpCTqWGimKA8-S4F32YMDBoHcJkawpr9iTwUgH56w,4652
@@ -32,7 +32,7 @@ cidc_schemas/schemas/artifacts/artifact_clinical_docx.json,sha256=9Lbq9H0mhPIRDA
 cidc_schemas/schemas/artifacts/artifact_clinical_xlsx.json,sha256=IOQD7NBS3lvJV2Dts0Z6y0QoyYeB2jc2OLFgjSSTEn4,2232
 cidc_schemas/schemas/artifacts/artifact_cncf.json,sha256=IrawYPFqZ4HV0bClCKgOpO8Xh6d2GD8rP7tjS5ASv_o,1657
 cidc_schemas/schemas/artifacts/artifact_cns.json,sha256=R9RItkDV_kqnfLqr-WBa7yJmeDc2kblJg3xx7hNjtAk,1653
-cidc_schemas/schemas/artifacts/artifact_core.json,sha256=bCy31z6QN-pzSLRY59uO_kzwLDcEz0YxFhD7cL4SuuE,3123
+cidc_schemas/schemas/artifacts/artifact_core.json,sha256=Fmm6LSnEBzEutpXtTpB3pQgzObCXl4Ymu9BbvN_5aHM,3140
 cidc_schemas/schemas/artifacts/artifact_csv.json,sha256=BPqogQ3DMjyRs9N-sk9c1Q7gKTNumOHhhwwn5gCHbGM,1665
 cidc_schemas/schemas/artifacts/artifact_elisa_xlsx.json,sha256=1Erw2HG4YJPiNop40hs9LigHr7O66_WRlrZ3wWSQzBs,2216
 cidc_schemas/schemas/artifacts/artifact_fastq_gz.json,sha256=k8So4mBtC7YWp6-PSeCKNvp3v0MNPNfdPWRQWoASNvA,1683
@@ -50,6 +50,7 @@ cidc_schemas/schemas/artifacts/artifact_npx.json,sha256=I0o8C9ilOrbLBmLpTOQ1ARFy
 cidc_schemas/schemas/artifacts/artifact_pdf.json,sha256=t-RR4gftGD-wjB7t40lb1TbnKLosPQCDyP-SL1V5dWc,1674
 cidc_schemas/schemas/artifacts/artifact_png.json,sha256=cGzHZQg3qbungIkxvLh6TY8iqKjtutBU2XmBnRyiijQ,1653
 cidc_schemas/schemas/artifacts/artifact_rcc.json,sha256=IyqqsxPdFZjRoFuBpnkBKBLbc-SoWvrQoqFWeNLU_as,1704
+cidc_schemas/schemas/artifacts/artifact_rdata.json,sha256=rnaukVGTKrqJAW9aLEyITTTOZnMB3mbZ1T76BbhokpA,1661
 cidc_schemas/schemas/artifacts/artifact_tbi.json,sha256=FXZyiAeU6ot-gR-ML8iDi7zcFa0UwkO8Ym-ip4yAEm4,1661
 cidc_schemas/schemas/artifacts/artifact_text.json,sha256=8srLHRfM3g9EyxgNgdANZy8C13xcnkby8amM01dDFhc,1657
 cidc_schemas/schemas/artifacts/artifact_tsv.json,sha256=ITRJhHOWTeSmutQOrFZ4hzyWQ7XWUev7rT-LMhfUp6E,1663
@@ -59,12 +60,13 @@ cidc_schemas/schemas/artifacts/artifact_xlsx.json,sha256=PmQ3NY_8ywS3iFa4vvLzcXb
 cidc_schemas/schemas/artifacts/artifact_yaml.json,sha256=Eey5T68k4jXqiFXfgWTVi3ZoiY5EZxc75rWCEvaZscE,1657
 cidc_schemas/schemas/artifacts/artifact_zip.json,sha256=L9TyKfKm2j0jUo7ED7Lb43Z6VRHP7hEirC349viEBhQ,1653
 cidc_schemas/schemas/assays/atacseq_assay.json,sha256=5ezVeJmrwOWuXLtf9-gH8iYKhLCys9Ii2VamezNI_hM,2547
-cidc_schemas/schemas/assays/ctdna_assay.json,sha256=BfQSIMC9oNrm_e1lz3juNSjA1JsKAu2uDgVHNpnvtB8,3274
+cidc_schemas/schemas/assays/ctdna_analysis.json,sha256=8HTya0iwtxle0myQ4Dj6VaTII0RuqqiR14SUrmPKPAM,1513
+cidc_schemas/schemas/assays/ctdna_assay.json,sha256=1AwUYiE93XEVDg_FPFyV2OgaD7Ry7pWoD4AH2DAXasA,3503
 cidc_schemas/schemas/assays/cytof_assay.json,sha256=rf0vebcoHY_dS4wlqkoBY9rclSAE3CRdxeGLXAbhScM,3659
 cidc_schemas/schemas/assays/cytof_assay_core.json,sha256=Vwg3RmEEdCpZtDDaVAWBDCKTMnSxagsdqSJq4AiDu9w,8828
 cidc_schemas/schemas/assays/elisa_assay.json,sha256=YHeoxYmgdpefLWkBXNg60JUig2Ccqg8thWZ5M5q3hyw,2233
 cidc_schemas/schemas/assays/hande_assay.json,sha256=NhLyBiBOgeZ9woeGO4EEIod-y_Wzz6WamsP3ZNzxtS0,3192
-cidc_schemas/schemas/assays/ihc_assay.json,sha256=lD4T8sK1yox-3ZRzSFxUhAo12MyZBgJs5D9vHnX9ccA,6697
+cidc_schemas/schemas/assays/ihc_assay.json,sha256=g1WuTUrN6M3mmQL7TCURsKL442An8jlmXaxddg2Ayak,6738
 cidc_schemas/schemas/assays/mibi_assay.json,sha256=gxUdCKzsNpL5FB8muT8Gq-3cqbOTGiOax-kFjI4myCA,4187
 cidc_schemas/schemas/assays/microbiome_assay.json,sha256=4eSEKRylf86yLV7QKCIlMzzjj_XHKMfQpA0njLHBs00,2078
 cidc_schemas/schemas/assays/mif_assay.json,sha256=IG-s80kl8PUUi4U6FGmJbziG0nJf5Or_WTzfb5d46uQ,2599
@@ -82,7 +84,7 @@ cidc_schemas/schemas/assays/wes_tumor_only_analysis.json,sha256=dU3oaeBbPnEv2Xjy
 cidc_schemas/schemas/assays/components/antibody.json,sha256=vfLxXkXIcaJ1BXeUjCaJehrRCdVrBW3gxibwrD7zzd4,960
 cidc_schemas/schemas/assays/components/assay_core.json,sha256=QGuLiArVb7lEF2t1Ml4Qt7g4SXY58WuGBPFVgvOLI5w,485
 cidc_schemas/schemas/assays/components/available_assays.json,sha256=RiyOd6-awMmELxYj-UbAo5dQxQv_rEMI3TuYAk4TCiU,3540
-cidc_schemas/schemas/assays/components/available_ngs_analyses.json,sha256=dmC10wI7roGVwbf5T8DxIW1geIjks-Sl-GHJkJXc6eQ,1163
+cidc_schemas/schemas/assays/components/available_ngs_analyses.json,sha256=-827aY2HoYDWc_zjqEBFCqPH6DFgSqFRberrn7E96zc,1237
 cidc_schemas/schemas/assays/components/composite_image.json,sha256=k9EaBG3y9j-lvg3nQNZbfVpo9fK_gUz1-9iTwjlTDfE,733
 cidc_schemas/schemas/assays/components/controls.json,sha256=_Wxz7W2msTGJ2Ei4XZg0Qy1t8A5_rLSHNvdPurC073E,458
 cidc_schemas/schemas/assays/components/enrichment_core.json,sha256=zC5G7q-QyNrdynCOoPCCSfOuSKq8TiDH-Pl6gITNfVQ,813
@@ -115,6 +117,7 @@ cidc_schemas/schemas/assays/components/ngs/rna/salmon.json,sha256=GRJaC4MhupuRrE
 cidc_schemas/schemas/assays/components/ngs/rna/star.json,sha256=XoL1Ro8YDr-ZQQOmYZC8NnREDW-7qzR6IzJi3tLQ2ks,772
 cidc_schemas/schemas/assays/components/ngs/rna/trust4.json,sha256=o-fxkTL-1Tho1kPkJ6CcMUp5kE5mnkZU8cdSCzHR5cQ,382
 cidc_schemas/schemas/templates/analyses/atacseq_analysis_template.json,sha256=7vBdwVD6HEd9Pj8AkEoa34fQjIynztsNaKvfn2KoFFc,5403
+cidc_schemas/schemas/templates/analyses/ctdna_analysis_template.json,sha256=WSuNoR4cFoYOH3_VHD0FY0m8TD578Yl6MSESQPMDMQo,7408
 cidc_schemas/schemas/templates/analyses/cytof_analysis_template.json,sha256=d6qOGbYXXx1c8rb-saM4D_tMuK8n4ydbyW9_xaW6xhk,6381
 cidc_schemas/schemas/templates/analyses/rna_level1_analysis_template.json,sha256=vMHXSQNZz8sFxwiBUnRXb5o08GxgbKZjMu8ZPjNn4TI,15944
 cidc_schemas/schemas/templates/analyses/tcr_analysis_template.json,sha256=ai5KUp6q5GGTxDybOHBaseOnvQCVqIRh4SurETz5Vx0,3054
@@ -122,7 +125,7 @@ cidc_schemas/schemas/templates/analyses/wes_analysis_template.json,sha256=V5RRZ3
 cidc_schemas/schemas/templates/analyses/wes_tumor_only_analysis_template.json,sha256=oHQ89pnzqGWE2sfb5sYGYhyknyd0pr0dTEGTYn2y_tQ,16240
 cidc_schemas/schemas/templates/assays/atacseq_fastq_template.json,sha256=7WygawkxnhFu5xBAuIhSOBD8TwCqDgINjC-HIYeCf4Q,3928
 cidc_schemas/schemas/templates/assays/clinical_data_template.json,sha256=1luQXzyqbAKKiNVwVQFeZ4dwzVpnTeGAropzd_mYmx4,2193
-cidc_schemas/schemas/templates/assays/ctdna_template.json,sha256=XUGwEULvSLgtDvJUloz8BA1AHS_rRtziphV4ll34tus,4919
+cidc_schemas/schemas/templates/assays/ctdna_template.json,sha256=SNG2TwpAaP2TX1kXf_k2quXhVn3Z2-4rmR3eLaCVF4Q,5966
 cidc_schemas/schemas/templates/assays/cytof_template.json,sha256=YGaLt7DKsz32o3na8NDs-bXteVnAPMiF1hLH643f6kY,13328
 cidc_schemas/schemas/templates/assays/elisa_template.json,sha256=Q8cv5ZpaRZUfvr6e4PC4uvMqhhaDGLdvVMN_s8Uiajw,2259
 cidc_schemas/schemas/templates/assays/hande_template.json,sha256=BNMQO4JpBrjuD8ITH1x7cJfkqI4bgKZilvN9yqavaqs,4293
@@ -149,9 +152,9 @@ cidc_schemas/schemas/templates/manifests/tissue_slide_template.json,sha256=sFPyt
 cidc_schemas/schemas/templates/manifests/tumor_normal_pairing_template.json,sha256=lVJrGb28n-vyfjGBzhrzjn1lMKw1b4HXXmWtwA603v0,2797
 cidc_schemas/schemas/templates/manifests/tumor_tissue_dna_template.json,sha256=D4ICMeHQgKXFDwaMOqrcLcUEF-dYGalagGYDUFAploU,13276
 cidc_schemas/schemas/templates/manifests/tumor_tissue_rna_template.json,sha256=MpJTjoaTdIlNBAIIxSfmItVevA5BXnajqu_jaEXxBmo,12568
-nci_cidc_schemas-0.26.28.dist-info/LICENSE,sha256=zK77-w4rYCZBHAYJEGkcFuPXwKIsP7jMPZ2iQOXjzko,1072
-nci_cidc_schemas-0.26.28.dist-info/METADATA,sha256=wQEPuXJ6VyZ5eJCbJXYWZRZAXOGZGYR6s9KU2n8aDm8,4436
-nci_cidc_schemas-0.26.28.dist-info/WHEEL,sha256=-G_t0oGuE7UD0DrSpVZnq1hHMBV9DD2XkS5v7XpmTnk,110
-nci_cidc_schemas-0.26.28.dist-info/entry_points.txt,sha256=kSyTzXeJQrJp_2ZX0GS_NnbJR8ceQKLBSgER46PM0hs,55
-nci_cidc_schemas-0.26.28.dist-info/top_level.txt,sha256=Wwb5Cu7QrnbmSJxI2d00e3-Mir36t0jTRnSulmfhi30,13
-nci_cidc_schemas-0.26.28.dist-info/RECORD,,
+nci_cidc_schemas-0.26.32.dist-info/LICENSE,sha256=zK77-w4rYCZBHAYJEGkcFuPXwKIsP7jMPZ2iQOXjzko,1072
+nci_cidc_schemas-0.26.32.dist-info/METADATA,sha256=s6yMbeWZHVyJJer-07tW7vf3rXp4JPKiOU5vk51bLXo,4436
+nci_cidc_schemas-0.26.32.dist-info/WHEEL,sha256=DZajD4pwLWue70CAfc7YaxT1wLUciNBvN_TTcvXpltE,110
+nci_cidc_schemas-0.26.32.dist-info/entry_points.txt,sha256=kSyTzXeJQrJp_2ZX0GS_NnbJR8ceQKLBSgER46PM0hs,55
+nci_cidc_schemas-0.26.32.dist-info/top_level.txt,sha256=Wwb5Cu7QrnbmSJxI2d00e3-Mir36t0jTRnSulmfhi30,13
+nci_cidc_schemas-0.26.32.dist-info/RECORD,,

{nci_cidc_schemas-0.26.28.dist-info → nci_cidc_schemas-0.26.32.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.42.0)
+Generator: bdist_wheel (0.43.0)
 Root-Is-Purelib: true
 Tag: py2-none-any
 Tag: py3-none-any