nci-cidc-api-modules 1.2.45__py3-none-any.whl → 1.2.47__py3-none-any.whl

boot.py

@@ -0,0 +1,14 @@
+from os import mkdir, path
+import shutil
+
+TEMPLATES_DIR = path.join("/tmp", "templates")
+
+
+# set up the directories for holding generated templates
+def set_up_templates_directories():
+    if path.exists(TEMPLATES_DIR):
+        shutil.rmtree(TEMPLATES_DIR)
+    mkdir(TEMPLATES_DIR)
+    for family in ["assays", "manifests", "analyses"]:
+        family_dir = path.join(TEMPLATES_DIR, family)
+        mkdir(family_dir)

cidc_api/__init__.py

@@ -1 +1 @@
-__version__ = "1.2.45"
+__version__ = "1.2.47"

cidc_api/config/settings.py

@@ -5,11 +5,11 @@ Any 'UPPER_CASE' variables will be exported as a key-value pair
 in the `SETTINGS` dictionary defined at the bottom of this file.
 """
 
-import shutil
-from os import environ, path, mkdir
+from os import environ, path
 
 from dotenv import load_dotenv
 
+from boot import TEMPLATES_DIR as templates_dir
 from .db import get_sqlalchemy_database_uri, cloud_connector
 from .secrets import get_secrets_manager
 
@@ -36,14 +36,7 @@ PAGINATION_PAGE_SIZE = 25
 MAX_PAGINATION_PAGE_SIZE = 200
 INACTIVE_USER_DAYS = 60
 MAX_THREADPOOL_WORKERS = 32
-TEMPLATES_DIR = path.join("/tmp", "templates")
-# Also, set up the directories for holding generated templates
-if path.exists(TEMPLATES_DIR):
-    shutil.rmtree(TEMPLATES_DIR)
-mkdir(TEMPLATES_DIR)
-for family in ["assays", "manifests", "analyses"]:
-    family_dir = path.join(TEMPLATES_DIR, family)
-    mkdir(family_dir)
+TEMPLATES_DIR = templates_dir
 
 ### Configure prism encrypt ###
 if not TESTING:

{nci_cidc_api_modules-1.2.45.dist-info → nci_cidc_api_modules-1.2.47.dist-info}/METADATA

@@ -1,30 +1,31 @@
 Metadata-Version: 2.4
 Name: nci_cidc_api_modules
-Version: 1.2.45
+Version: 1.2.47
 Summary: SQLAlchemy data models and configuration tools used in the NCI CIDC API
 Home-page: https://github.com/NCI-CIDC/cidc-api-gae
 License: MIT license
 Requires-Python: >=3.13
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: certifi>=2025.11.12
-Requires-Dist: cloud-sql-python-connector[pg8000]>=1.19.0
+Requires-Dist: cachetools>=6.2.4
+Requires-Dist: certifi>=2026.1.4
+Requires-Dist: cloud-sql-python-connector[pg8000]>=1.20.0
 Requires-Dist: flask>=3.1.2
 Requires-Dist: flask-migrate>=4.1.0
 Requires-Dist: flask-sqlalchemy>=3.1.1
 Requires-Dist: flask-talisman>=0.7.0
 Requires-Dist: gcloud-aio-storage~=9.6.1
-Requires-Dist: google-auth==2.45.0
-Requires-Dist: google-api-python-client>=2.187.0
-Requires-Dist: google-cloud-bigquery>=3.39.0
+Requires-Dist: google-api-python-client>=2.188.0
+Requires-Dist: google-auth==2.47.0
+Requires-Dist: google-cloud-bigquery>=3.40.0
 Requires-Dist: google-cloud-pubsub>=2.34.0
 Requires-Dist: google-cloud-secret-manager>=2.26.0
-Requires-Dist: google-cloud-storage>=3.7.0
+Requires-Dist: google-cloud-storage>=3.8.0
 Requires-Dist: jinja2>=3.1.6
-Requires-Dist: joserfc>=1.6.0
-Requires-Dist: marshmallow>=4.1.2
+Requires-Dist: joserfc>=1.6.1
+Requires-Dist: marshmallow>=4.2.0
 Requires-Dist: marshmallow-sqlalchemy>=1.4.2
-Requires-Dist: numpy>=2.4.0
+Requires-Dist: numpy>=2.4.1
 Requires-Dist: packaging>=25.0
 Requires-Dist: pandas>=2.3.3
 Requires-Dist: pyarrow>=22.0.0
@@ -33,7 +34,7 @@ Requires-Dist: python-dotenv>=1.2.1
 Requires-Dist: requests>=2.32.5
 Requires-Dist: sqlalchemy>=2.0.45
 Requires-Dist: sqlalchemy-mixins~=2.0.5
-Requires-Dist: werkzeug>=3.1.4
+Requires-Dist: werkzeug>=3.1.5
 Requires-Dist: opentelemetry-api>=1.39.1
 Requires-Dist: opentelemetry-exporter-otlp-proto-grpc>=1.39.1
 Requires-Dist: opentelemetry-sdk>=1.39.1

{nci_cidc_api_modules-1.2.45.dist-info → nci_cidc_api_modules-1.2.47.dist-info}/RECORD

@@ -1,10 +1,11 @@
-cidc_api/__init__.py,sha256=TdZZy40X_55kxtHKjwbGqPrDr5qQe_uUz_Fvup_EuNI,23
+boot.py,sha256=oS_16OgU34iDxyFNpJl5rb5KbfbsCXroUCNLwVPxPNg,416
+cidc_api/__init__.py,sha256=o2NRe9gScRz1I1oB_R5MjkQ4w7BrDovQP2Z_Mq2c6bo,23
 cidc_api/telemetry.py,sha256=LuZWkG8CKCn23O41RTNxEOQwMmfpp-fQ6zSInZhVJg8,3333
 cidc_api/config/__init__.py,sha256=5mX8GAPxUKV84iS-aGOoE-4m68LsOCGCDptXNdlgvj0,148
 cidc_api/config/db.py,sha256=mEz8ugjvRNGylCqDYHaaMqaZfDh7sbd76BowmfBvq5c,2428
 cidc_api/config/logging.py,sha256=abhVYtn8lfhIt0tyV2WHFgSmp_s2eeJh7kodB6LH4J0,1149
 cidc_api/config/secrets.py,sha256=jRFj7W43pWuPf9DZQLCKF7WPXf5cUv-BAaS3ASqhV_Q,1481
-cidc_api/config/settings.py,sha256=Zql6Gxb5MNBW-rxcDNIPUqPiYHnD9nxd2-ievHaEYcI,4744
+cidc_api/config/settings.py,sha256=loern8cejUrOJJAog4z0iW9EQaa0nlN0rFrFOdZ-cLE,4483
 cidc_api/models/__init__.py,sha256=bl445G8Zic9YbhZ8ZBni07wtBMhLJRMBA-JqjLxx2bw,66
 cidc_api/models/data.py,sha256=TyVXk5jJO1NN05CLqejLf5BPp6yLSNNxPmFOgXUnA1M,1313
 cidc_api/models/migrations.py,sha256=UlS5How3J4ryaRuZT6F5VQtAKikkl0LTv9MgMO_ltiQ,11161
@@ -158,8 +159,8 @@ cidc_api/shared/gcloud_client.py,sha256=0B13MRF_CUMbzaKtKVDd9fxErNdNGBpxfkknQ5de
 cidc_api/shared/jose.py,sha256=-qzGzEDAlokEp9E7WtBtQkXyyfPWTYXlwYpCqVJWmqM,1830
 cidc_api/shared/rest_utils.py,sha256=RwR30WOUAYCxL7V-i2totEyeriG30GbBDvBcpLXhM9w,6594
 cidc_api/shared/utils.py,sha256=-gLnzxCR9E6h0plt2xrNisUG5_Y6GhhVwz3DgDIzpvs,367
-nci_cidc_api_modules-1.2.45.dist-info/licenses/LICENSE,sha256=pNYWVTHaYonnmJyplmeAp7tQAjosmDpAWjb34jjv7Xs,1102
-nci_cidc_api_modules-1.2.45.dist-info/METADATA,sha256=ierSCHEAC0omx7bg4gjb-XPMPRTK_Qs6VMJXdW65C6A,40270
-nci_cidc_api_modules-1.2.45.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-nci_cidc_api_modules-1.2.45.dist-info/top_level.txt,sha256=rNiRzL0lJGi5Q9tY9uSoMdTbJ-7u5c_D2E86KA94yRA,9
-nci_cidc_api_modules-1.2.45.dist-info/RECORD,,
+nci_cidc_api_modules-1.2.47.dist-info/licenses/LICENSE,sha256=pNYWVTHaYonnmJyplmeAp7tQAjosmDpAWjb34jjv7Xs,1102
+nci_cidc_api_modules-1.2.47.dist-info/METADATA,sha256=2GR9tzPJORuLkzLcHZpy7HkgivsLyAofjWWQbaKDkBk,40301
+nci_cidc_api_modules-1.2.47.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+nci_cidc_api_modules-1.2.47.dist-info/top_level.txt,sha256=BSJqF6ura8-bWCKZvarvQEKvidMM05lH0bLQsNOrI0o,14
+nci_cidc_api_modules-1.2.47.dist-info/RECORD,,

{nci_cidc_api_modules-1.2.45.dist-info → nci_cidc_api_modules-1.2.47.dist-info}/top_level.txt

@@ -1 +1,2 @@
+boot
 cidc_api