nci-cidc-api-modules 1.2.40__py3-none-any.whl → 1.2.42__py3-none-any.whl

cidc_api/__init__.py

@@ -1 +1 @@
-__version__ = "1.2.40"
+__version__ = "1.2.42"

cidc_api/models/data.py

@@ -1,7 +1,11 @@
-from cidc_api.models.pydantic.stage2 import all_models
-from cidc_api.models.db.stage2 import all_models as all_db_models
+from cidc_api.models.pydantic.stage1 import all_models as stage1_all_models
+from cidc_api.models.pydantic.stage2 import all_models as stage2_all_models
+from cidc_api.models.db.stage1 import all_models as stage1_all_db_models
+from cidc_api.models.db.stage2 import all_models as stage2_all_db_models
 
-standard_data_categories = [model.__data_category__ for model in all_models if hasattr(model, "__data_category__")]
+standard_data_categories = [
+    model.__data_category__ for model in stage1_all_models if hasattr(model, "__data_category__")
+]
 
 
 # A class to hold the representation of a trial's dataset all at once
@@ -13,7 +17,12 @@ class Dataset(dict):
 
 
 # Maps data categories like "treatment" to their associated pydantic model
-data_category_to_model = {model.__data_category__: model for model in all_models if hasattr(model, "__data_category__")}
+data_category_to_model = {
+    "stage1": {model.__data_category__: model for model in stage1_all_models if hasattr(model, "__data_category__")},
+    "stage2": {model.__data_category__: model for model in stage2_all_models if hasattr(model, "__data_category__")},
+}
+
 data_category_to_db_model = {
-    model.__data_category__: model for model in all_db_models if hasattr(model, "__data_category__")
+    "stage1": {model.__data_category__: model for model in stage1_all_db_models if hasattr(model, "__data_category__")},
+    "stage2": {model.__data_category__: model for model in stage2_all_db_models if hasattr(model, "__data_category__")},
 }

cidc_api/models/db/stage1/additional_treatment_orm.py

@@ -9,7 +9,7 @@ from cidc_api.models.db.stage1.base_orm import BaseORM
 
 class AdditionalTreatmentORM(BaseORM):
     __tablename__ = "additional_treatment"
-    __repr_attrs__ = ["additional_treatment_id", "participant_id", "description"]
+    __repr_attrs__ = ["additional_treatment_id", "participant_id"]
     __table_args__ = {"schema": "stage1"}
     __data_category__ = "additional_treatment"
 

cidc_api/models/db/stage1/prior_treatment_orm.py

@@ -7,7 +7,7 @@ from sqlalchemy.orm import Mapped, mapped_column, relationship
 from sqlalchemy.types import JSON
 
 from cidc_api.models.db.stage1.base_orm import BaseORM
-from cidc_api.models.types import PriorTreatmentType, ConditioningRegimenType, StemCellDonorType
+from cidc_api.models.types import ConditioningRegimenType, StemCellDonorType
 
 
 class PriorTreatmentORM(BaseORM):
@@ -21,11 +21,10 @@ class PriorTreatmentORM(BaseORM):
 
     prior_treatment_days_to_start: Mapped[NonPositiveInt | None]
     prior_treatment_days_to_end: Mapped[NonPositiveInt | None]
-    prior_treatment_type: Mapped[List[PriorTreatmentType]] = mapped_column(JSON, nullable=False)
-    prior_treatment_description: Mapped[str | None]
+    prior_treatment_description: Mapped[str]
     prior_treatment_best_response: Mapped[str | None]
     prior_treatment_conditioning_regimen_type: Mapped[ConditioningRegimenType | None]
     prior_treatment_stem_cell_donor_type: Mapped[StemCellDonorType | None]
-    prior_treatment_days_to_prior_transplant: Mapped[NegativeInt | None]
+    prior_treatment_days_from_transplant_to_treatment_initiation: Mapped[NegativeInt | None]
 
     participant: Mapped[ParticipantORM] = relationship(back_populates="prior_treatments", cascade="all, delete")

cidc_api/models/db/stage1/specimen_orm.py

@@ -34,6 +34,7 @@ class SpecimenORM(BaseORM):
     __tablename__ = "specimen"
     __repr_attrs__ = ["specimen_id", "participant_id", "cimac_id"]
     __table_args__ = {"schema": "stage1"}
+    __data_category__ = "specimen"
 
     specimen_id: Mapped[int] = mapped_column(primary_key=True)
     participant_id: Mapped[int] = mapped_column(ForeignKey("stage1.participant.participant_id", ondelete="CASCADE"))

cidc_api/models/db/stage1/stem_cell_transplant_orm.py

@@ -18,7 +18,7 @@ class StemCellTransplantORM(BaseORM):
     treatment_id: Mapped[int] = mapped_column(ForeignKey("stage1.treatment.treatment_id", ondelete="CASCADE"))
 
     stem_cell_donor_type: Mapped[StemCellDonorType]
-    allogeneic_donor_type: Mapped[AllogeneicDonorType]
+    allogeneic_donor_type: Mapped[AllogeneicDonorType | None]
     stem_cell_source: Mapped[StemCellSource]
     days_to_transplant: Mapped[NonNegativeInt]
     conditioning_regimen_type: Mapped[ConditioningRegimenType | None]

cidc_api/models/db/stage2/additional_treatment_orm.py

@@ -9,7 +9,7 @@ from cidc_api.models.db.stage2.base_orm import BaseORM
 
 class AdditionalTreatmentORM(BaseORM):
     __tablename__ = "additional_treatment"
-    __repr_attrs__ = ["additional_treatment_id", "participant_id", "description"]
+    __repr_attrs__ = ["additional_treatment_id", "participant_id"]
     __table_args__ = {"schema": "stage2"}
     __data_category__ = "additional_treatment"
 

cidc_api/models/db/stage2/prior_treatment_orm.py

@@ -7,7 +7,7 @@ from sqlalchemy.orm import Mapped, mapped_column, relationship
 from sqlalchemy.types import JSON
 
 from cidc_api.models.db.stage2.base_orm import BaseORM
-from cidc_api.models.types import PriorTreatmentType, ConditioningRegimenType, StemCellDonorType
+from cidc_api.models.types import ConditioningRegimenType, StemCellDonorType
 
 
 class PriorTreatmentORM(BaseORM):
@@ -21,8 +21,7 @@ class PriorTreatmentORM(BaseORM):
 
     prior_treatment_days_to_start: Mapped[NonPositiveInt | None]
     prior_treatment_days_to_end: Mapped[NonPositiveInt | None]
-    prior_treatment_type: Mapped[List[PriorTreatmentType]] = mapped_column(JSON, nullable=False)
-    prior_treatment_description: Mapped[str | None]
+    prior_treatment_description: Mapped[str]
     prior_treatment_best_response: Mapped[str | None]
     prior_treatment_conditioning_regimen_type: Mapped[ConditioningRegimenType | None]
     prior_treatment_stem_cell_donor_type: Mapped[StemCellDonorType | None]

cidc_api/models/db/stage2/publication_orm.py

@@ -3,7 +3,7 @@ from sqlalchemy import ForeignKeyConstraint, ForeignKey
 from sqlalchemy.orm import Mapped, mapped_column, relationship
 
 from cidc_api.models.db.stage2.base_orm import BaseORM
-from cidc_api.models.types import PriorTreatmentType, ConditioningRegimenType, StemCellDonorType
+from cidc_api.models.types import ConditioningRegimenType, StemCellDonorType
 
 
 class PublicationORM(BaseORM):

cidc_api/models/db/stage2/stem_cell_transplant_orm.py

@@ -18,7 +18,7 @@ class StemCellTransplantORM(BaseORM):
     treatment_id: Mapped[int] = mapped_column(ForeignKey("stage2.treatment.treatment_id", ondelete="CASCADE"))
 
     stem_cell_donor_type: Mapped[StemCellDonorType]
-    allogeneic_donor_type: Mapped[AllogeneicDonorType]
+    allogeneic_donor_type: Mapped[AllogeneicDonorType | None]
     stem_cell_source: Mapped[StemCellSource]
     days_to_transplant: Mapped[NonNegativeInt]
     conditioning_regimen_type: Mapped[ConditioningRegimenType | None]

cidc_api/models/pydantic/base.py

@@ -9,7 +9,7 @@ class Base(BaseModel):
     model_config = ConfigDict(
         validate_assignment=True,
         from_attributes=True,
-        extra="forbid",
+        extra="allow",
     )
 
     # Validates the new state and updates the object if valid

cidc_api/models/pydantic/stage1/participant.py

@@ -16,7 +16,7 @@ class Participant(Base):
     participant_id: str | None = None
 
     # The participant identifier assigned by the clinical trial team overseeing the study
-    native_participant_id: str
+    native_participant_id: str | None = None
 
     # The globally unique participant identifier assigned by the CIMAC network. e.g. C8P29A7
     cimac_participant_id: str | None = None

cidc_api/models/pydantic/stage1/prior_treatment.py

@@ -3,7 +3,7 @@ from typing import Self, Annotated, List
 from pydantic import NonPositiveInt, NegativeInt, model_validator, BeforeValidator
 
 from cidc_api.models.pydantic.base import Base
-from cidc_api.models.types import PriorTreatmentType, ConditioningRegimenType, StemCellDonorType
+from cidc_api.models.types import ConditioningRegimenType, StemCellDonorType
 
 
 class PriorTreatment(Base):
@@ -25,11 +25,10 @@ class PriorTreatment(Base):
     prior_treatment_days_to_end: NonPositiveInt | None = None
 
     # Specifies the category or kind of prior treatment modality a participant received.
-    prior_treatment_type: Annotated[List[PriorTreatmentType], BeforeValidator(Base.split_list)]
 
     # Description of the prior treatment such as its full generic name if it is a type of therapy agent,
     # radiotherapy procedure name and location, or surgical procedure name and location.
-    prior_treatment_description: str | None = None
+    prior_treatment_description: str
 
     # Best response from any response assessment system to the prior treatment if available or applicable.
     prior_treatment_best_response: str | None = None
@@ -44,9 +43,3 @@ class PriorTreatment(Base):
     # If prior treatment is "Stem cell transplant", indicates the number of days from enrollment
     # to the prior transplant. This must be a negative number.
     prior_treatment_days_from_transplant_to_treatment_initiation: NegativeInt | None = None
-
-    @model_validator(mode="after")
-    def validate_description_cr(self) -> Self:
-        if "Other therapy" in self.prior_treatment_type and not self.prior_treatment_description:
-            raise ValueError('If type is "Other therapy", please provide description.')
-        return self

cidc_api/models/pydantic/stage1/specimen.py

@@ -1,32 +1,11 @@
 from datetime import datetime
 
 from cidc_api.models.pydantic.base import Base
-from cidc_api.models.types import (
-    UberonAnatomicalTerm,
-    ICDO3MorphologicalCode,
-    SpecimenType,
-    SpecimenDescription,
-    TumorType,
-    CollectionProcedure,
-    FixationStabilizationType,
-    PrimaryContainerType,
-    VolumeUnits,
-    ProcessedType,
-    ConcentrationUnits,
-    DerivativeType,
-    PBMCRestingPeriodUsed,
-    MaterialUnits,
-    MaterialStorageCondition,
-    QCCondition,
-    ReplacementRequested,
-    ResidualUse,
-    DiagnosisVerification,
-    AssayType,
-)
+from cidc_api.models.types import UberonAnatomicalTerm
 
 
 class Specimen(Base):
-    # __data_category__ = "specimen"
+    __data_category__ = "specimen"
     __cardinality__ = "many"
 
     # The unique internal identifier for the specimen record

cidc_api/models/pydantic/stage1/trial.py

@@ -12,10 +12,10 @@ class Trial(Base):
 
     # The unique identifier for the clinical trial. e.g. "GU16-287","BACCI"
     # CDE: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=5054234%20and%20ver_nr=1
-    trial_id: str
+    trial_id: str | None = None
 
     # The version number of the trial dataset. e.g. "1.0"
-    version: str
+    version: str | None = None
 
     # A broad textual description of the primary endpoint(s) of the trial.
     primary_endpoint: str | None = None

cidc_api/models/pydantic/stage2/prior_treatment.py

@@ -3,7 +3,7 @@ from typing import Self, Annotated, List
 from pydantic import NonPositiveInt, NegativeInt, model_validator, BeforeValidator
 
 from cidc_api.models.pydantic.base import Base
-from cidc_api.models.types import PriorTreatmentType, ConditioningRegimenType, StemCellDonorType
+from cidc_api.models.types import ConditioningRegimenType, StemCellDonorType
 
 
 class PriorTreatment(Base):
@@ -24,12 +24,9 @@ class PriorTreatment(Base):
     # the treatment modality.
     prior_treatment_days_to_end: NonPositiveInt | None = None
 
-    # Specifies the category or kind of prior treatment modality a participant received.
-    prior_treatment_type: Annotated[List[PriorTreatmentType], BeforeValidator(Base.split_list)]
-
     # Description of the prior treatment such as its full generic name if it is a type of therapy agent,
     # radiotherapy procedure name and location, or surgical procedure name and location.
-    prior_treatment_description: str | None = None
+    prior_treatment_description: str
 
     # Best response from any response assessment system to the prior treatment if available or applicable.
     prior_treatment_best_response: str | None = None
@@ -44,9 +41,3 @@ class PriorTreatment(Base):
     # If prior treatment is "Stem cell transplant", indicates the number of days from enrollment
     # to the prior transplant. This must be a negative number.
     prior_treatment_days_from_transplant_to_treatment_initiation: NegativeInt | None = None
-
-    @model_validator(mode="after")
-    def validate_description_cr(self) -> Self:
-        if "Other therapy" in self.prior_treatment_type and not self.prior_treatment_description:
-            raise ValueError('If type is "Other therapy", please provide description.')
-        return self

cidc_api/models/types.py

@@ -1044,21 +1044,6 @@ GVHDDiagnosisChronicGlobalSeverity = Literal["Mild", "Moderate", "Severe"]
 GVHDOrganChronicScore = Literal["0", "1", "2", "3"]
 
 
-PriorTreatmentType = Literal[
-    "Surgery",
-    "Radiotherapy",
-    "Immunotherapy",
-    "Chemotherapy",
-    "Targeted therapy",
-    "Other therapy",
-    "Radiopharmaceutical",
-    "Stem cell transplant",
-    "Immunosuppressive therapy/GVHD prophylaxis for transplant",
-    "Conditioning therapy",
-    "Post-transplant salvage therapy",
-]
-
-
 ConditioningRegimenType = Literal["Myeloablative", "Reduced-intensity", "Non-myeloablative", "Other"]
 
 StemCellDonorType = Literal["Autologous", "Allogeneic"]

{nci_cidc_api_modules-1.2.40.dist-info → nci_cidc_api_modules-1.2.42.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: nci_cidc_api_modules
-Version: 1.2.40
+Version: 1.2.42
 Summary: SQLAlchemy data models and configuration tools used in the NCI CIDC API
 Home-page: https://github.com/NCI-CIDC/cidc-api-gae
 License: MIT license

{nci_cidc_api_modules-1.2.40.dist-info → nci_cidc_api_modules-1.2.42.dist-info}/RECORD

@@ -1,4 +1,4 @@
-cidc_api/__init__.py,sha256=iSJlF17_nAoTrcNmK9Ggvp4uHaLT4lGvRjnsq0x_83c,23
+cidc_api/__init__.py,sha256=Ng7mLXI95GEYWOWi3HpHuVabVYSs3igDIcqorkuDZds,23
 cidc_api/telemetry.py,sha256=LuZWkG8CKCn23O41RTNxEOQwMmfpp-fQ6zSInZhVJg8,3333
 cidc_api/config/__init__.py,sha256=5mX8GAPxUKV84iS-aGOoE-4m68LsOCGCDptXNdlgvj0,148
 cidc_api/config/db.py,sha256=mEz8ugjvRNGylCqDYHaaMqaZfDh7sbd76BowmfBvq5c,2428
@@ -6,13 +6,13 @@ cidc_api/config/logging.py,sha256=abhVYtn8lfhIt0tyV2WHFgSmp_s2eeJh7kodB6LH4J0,11
 cidc_api/config/secrets.py,sha256=jRFj7W43pWuPf9DZQLCKF7WPXf5cUv-BAaS3ASqhV_Q,1481
 cidc_api/config/settings.py,sha256=ttOGvk_6zVMn4dtxIZ2-0w3wF2fpAUVfGpVZbKJ2b6s,4653
 cidc_api/models/__init__.py,sha256=bl445G8Zic9YbhZ8ZBni07wtBMhLJRMBA-JqjLxx2bw,66
-cidc_api/models/data.py,sha256=uLkgAJ6tCtsi3bOGt8I9esYrZqgbsTYM1rGfL2gx5sY,837
+cidc_api/models/data.py,sha256=mySTpsG4qEBSh5c7dpQZJ2xTxHiYdFYuXO_a_B2gPXE,1313
 cidc_api/models/migrations.py,sha256=UlS5How3J4ryaRuZT6F5VQtAKikkl0LTv9MgMO_ltiQ,11161
 cidc_api/models/models.py,sha256=h8AvXuxXYuekCwPhiEpYbVGG7jHQog3wnWiEXLIaXdY,153111
 cidc_api/models/schemas.py,sha256=6IE2dJoEMcMbi0Vr1V3cYKnPKU0hv9vRKBixOZHe88s,2766
-cidc_api/models/types.py,sha256=iqnll8ilR0dP4CJ2RpUZPL0vgOtjTsfwOG7B5GoPlsg,30382
+cidc_api/models/types.py,sha256=Zv9eUs7XUysJa_lzimbl7jSOEhvNozAkgPGGbvMIafo,30040
 cidc_api/models/db/stage1/__init__.py,sha256=zsxOSoogzL_xZ8B5OwcwLXvAmm6g2GYx1Zf6LLw8dq8,1917
-cidc_api/models/db/stage1/additional_treatment_orm.py,sha256=J-8iWYM7Bh5UtUVwZjQXz0GUkoB_T6cEbKR64mnjon4,983
+cidc_api/models/db/stage1/additional_treatment_orm.py,sha256=aiimE27oj96sE4F9LwZAlkHNLMwH8dNS5GTYA4DnSIU,968
 cidc_api/models/db/stage1/adverse_event_orm.py,sha256=dgFdFQliPMzoYa5yf8TlX0XM1tcyu4zfu9Xq8Hbmzwc,1956
 cidc_api/models/db/stage1/base_orm.py,sha256=izKizTf2W1fCK2CRUeyuErJbOaxNp6d299n4gqKWHDQ,246
 cidc_api/models/db/stage1/baseline_clinical_assessment_orm.py,sha256=TKI-GquW_jXUxh_cIZntd5G2Soq3n_xwRrsmtd1Jw-c,953
@@ -28,18 +28,18 @@ cidc_api/models/db/stage1/gvhd_organ_chronic_orm.py,sha256=94eT0sbZT8KF7XVaynKZK
 cidc_api/models/db/stage1/medical_history_orm.py,sha256=RYPEnInuMQIUtod6NWWvlHuJe7cgyTNT3R3Ols4yiAE,1324
 cidc_api/models/db/stage1/other_malignancy_orm.py,sha256=2zQ4r5uXO20vWLbHJtDObpct3tYcL6DD0qT3Bixai58,1345
 cidc_api/models/db/stage1/participant_orm.py,sha256=8-tO3avpih2ntUzyZwewBEYD-wJ3EQkcMwx73ME9dnc,3553
-cidc_api/models/db/stage1/prior_treatment_orm.py,sha256=NqUEO1qLS1gknPHw90QnZ1MT0T7AR8okqC-U-uWHOYY,1471
+cidc_api/models/db/stage1/prior_treatment_orm.py,sha256=fcX4KiKVtcn3UzAtwhyvUF-nUD_A58CE1tBlCYDh3RU,1367
 cidc_api/models/db/stage1/radiotherapy_dose_orm.py,sha256=UVEhn5S6JG41oUBpPHfHNpQ8Chk7LfbqTDaYpnkPa-I,1542
 cidc_api/models/db/stage1/response_by_system_orm.py,sha256=Uq99hXlA5Y_KKW19BlGeLpdGXIOOVoPlUV-bbJtsXak,1566
 cidc_api/models/db/stage1/response_orm.py,sha256=2JsI3YwpmVlMrPOwt5ukeWU3fag4fE5CYomJEYIqzNA,1205
-cidc_api/models/db/stage1/specimen_orm.py,sha256=gVfYpCAX2R1NF25Q5dkoNfzwUDkgU-rrp0_2aDeKAMY,1361
-cidc_api/models/db/stage1/stem_cell_transplant_orm.py,sha256=tcjZzV7LkGkBj_DMPkFG8qJWmlTQSH1iamM9MTlnFto,1132
+cidc_api/models/db/stage1/specimen_orm.py,sha256=LPKfl0Loa9TdkEJFhV4u6w8KoaiH1bjEXrYJv9yp2BI,1396
+cidc_api/models/db/stage1/stem_cell_transplant_orm.py,sha256=ngKiV5cPbi1hMVp_MTf92XpcvXKk0gyCxsP3BG5wSGY,1139
 cidc_api/models/db/stage1/surgery_orm.py,sha256=ba23DOF9KRpsabq-SaI0Q3WCAeCWJ8czUoy6Xr2PSpg,1060
 cidc_api/models/db/stage1/therapy_agent_dose_orm.py,sha256=rDierfZ3d1JCEL0yMfyImuIgbbfWS3BI_saVVuYqwNs,1348
 cidc_api/models/db/stage1/treatment_orm.py,sha256=77E01T5UI7aR-T_BKY2pDIFqusuz11oeR8SWi0CWO5c,1667
 cidc_api/models/db/stage1/trial_orm.py,sha256=LiYdJUAx7nS_9Whc_KBm4gTBxKokGeWdVPihXlgYUX4,1308
 cidc_api/models/db/stage2/__init__.py,sha256=R33BM1VDKJya5uuyYnPoGFVfhSViclIOklSoHH-EtBQ,2691
-cidc_api/models/db/stage2/additional_treatment_orm.py,sha256=vtx9OGdVHG8V2jYPheNUWc2AbioW7QZJ4tmrKshd7FU,981
+cidc_api/models/db/stage2/additional_treatment_orm.py,sha256=RpP1ug07ZSI1eB5Z5D9XLtO-APuRSKcvHDPv_eUJqpE,966
 cidc_api/models/db/stage2/administrative_person_orm.py,sha256=jYxwe-BfbjkKhC_iWjWPhnY8dvC1qPVYhCIzki-_r_E,1058
 cidc_api/models/db/stage2/administrative_role_assignment_orm.py,sha256=W5cViaBQa3TyGP5F12B1o9DrDeQHCuXx_NtQx3ICweE,1321
 cidc_api/models/db/stage2/adverse_event_orm.py,sha256=1AH4Uiksyqer8mNNRkYj6lmWfgT_X4-2bGEsGPPR-DI,1956
@@ -63,15 +63,15 @@ cidc_api/models/db/stage2/medical_history_orm.py,sha256=wUVno1vQqMM64YwFng8a-qJg
 cidc_api/models/db/stage2/other_clinical_endpoint_orm.py,sha256=imK4n7_tHYCNIBVVoQKQNhVVL2x7eE69_9VqBW23Y2I,1133
 cidc_api/models/db/stage2/other_malignancy_orm.py,sha256=opTfuRBl54R-HMvbHjewOLpB79DInfG1x8d3IMmQdaA,1345
 cidc_api/models/db/stage2/participant_orm.py,sha256=CKk4aHjxnDr0ERHG_0jt8fGAqXIEVkqa9k3oqYqnMzE,3725
-cidc_api/models/db/stage2/prior_treatment_orm.py,sha256=WVn0jb-R4FoGUOSohy1dBdhXLXHK1nwhzpjplBWij0U,1471
-cidc_api/models/db/stage2/publication_orm.py,sha256=6eYObZIGaT7ye-i30IhGgMX3G0OVT3xo5E4-gzaHDOI,1090
+cidc_api/models/db/stage2/prior_treatment_orm.py,sha256=xHVnfsxpVSd2JPOojTa7ASB0W0BYISAUjgY4BwwVCoU,1347
+cidc_api/models/db/stage2/publication_orm.py,sha256=u8lkD3Ssbju5t20pOSTt7dZ7Pih25c90ACEhWOULkEU,1070
 cidc_api/models/db/stage2/radiotherapy_dose_orm.py,sha256=bYnh3vBLVA6jNuwDObF3XHkWfEKqRXKH2cfV7BEzNlQ,1542
 cidc_api/models/db/stage2/response_by_system_orm.py,sha256=EBS_P85k0uJNR2-CXygtwm2x2e1umDyyvO_CpkxgraU,1566
 cidc_api/models/db/stage2/response_orm.py,sha256=G5XdroBUKdYva752hbaPsloyRwf7zjrIT6vEhGWlKEY,1205
 cidc_api/models/db/stage2/shipment_orm.py,sha256=dyOhtghwaJCiXk5kis6bkBhfiZyOzKQibNtj_HE5SVQ,2037
 cidc_api/models/db/stage2/shipment_specimen_orm.py,sha256=ozG6CTQ1mPXgOx3_yHrIDQ-CQjtDg1Z2TPMMwX1PrRk,951
 cidc_api/models/db/stage2/specimen_orm.py,sha256=caeHreuRpQek13J_RDXtOet2xzqwfTFbwqN-xNeUcPM,4207
-cidc_api/models/db/stage2/stem_cell_transplant_orm.py,sha256=rrRjW_ZZw7tN5gAXju7ZWAinoVmoNCzjvxlWV71lYx8,1132
+cidc_api/models/db/stage2/stem_cell_transplant_orm.py,sha256=txurhLFMCyI_ZZ9zhQk1xvGPffiCiiT3srBsEwlKDlE,1139
 cidc_api/models/db/stage2/surgery_orm.py,sha256=K6FYSQTjXt3OvHUSSoxhAnobAk1oUHpaIgN4dffqr14,1060
 cidc_api/models/db/stage2/therapy_agent_dose_orm.py,sha256=sqxiEhZsuQ-Zn_Wdwf2oJmwjU5A0sq60lgPh7irIj-s,1348
 cidc_api/models/db/stage2/treatment_orm.py,sha256=xGgLSzIgoWpNylnCZAWQ2NElHCGKFmYMnrgqrnSANoQ,1961
@@ -79,7 +79,7 @@ cidc_api/models/db/stage2/trial_orm.py,sha256=OPUwv9lm8zLHvQYJ-XPtNqsppwn8IYXAyu
 cidc_api/models/files/__init__.py,sha256=8BMTnUSHzUbz0lBeEQY6NvApxDD3GMWMduoVMos2g4Y,213
 cidc_api/models/files/details.py,sha256=sZkGM7iEV4-J6IDQCdiMV6KBDLbPxCOqUMaU3aY9rX8,65153
 cidc_api/models/files/facets.py,sha256=rG99wUpHvWHkcRDxTcXz40502Er47l_5hKzP-ORvXGE,33621
-cidc_api/models/pydantic/base.py,sha256=e1EJJZ5is9mGdXgF87htQgRg5gl835QW3eAeLApmAJw,1428
+cidc_api/models/pydantic/base.py,sha256=6Lsf4fekIS1E-DwZmgCXlfm3Qq9_23dA_v3iz1w2JoA,1427
 cidc_api/models/pydantic/stage1/__init__.py,sha256=H-NDjCd8isHTgZ7sqz-MIbzC-PpW1kEtR-x-Dyc8r6Q,1667
 cidc_api/models/pydantic/stage1/additional_treatment.py,sha256=TFVzjd1NPLSfH9UnL2W3aZhpZSzDsg97j9IK8t882YA,1050
 cidc_api/models/pydantic/stage1/adverse_event.py,sha256=zPy02xoRQeyaXBSmqDdQt4BaRTD6OHBjycVHVtBaAow,3880
@@ -95,17 +95,17 @@ cidc_api/models/pydantic/stage1/gvhd_organ_acute.py,sha256=VxlNGRJYjm9tW2lyLll8p
 cidc_api/models/pydantic/stage1/gvhd_organ_chronic.py,sha256=Fnp1Qm-ZDDtDLrgOAnEOUnQVNWI9WrTSomiFPStGmjc,810
 cidc_api/models/pydantic/stage1/medical_history.py,sha256=IXtEvXrrLhTt6JEsj2MpDiZtLAkmrrsUS4aoe7sxans,1697
 cidc_api/models/pydantic/stage1/other_malignancy.py,sha256=V-Jru6uukipocKs7lDbmkGyJsHBxlM3A3NJoTShjJ9I,2188
-cidc_api/models/pydantic/stage1/participant.py,sha256=x7gKHaw46-BbqNCgKWPLnp7U8L2pnAkh7hdByKvG_Kk,2185
-cidc_api/models/pydantic/stage1/prior_treatment.py,sha256=5ISQuwSFqDuOannmlN__27FodcCCjRo3uDlg-bBc1dY,2520
+cidc_api/models/pydantic/stage1/participant.py,sha256=iDQrwYYtJY_XrkdbhsRNZuL44ighvW8JHCGxH-qo8jk,2199
+cidc_api/models/pydantic/stage1/prior_treatment.py,sha256=axhyPHwYCoIvcIonjyPJ95HUyaAXqIuOd6hhoDM3LJU,2101
 cidc_api/models/pydantic/stage1/radiotherapy_dose.py,sha256=c5q0TxPOrYHX9KTd9he5B01zirKgcCxMnvW_7adzCrI,3327
 cidc_api/models/pydantic/stage1/response.py,sha256=rPqfYZhaZRcA1E7dkGOaHe9f2_YIcIg9-KtIPSTh1s8,2886
 cidc_api/models/pydantic/stage1/response_by_system.py,sha256=f8ZnLfNXGJLCfFL1X2jxlSUJPGvJKnOCf6PYbJVMXW8,4909
-cidc_api/models/pydantic/stage1/specimen.py,sha256=5fa3jVWFziK2mBwKOxY1ToL7e0CvsmdeLBCRF-uRcv8,1718
+cidc_api/models/pydantic/stage1/specimen.py,sha256=scDekZ-RtXOQTTLburhqT3RF4KM34iY9NAV1wYi_HSg,1281
 cidc_api/models/pydantic/stage1/stem_cell_transplant.py,sha256=XsDVUksqbIprPxHwLlwHGyji4jsIFNMcIk-S0H4rDnQ,1228
 cidc_api/models/pydantic/stage1/surgery.py,sha256=53NrET_kNOlXXPP-mH5ecIPrNqDpDQt5s9WfsjPDM-s,2149
 cidc_api/models/pydantic/stage1/therapy_agent_dose.py,sha256=Y2L0vAqkfA5eI2qg7iQrqzCORwbkjyVEsthc6f5HKas,3021
 cidc_api/models/pydantic/stage1/treatment.py,sha256=1TeBaDJ352IfB10AtJH2iREdex3SZgDRXNUkhT0FZMo,2033
-cidc_api/models/pydantic/stage1/trial.py,sha256=PY_h-vJV7JYUM8Y03UVvZRFAQqDPYIbYQPrd9t-_dyw,1831
+cidc_api/models/pydantic/stage1/trial.py,sha256=EFsMVMxxHbPeaBb6JG9JpX1qjtoho2t-GZnaI0gsYrY,1859
 cidc_api/models/pydantic/stage2/__init__.py,sha256=OQRG5wFkNsyAU_0KI1W5PDn8pBDe1EJDcgKZ19shh_g,2331
 cidc_api/models/pydantic/stage2/additional_treatment.py,sha256=TFVzjd1NPLSfH9UnL2W3aZhpZSzDsg97j9IK8t882YA,1050
 cidc_api/models/pydantic/stage2/administrative_person.py,sha256=3UYRgGLP7RukwZYTvQEnviDxBvWXj1uqditsoLJOw0s,1552
@@ -130,7 +130,7 @@ cidc_api/models/pydantic/stage2/medical_history.py,sha256=IXtEvXrrLhTt6JEsj2MpDi
 cidc_api/models/pydantic/stage2/other_clinical_endpoint.py,sha256=bxZV3qIrrieX4xy3HbKyHdgfpwBcT-abQNlSodVCMns,1093
 cidc_api/models/pydantic/stage2/other_malignancy.py,sha256=V-Jru6uukipocKs7lDbmkGyJsHBxlM3A3NJoTShjJ9I,2188
 cidc_api/models/pydantic/stage2/participant.py,sha256=x7gKHaw46-BbqNCgKWPLnp7U8L2pnAkh7hdByKvG_Kk,2185
-cidc_api/models/pydantic/stage2/prior_treatment.py,sha256=5ISQuwSFqDuOannmlN__27FodcCCjRo3uDlg-bBc1dY,2520
+cidc_api/models/pydantic/stage2/prior_treatment.py,sha256=G5Cd8PSYRe3gdeApjQWn15QAErB4nDahMKcVRsr88_c,2011
 cidc_api/models/pydantic/stage2/publication.py,sha256=GBuvqBf0lyOoopN1S-3qX310xFxhixk7oDJLuGzLuiw,1817
 cidc_api/models/pydantic/stage2/radiotherapy_dose.py,sha256=c5q0TxPOrYHX9KTd9he5B01zirKgcCxMnvW_7adzCrI,3327
 cidc_api/models/pydantic/stage2/response.py,sha256=rPqfYZhaZRcA1E7dkGOaHe9f2_YIcIg9-KtIPSTh1s8,2886
@@ -158,8 +158,8 @@ cidc_api/shared/gcloud_client.py,sha256=l40qQ0lo2QQkWfarXlApmI7iPeYzYoEEXBvemyiz
 cidc_api/shared/jose.py,sha256=-qzGzEDAlokEp9E7WtBtQkXyyfPWTYXlwYpCqVJWmqM,1830
 cidc_api/shared/rest_utils.py,sha256=RwR30WOUAYCxL7V-i2totEyeriG30GbBDvBcpLXhM9w,6594
 cidc_api/shared/utils.py,sha256=-gLnzxCR9E6h0plt2xrNisUG5_Y6GhhVwz3DgDIzpvs,367
-nci_cidc_api_modules-1.2.40.dist-info/licenses/LICENSE,sha256=pNYWVTHaYonnmJyplmeAp7tQAjosmDpAWjb34jjv7Xs,1102
-nci_cidc_api_modules-1.2.40.dist-info/METADATA,sha256=mrQVRK1d7lYF9RwqmvjEtufl6wMVWnJ6HHXANBqjWjo,40229
-nci_cidc_api_modules-1.2.40.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-nci_cidc_api_modules-1.2.40.dist-info/top_level.txt,sha256=rNiRzL0lJGi5Q9tY9uSoMdTbJ-7u5c_D2E86KA94yRA,9
-nci_cidc_api_modules-1.2.40.dist-info/RECORD,,
+nci_cidc_api_modules-1.2.42.dist-info/licenses/LICENSE,sha256=pNYWVTHaYonnmJyplmeAp7tQAjosmDpAWjb34jjv7Xs,1102
+nci_cidc_api_modules-1.2.42.dist-info/METADATA,sha256=SroeJFGQ9eCHO-1d02bhZXpVul_6QIYn1t7s_Df4ySI,40229
+nci_cidc_api_modules-1.2.42.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+nci_cidc_api_modules-1.2.42.dist-info/top_level.txt,sha256=rNiRzL0lJGi5Q9tY9uSoMdTbJ-7u5c_D2E86KA94yRA,9
+nci_cidc_api_modules-1.2.42.dist-info/RECORD,,