nci-cidc-api-modules 1.2.39__py3-none-any.whl → 1.2.41__py3-none-any.whl

cidc_api/models/pydantic/stage2/disease.py

@@ -1,7 +1,7 @@
 from pydantic import NonPositiveInt, model_validator, BeforeValidator
 from typing import List, Self, Annotated, get_args
 
-from .base import Base
+from cidc_api.models.pydantic.base import Base
 from cidc_api.models.types import (
     TumorGrade,
     CancerStageSystem,

cidc_api/models/pydantic/stage2/exposure.py

@@ -2,7 +2,7 @@ from typing import Self
 
 from pydantic import model_validator
 
-from .base import Base
+from cidc_api.models.pydantic.base import Base
 from cidc_api.models.types import YNU, ExposureType
 
 

cidc_api/models/pydantic/stage2/file.py

@@ -1,5 +1,5 @@
 from datetime import datetime
-from .base import Base
+from cidc_api.models.pydantic.base import Base
 from cidc_api.models.types import ChecksumType, FileFormat
 
 
@@ -8,7 +8,7 @@ class File(Base):
     file_id: int | None = None
 
     # The unique identifier for the associated trial
-    trial_id: int | None = None
+    trial_id: str | None = None
 
     # The version number of the trial dataset
     version: str | None = None

cidc_api/models/pydantic/stage2/gvhd_diagnosis_acute.py

@@ -1,4 +1,4 @@
-from .base import Base
+from cidc_api.models.pydantic.base import Base
 from cidc_api.models.types import (
     GVHDDiagnosisAcuteAssessmentSystem,
     GVHDDiagnosisAcuteAssessmentSystemVersion,

cidc_api/models/pydantic/stage2/gvhd_diagnosis_chronic.py

@@ -1,4 +1,4 @@
-from .base import Base
+from cidc_api.models.pydantic.base import Base
 from cidc_api.models.types import (
     GVHDDiagnosisChronicAssessmentSystem,
     GVHDDiagnosisChronicAssessmentSystemVersion,

cidc_api/models/pydantic/stage2/gvhd_organ_acute.py

@@ -1,4 +1,4 @@
-from .base import Base
+from cidc_api.models.pydantic.base import Base
 from cidc_api.models.types import (
     GVHDOrgan,
     GVHDOrganAcuteStage,

cidc_api/models/pydantic/stage2/gvhd_organ_chronic.py

@@ -1,4 +1,4 @@
-from .base import Base
+from cidc_api.models.pydantic.base import Base
 from cidc_api.models.types import (
     GVHDOrgan,
     GVHDOrganChronicScore,

cidc_api/models/pydantic/stage2/institution.py

@@ -1,4 +1,4 @@
-from .base import Base
+from cidc_api.models.pydantic.base import Base
 
 
 class Institution(Base):

cidc_api/models/pydantic/stage2/medical_history.py

@@ -2,7 +2,7 @@ from typing import Self
 
 from pydantic import NonNegativeInt, PositiveFloat, model_validator
 
-from .base import Base
+from cidc_api.models.pydantic.base import Base
 from cidc_api.models.types import TobaccoSmokingStatus
 
 

cidc_api/models/pydantic/stage2/other_clinical_endpoint.py

@@ -1,4 +1,4 @@
-from .base import Base
+from cidc_api.models.pydantic.base import Base
 from cidc_api.models.types import YNU, ResponseSystem, ResponseSystemVersion
 
 

cidc_api/models/pydantic/stage2/other_malignancy.py

@@ -2,7 +2,7 @@ from typing import Self
 
 from pydantic import NonPositiveInt, model_validator
 
-from .base import Base
+from cidc_api.models.pydantic.base import Base
 from cidc_api.models.types import UberonAnatomicalTerm, ICDO3MorphologicalCode, ICDO3MorphologicalTerm, MalignancyStatus
 
 

cidc_api/models/pydantic/stage2/participant.py

@@ -2,7 +2,7 @@ from typing import Self
 
 from pydantic import model_validator
 
-from .base import Base
+from cidc_api.models.pydantic.base import Base
 from cidc_api.models.types import YNU
 from cidc_api.models.types import OffStudyReason
 
@@ -16,13 +16,16 @@ class Participant(Base):
     participant_id: str | None = None
 
     # The participant identifier assigned by the clinical trial team overseeing the study
-    native_participant_id: str | None = None
+    native_participant_id: str
 
     # The globally unique participant identifier assigned by the CIMAC network. e.g. C8P29A7
     cimac_participant_id: str | None = None
 
     # The unique identifier for the associated trial that the participant is participating in
-    trial_id: int | None = None
+    trial_id: str | None = None
+
+    # The version number of the trial dataset. e.g. "1.0"
+    version: str | None = None
 
     # Indicates if the individual is no longer actively participating in the clinical trial.
     # CDE: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=14834973%20and%20ver_nr=1

cidc_api/models/pydantic/stage2/prior_treatment.py

@@ -2,8 +2,8 @@ from typing import Self, Annotated, List
 
 from pydantic import NonPositiveInt, NegativeInt, model_validator, BeforeValidator
 
-from .base import Base
-from cidc_api.models.types import PriorTreatmentType, ConditioningRegimenType, StemCellDonorType
+from cidc_api.models.pydantic.base import Base
+from cidc_api.models.types import ConditioningRegimenType, StemCellDonorType
 
 
 class PriorTreatment(Base):
@@ -24,12 +24,9 @@ class PriorTreatment(Base):
     # the treatment modality.
     prior_treatment_days_to_end: NonPositiveInt | None = None
 
-    # Specifies the category or kind of prior treatment modality a participant received.
-    prior_treatment_type: Annotated[List[PriorTreatmentType], BeforeValidator(Base.split_list)]
-
     # Description of the prior treatment such as its full generic name if it is a type of therapy agent,
     # radiotherapy procedure name and location, or surgical procedure name and location.
-    prior_treatment_description: str | None = None
+    prior_treatment_description: str
 
     # Best response from any response assessment system to the prior treatment if available or applicable.
     prior_treatment_best_response: str | None = None
@@ -41,12 +38,6 @@ class PriorTreatment(Base):
     # If prior treatment is "Stem cell transplant", indicates what stem cell donor type used.
     prior_treatment_stem_cell_donor_type: StemCellDonorType | None = None
 
-    # If prior treatment is "Stem cell transplant", indicates the number of days from the transplant
-    # date to the start of the current treatment.
-    prior_treatment_days_to_prior_transplant: NegativeInt | None = None
-
-    @model_validator(mode="after")
-    def validate_description_cr(self) -> Self:
-        if "Other therapy" in self.prior_treatment_type and not self.prior_treatment_description:
-            raise ValueError('If type is "Other therapy", please provide description.')
-        return self
+    # If prior treatment is "Stem cell transplant", indicates the number of days from enrollment
+    # to the prior transplant. This must be a negative number.
+    prior_treatment_days_from_transplant_to_treatment_initiation: NegativeInt | None = None

cidc_api/models/pydantic/stage2/publication.py

@@ -1,4 +1,4 @@
-from .base import Base
+from cidc_api.models.pydantic.base import Base
 
 
 class Publication(Base):
@@ -6,7 +6,7 @@ class Publication(Base):
     publication_id: int | None = None
 
     # The unique internal identifier for the associated Trial record
-    trial_id: int | None = None
+    trial_id: str | None = None
 
     # The version number of the trial dataset
     version: str | None = None

cidc_api/models/pydantic/stage2/radiotherapy_dose.py

@@ -2,7 +2,7 @@ from typing import Self
 
 from pydantic import NonNegativeInt, NonNegativeFloat, model_validator
 
-from .base import Base
+from cidc_api.models.pydantic.base import Base
 from cidc_api.models.types import (
     YNU,
     RadiotherapyProcedure,

cidc_api/models/pydantic/stage2/response.py

@@ -2,7 +2,7 @@ from typing import Self
 
 from pydantic import NonNegativeInt, model_validator
 
-from .base import Base
+from cidc_api.models.pydantic.base import Base
 from cidc_api.models.types import SurvivalStatus, YNUNA, CauseOfDeath
 
 
@@ -44,7 +44,7 @@ class Response(Base):
     evaluable_for_efficacy: bool
 
     # Days from enrollment date to the last time the patient's vital status was verified.
-    days_to_last_vital_status: NonNegativeInt | None = None
+    days_to_last_vital_status: NonNegativeInt | None = None  # TODO: Needs CR check
 
     @model_validator(mode="after")
     def validate_cause_of_death_cr(self) -> Self:

cidc_api/models/pydantic/stage2/response_by_system.py

@@ -2,7 +2,7 @@ from typing import Self
 
 from pydantic import PositiveInt, model_validator, NonNegativeInt
 
-from .base import Base
+from cidc_api.models.pydantic.base import Base
 from cidc_api.models.types import ResponseSystem, ResponseSystemVersion, BestOverallResponse, YNUNA
 
 

cidc_api/models/pydantic/stage2/shipment.py

@@ -1,6 +1,6 @@
 from datetime import datetime
 
-from .base import Base
+from cidc_api.models.pydantic.base import Base
 from cidc_api.models.types import AssayPriority, AssayType, Courier, ShipmentCondition, ShipmentQuality
 
 
@@ -12,7 +12,7 @@ class Shipment(Base):
     institution_id: int | None = None
 
     # The unique internal identifier for the associated trial.
-    trial_id: int | None = None
+    trial_id: str | None = None
 
     # The version number of the trial dataset
     version: str | None = None

cidc_api/models/pydantic/stage2/shipment_specimen.py

@@ -1,4 +1,4 @@
-from .base import Base
+from cidc_api.models.pydantic.base import Base
 
 
 class ShipmentSpecimen(Base):

cidc_api/models/pydantic/stage2/specimen.py

@@ -1,6 +1,6 @@
 from datetime import datetime
 
-from .base import Base
+from cidc_api.models.pydantic.base import Base
 from cidc_api.models.types import (
     UberonAnatomicalTerm,
     ICDO3MorphologicalCode,
@@ -66,7 +66,7 @@ class Specimen(Base):
     # Categorical description of timepoint at which the sample was taken.
     # CDE: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=5899851%20and%20ver_nr=1
     # Note: CIDC doesn't conform to this CDE's PVs
-    collection_event_name: str | None = None
+    collection_event_name: str
 
     # The type of the specimen
     specimen_type: SpecimenType | None = None
@@ -208,4 +208,7 @@ class Specimen(Base):
     date_ingested: datetime | None = None
 
     # Days from enrollment date to date specimen was collected.
-    days_to_specimen_collection: int | None = None
+    days_to_specimen_collection: int
+
+    # The location within the body from which a specimen was originally obtained as captured in the Uberon anatomical term.
+    organ_site_of_collection: UberonAnatomicalTerm

cidc_api/models/pydantic/stage2/stem_cell_transplant.py

@@ -1,5 +1,5 @@
 from pydantic import NonNegativeInt
-from .base import Base
+from cidc_api.models.pydantic.base import Base
 from cidc_api.models.types import (
     StemCellDonorType,
     AllogeneicDonorType,
@@ -26,7 +26,7 @@ class StemCellTransplant(Base):
     allogeneic_donor_type: AllogeneicDonorType | None = None
 
     # Source of the stem cells used for transplant.
-    stem_cells_source: StemCellSource
+    stem_cell_source: StemCellSource
 
     # Days from the enrollment date to the date of the stem cell transplant.
     days_to_transplant: NonNegativeInt

cidc_api/models/pydantic/stage2/surgery.py

@@ -2,7 +2,7 @@ from typing import Self
 
 from pydantic import NonNegativeInt, model_validator
 
-from .base import Base
+from cidc_api.models.pydantic.base import Base
 from cidc_api.models.types import SurgicalProcedure, UberonAnatomicalTerm, YNU
 
 

cidc_api/models/pydantic/stage2/therapy_agent_dose.py

@@ -2,7 +2,7 @@ from typing import Self
 
 from pydantic import NonNegativeInt, NonNegativeFloat, PositiveFloat, model_validator
 
-from .base import Base
+from cidc_api.models.pydantic.base import Base
 from cidc_api.models.types import YNU, TherapyAgentDoseUnits
 
 

cidc_api/models/pydantic/stage2/treatment.py

@@ -2,7 +2,7 @@ from typing import Self
 
 from pydantic import model_validator
 
-from .base import Base
+from cidc_api.models.pydantic.base import Base
 from cidc_api.models.types import YNU, OffTreatmentReason
 
 

cidc_api/models/pydantic/stage2/trial.py

@@ -2,8 +2,8 @@ from datetime import datetime
 from pydantic import BeforeValidator
 from typing import List, Annotated
 
-from .base import Base
-from cidc_api.models.types import TrialOrganization, TrialFundingAgency, AssayType, AgeGroup
+from cidc_api.models.pydantic.base import Base
+from cidc_api.models.types import TrialOrganization, TrialFundingAgency, AssayType, AgeGroup, PrimaryPurposeType
 
 
 class Trial(Base):
@@ -12,7 +12,7 @@ class Trial(Base):
 
     # The unique identifier for the clinical trial. e.g. "GU16-287","BACCI"
     # CDE: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=5054234%20and%20ver_nr=1
-    trial_id: str | None = None  # TODO: Fix stage2 trial_id to not be nullable, once stage 1 models are complete
+    trial_id: str | None = None
 
     # The version number of the trial dataset. e.g. "1.0"
     version: str | None = None
@@ -69,6 +69,10 @@ class Trial(Base):
     # CDE: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=16333703%20and%20ver_nr=1
     dates_of_conduct_end: datetime | None = None
 
+    # A classification of the study based upon the primary intent of the study's activities.
+    # CDE: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=11160683%20and%20ver_nr=1
+    primary_purpose_type: PrimaryPurposeType
+
     # The image of the trial data schema
     schema_file_id: int | None = None
 
@@ -81,11 +85,5 @@ class Trial(Base):
     # The list of assays that CIDC expects to receive for this trial.
     expected_assays: List[AssayType] = []
 
-    # Is the cancer studying a liquid tumor type?
-    is_liquid_tumor_trial: bool = False
-
     # The dbgap study accession number associated with the trial.
-    dbgap_study_accession: str | None = None
-
-    # The internal version identifier for this specific trial dataset.
-    version: str
+    dbgap_study_accession: str

cidc_api/models/types.py

@@ -26,6 +26,7 @@ AgeGroup = Literal[
     "Pediatric",
 ]
 
+
 TrialOrganization = Literal[
     "ECOG-ACRIN",
     "SWOG",
@@ -59,6 +60,34 @@ TrialFundingAgency = Literal[
 ]
 
 
+PrimaryPurposeType = Literal[
+    "Adverse Effect Mitigation Study",
+    "Ancillary Study",
+    "Basic Science  Research ",
+    "Correlative Study",
+    "Cure Study",
+    "Device Feasibility Study",
+    "Diagnosis Study",
+    "Disease Modifying Treatment Study",
+    "Early Detection Study",
+    "Education Training Clinical Study",
+    "Epidemiology  Research ",
+    "Genomics Research",
+    "Health Services Research",
+    "Imaging Research",
+    "Interventional Study",
+    "Observational Study",
+    "Outcomes Research",
+    "Prevention Study",
+    "Proteomic Research",
+    "Rehabilitation Clinical Study ",
+    "Screening Study",
+    "Supportive Care Study",
+    "Transcriptomics Research",
+    "Treatment Study",
+]
+
+
 AssayType = Literal[
     "Olink",
     "WES",
@@ -285,7 +314,6 @@ CancerStageAJCC = Literal[
 
 
 CancerStageFIGO = Literal[
-    "value",
     "Stage I",
     "Stage IA",
     "Stage IA1",
@@ -1016,21 +1044,6 @@ GVHDDiagnosisChronicGlobalSeverity = Literal["Mild", "Moderate", "Severe"]
 GVHDOrganChronicScore = Literal["0", "1", "2", "3"]
 
 
-PriorTreatmentType = Literal[
-    "Surgery",
-    "Radiotherapy",
-    "Immunotherapy",
-    "Chemotherapy",
-    "Targeted therapy",
-    "Other therapy",
-    "Radiopharmaceutical",
-    "Stem cell transplant",
-    "Immunosuppressive therapy/GVHD prophylaxis for transplant",
-    "Conditioning therapy",
-    "Post-transplant salvage therapy",
-]
-
-
 ConditioningRegimenType = Literal["Myeloablative", "Reduced-intensity", "Non-myeloablative", "Other"]
 
 StemCellDonorType = Literal["Autologous", "Allogeneic"]

cidc_api/shared/gcloud_client.py

@@ -449,9 +449,9 @@ def gcs_xlsx_or_csv_file_to_pandas_dataframe(bucket_name: str, blob_name: str):
 
     # TODO: specify sheet in xlsx file and/or accept tsv and xls files
     if blob_name[-3:] == "csv":
-        return strip_whitespaces(pd.read_csv(temp_file))
+        return strip_whitespaces(pd.read_csv(temp_file, dtype=str, keep_default_na=False))
     elif blob_name[-4:] == "xlsx":
-        return strip_whitespaces(pd.read_excel(temp_file))
+        return strip_whitespaces(pd.read_excel(temp_file, dtype=str, keep_default_na=False))
     else:
         raise Exception("Can only read csv or xlsx files")
 

cidc_api/shared/utils.py

@@ -15,5 +15,6 @@ def strip_whitespaces(df, sheet=None):
 
     df.rename(columns=_stripper, inplace=True)
     df = df.map(_stripper)
+    df.replace("", None, inplace=True)
 
     return df

{nci_cidc_api_modules-1.2.39.dist-info → nci_cidc_api_modules-1.2.41.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: nci_cidc_api_modules
-Version: 1.2.39
+Version: 1.2.41
 Summary: SQLAlchemy data models and configuration tools used in the NCI CIDC API
 Home-page: https://github.com/NCI-CIDC/cidc-api-gae
 License: MIT license

nci_cidc_api_modules-1.2.41.dist-info/RECORD

@@ -0,0 +1,165 @@
+cidc_api/__init__.py,sha256=4Ai8ZOYwlbREMRamBAcMFBQlvDiu4t_ciaxtb7__HP0,23
+cidc_api/telemetry.py,sha256=LuZWkG8CKCn23O41RTNxEOQwMmfpp-fQ6zSInZhVJg8,3333
+cidc_api/config/__init__.py,sha256=5mX8GAPxUKV84iS-aGOoE-4m68LsOCGCDptXNdlgvj0,148
+cidc_api/config/db.py,sha256=mEz8ugjvRNGylCqDYHaaMqaZfDh7sbd76BowmfBvq5c,2428
+cidc_api/config/logging.py,sha256=abhVYtn8lfhIt0tyV2WHFgSmp_s2eeJh7kodB6LH4J0,1149
+cidc_api/config/secrets.py,sha256=jRFj7W43pWuPf9DZQLCKF7WPXf5cUv-BAaS3ASqhV_Q,1481
+cidc_api/config/settings.py,sha256=ttOGvk_6zVMn4dtxIZ2-0w3wF2fpAUVfGpVZbKJ2b6s,4653
+cidc_api/models/__init__.py,sha256=bl445G8Zic9YbhZ8ZBni07wtBMhLJRMBA-JqjLxx2bw,66
+cidc_api/models/data.py,sha256=mySTpsG4qEBSh5c7dpQZJ2xTxHiYdFYuXO_a_B2gPXE,1313
+cidc_api/models/migrations.py,sha256=UlS5How3J4ryaRuZT6F5VQtAKikkl0LTv9MgMO_ltiQ,11161
+cidc_api/models/models.py,sha256=h8AvXuxXYuekCwPhiEpYbVGG7jHQog3wnWiEXLIaXdY,153111
+cidc_api/models/schemas.py,sha256=6IE2dJoEMcMbi0Vr1V3cYKnPKU0hv9vRKBixOZHe88s,2766
+cidc_api/models/types.py,sha256=Zv9eUs7XUysJa_lzimbl7jSOEhvNozAkgPGGbvMIafo,30040
+cidc_api/models/db/stage1/__init__.py,sha256=zsxOSoogzL_xZ8B5OwcwLXvAmm6g2GYx1Zf6LLw8dq8,1917
+cidc_api/models/db/stage1/additional_treatment_orm.py,sha256=aiimE27oj96sE4F9LwZAlkHNLMwH8dNS5GTYA4DnSIU,968
+cidc_api/models/db/stage1/adverse_event_orm.py,sha256=dgFdFQliPMzoYa5yf8TlX0XM1tcyu4zfu9Xq8Hbmzwc,1956
+cidc_api/models/db/stage1/base_orm.py,sha256=izKizTf2W1fCK2CRUeyuErJbOaxNp6d299n4gqKWHDQ,246
+cidc_api/models/db/stage1/baseline_clinical_assessment_orm.py,sha256=TKI-GquW_jXUxh_cIZntd5G2Soq3n_xwRrsmtd1Jw-c,953
+cidc_api/models/db/stage1/comorbidity_orm.py,sha256=v3a29HA_j7ZTJWQSu17HPutSqACf4m5whgJCVNgoGJs,923
+cidc_api/models/db/stage1/consent_group_orm.py,sha256=4dKIFyFdTog1lUvnhPOfOhe61CvPZYRvRiuVpe9bPlg,1141
+cidc_api/models/db/stage1/demographic_orm.py,sha256=t7fcHya_MGNhdq-0wS0s9MiHEG3W4Xan0fd01uvGGHU,1735
+cidc_api/models/db/stage1/disease_orm.py,sha256=ATghsDBfbOFdA5uvaRKp_-td11ze2QBd8IM7AtI6Gkk,2007
+cidc_api/models/db/stage1/exposure_orm.py,sha256=EAFDF9q3EPEiEscqpfZl2PE5oueMarcde3U3d5d5a5M,853
+cidc_api/models/db/stage1/gvhd_diagnosis_acute_orm.py,sha256=_wV4yy8hZk71Lm9t3Zl1u2OFswzEo1W88Pk0qU9q5Y0,1500
+cidc_api/models/db/stage1/gvhd_diagnosis_chronic_orm.py,sha256=MJAznv516eh0l5pXreIC3ykqS0CPI9B1gvSxActbIHc,1582
+cidc_api/models/db/stage1/gvhd_organ_acute_orm.py,sha256=-6XMobavlAllAUqHc1e-WqjF6APcln1xb31ZChIM17w,880
+cidc_api/models/db/stage1/gvhd_organ_chronic_orm.py,sha256=94eT0sbZT8KF7XVaynKZKlYYZuGrF0TxWiF_yDwtgIk,904
+cidc_api/models/db/stage1/medical_history_orm.py,sha256=RYPEnInuMQIUtod6NWWvlHuJe7cgyTNT3R3Ols4yiAE,1324
+cidc_api/models/db/stage1/other_malignancy_orm.py,sha256=2zQ4r5uXO20vWLbHJtDObpct3tYcL6DD0qT3Bixai58,1345
+cidc_api/models/db/stage1/participant_orm.py,sha256=8-tO3avpih2ntUzyZwewBEYD-wJ3EQkcMwx73ME9dnc,3553
+cidc_api/models/db/stage1/prior_treatment_orm.py,sha256=fcX4KiKVtcn3UzAtwhyvUF-nUD_A58CE1tBlCYDh3RU,1367
+cidc_api/models/db/stage1/radiotherapy_dose_orm.py,sha256=UVEhn5S6JG41oUBpPHfHNpQ8Chk7LfbqTDaYpnkPa-I,1542
+cidc_api/models/db/stage1/response_by_system_orm.py,sha256=Uq99hXlA5Y_KKW19BlGeLpdGXIOOVoPlUV-bbJtsXak,1566
+cidc_api/models/db/stage1/response_orm.py,sha256=2JsI3YwpmVlMrPOwt5ukeWU3fag4fE5CYomJEYIqzNA,1205
+cidc_api/models/db/stage1/specimen_orm.py,sha256=LPKfl0Loa9TdkEJFhV4u6w8KoaiH1bjEXrYJv9yp2BI,1396
+cidc_api/models/db/stage1/stem_cell_transplant_orm.py,sha256=tcjZzV7LkGkBj_DMPkFG8qJWmlTQSH1iamM9MTlnFto,1132
+cidc_api/models/db/stage1/surgery_orm.py,sha256=ba23DOF9KRpsabq-SaI0Q3WCAeCWJ8czUoy6Xr2PSpg,1060
+cidc_api/models/db/stage1/therapy_agent_dose_orm.py,sha256=rDierfZ3d1JCEL0yMfyImuIgbbfWS3BI_saVVuYqwNs,1348
+cidc_api/models/db/stage1/treatment_orm.py,sha256=77E01T5UI7aR-T_BKY2pDIFqusuz11oeR8SWi0CWO5c,1667
+cidc_api/models/db/stage1/trial_orm.py,sha256=LiYdJUAx7nS_9Whc_KBm4gTBxKokGeWdVPihXlgYUX4,1308
+cidc_api/models/db/stage2/__init__.py,sha256=R33BM1VDKJya5uuyYnPoGFVfhSViclIOklSoHH-EtBQ,2691
+cidc_api/models/db/stage2/additional_treatment_orm.py,sha256=RpP1ug07ZSI1eB5Z5D9XLtO-APuRSKcvHDPv_eUJqpE,966
+cidc_api/models/db/stage2/administrative_person_orm.py,sha256=jYxwe-BfbjkKhC_iWjWPhnY8dvC1qPVYhCIzki-_r_E,1058
+cidc_api/models/db/stage2/administrative_role_assignment_orm.py,sha256=W5cViaBQa3TyGP5F12B1o9DrDeQHCuXx_NtQx3ICweE,1321
+cidc_api/models/db/stage2/adverse_event_orm.py,sha256=1AH4Uiksyqer8mNNRkYj6lmWfgT_X4-2bGEsGPPR-DI,1956
+cidc_api/models/db/stage2/arm_orm.py,sha256=J7Q7oYWGS4q2w38xqGn0zH3kQo0HsE_FoTjIyeLNBX0,737
+cidc_api/models/db/stage2/base_orm.py,sha256=nk9q0wlHxbuC7vzMtPCsnqeIRQufh3MCniMxu-h7__w,246
+cidc_api/models/db/stage2/baseline_clinical_assessment_orm.py,sha256=FmSXM7yCl0XVHdAdYPFmSwZoZxeOHD3I8f78h9uM0dk,953
+cidc_api/models/db/stage2/cohort_orm.py,sha256=E0vWv_0rjwI_cAlDzVGp-loSSPlpuHHO3qbgXwc3WCg,740
+cidc_api/models/db/stage2/comorbidity_orm.py,sha256=Lky_lD8WN0n78gjQ1q6az3E8h2aAHeYob3XUtB9DAK4,923
+cidc_api/models/db/stage2/consent_group_orm.py,sha256=k1nMfd3NuDoYHwU9HR0R9B4FTuw3Evc3cDxQJcw59iE,1141
+cidc_api/models/db/stage2/contact_orm.py,sha256=7nmWtTl3UkO-GFOdiAYTT6_094S1Ozvlcn8fdEsbxeE,1309
+cidc_api/models/db/stage2/demographic_orm.py,sha256=MiTa-Sk9kGcN1Y4O7aDpMtEDEcvY67VXfwEuALXQn_g,1735
+cidc_api/models/db/stage2/disease_orm.py,sha256=ws20FYQkiucyyzuXF2xVurke3_Uf0rFFMfOr9TaYG24,2007
+cidc_api/models/db/stage2/exposure_orm.py,sha256=q1x6GQWvMyJub_QGkXqYggzrvX8_w3QLkUhaj-AzxD8,853
+cidc_api/models/db/stage2/file_orm.py,sha256=Nso0j6BB4WrHUzXcWyxwwTD-jypnxH6pA7GUOsYyXsg,1283
+cidc_api/models/db/stage2/gvhd_diagnosis_acute_orm.py,sha256=MIjVCSSSeX5N_kNWgCXd_AtQDshwZ8SjtICrBRdhBnA,1500
+cidc_api/models/db/stage2/gvhd_diagnosis_chronic_orm.py,sha256=BhlEkGgdZ84G3LOOkcav6M3DKrsDbrbbHMflyn5ikyM,1582
+cidc_api/models/db/stage2/gvhd_organ_acute_orm.py,sha256=B3RTyBtJhSGhKH-1yFZlU5ytko8kPMu3IEJKL080dok,880
+cidc_api/models/db/stage2/gvhd_organ_chronic_orm.py,sha256=FJoQxMv5sQbYyk4_YU77O7h_7NRzlwUOJqCimxYyN6s,904
+cidc_api/models/db/stage2/institution_orm.py,sha256=V58qEfnrhHjPHhYj-udGUqDsvSYb4QHE2eLQdoCdjU4,1278
+cidc_api/models/db/stage2/medical_history_orm.py,sha256=wUVno1vQqMM64YwFng8a-qJgdDGfRNkmMDgo_0cX7dY,1324
+cidc_api/models/db/stage2/other_clinical_endpoint_orm.py,sha256=imK4n7_tHYCNIBVVoQKQNhVVL2x7eE69_9VqBW23Y2I,1133
+cidc_api/models/db/stage2/other_malignancy_orm.py,sha256=opTfuRBl54R-HMvbHjewOLpB79DInfG1x8d3IMmQdaA,1345
+cidc_api/models/db/stage2/participant_orm.py,sha256=CKk4aHjxnDr0ERHG_0jt8fGAqXIEVkqa9k3oqYqnMzE,3725
+cidc_api/models/db/stage2/prior_treatment_orm.py,sha256=xHVnfsxpVSd2JPOojTa7ASB0W0BYISAUjgY4BwwVCoU,1347
+cidc_api/models/db/stage2/publication_orm.py,sha256=u8lkD3Ssbju5t20pOSTt7dZ7Pih25c90ACEhWOULkEU,1070
+cidc_api/models/db/stage2/radiotherapy_dose_orm.py,sha256=bYnh3vBLVA6jNuwDObF3XHkWfEKqRXKH2cfV7BEzNlQ,1542
+cidc_api/models/db/stage2/response_by_system_orm.py,sha256=EBS_P85k0uJNR2-CXygtwm2x2e1umDyyvO_CpkxgraU,1566
+cidc_api/models/db/stage2/response_orm.py,sha256=G5XdroBUKdYva752hbaPsloyRwf7zjrIT6vEhGWlKEY,1205
+cidc_api/models/db/stage2/shipment_orm.py,sha256=dyOhtghwaJCiXk5kis6bkBhfiZyOzKQibNtj_HE5SVQ,2037
+cidc_api/models/db/stage2/shipment_specimen_orm.py,sha256=ozG6CTQ1mPXgOx3_yHrIDQ-CQjtDg1Z2TPMMwX1PrRk,951
+cidc_api/models/db/stage2/specimen_orm.py,sha256=caeHreuRpQek13J_RDXtOet2xzqwfTFbwqN-xNeUcPM,4207
+cidc_api/models/db/stage2/stem_cell_transplant_orm.py,sha256=rrRjW_ZZw7tN5gAXju7ZWAinoVmoNCzjvxlWV71lYx8,1132
+cidc_api/models/db/stage2/surgery_orm.py,sha256=K6FYSQTjXt3OvHUSSoxhAnobAk1oUHpaIgN4dffqr14,1060
+cidc_api/models/db/stage2/therapy_agent_dose_orm.py,sha256=sqxiEhZsuQ-Zn_Wdwf2oJmwjU5A0sq60lgPh7irIj-s,1348
+cidc_api/models/db/stage2/treatment_orm.py,sha256=xGgLSzIgoWpNylnCZAWQ2NElHCGKFmYMnrgqrnSANoQ,1961
+cidc_api/models/db/stage2/trial_orm.py,sha256=OPUwv9lm8zLHvQYJ-XPtNqsppwn8IYXAyuyGoYhlpB4,2897
+cidc_api/models/files/__init__.py,sha256=8BMTnUSHzUbz0lBeEQY6NvApxDD3GMWMduoVMos2g4Y,213
+cidc_api/models/files/details.py,sha256=sZkGM7iEV4-J6IDQCdiMV6KBDLbPxCOqUMaU3aY9rX8,65153
+cidc_api/models/files/facets.py,sha256=rG99wUpHvWHkcRDxTcXz40502Er47l_5hKzP-ORvXGE,33621
+cidc_api/models/pydantic/base.py,sha256=6Lsf4fekIS1E-DwZmgCXlfm3Qq9_23dA_v3iz1w2JoA,1427
+cidc_api/models/pydantic/stage1/__init__.py,sha256=H-NDjCd8isHTgZ7sqz-MIbzC-PpW1kEtR-x-Dyc8r6Q,1667
+cidc_api/models/pydantic/stage1/additional_treatment.py,sha256=TFVzjd1NPLSfH9UnL2W3aZhpZSzDsg97j9IK8t882YA,1050
+cidc_api/models/pydantic/stage1/adverse_event.py,sha256=zPy02xoRQeyaXBSmqDdQt4BaRTD6OHBjycVHVtBaAow,3880
+cidc_api/models/pydantic/stage1/baseline_clinical_assessment.py,sha256=5FYvtOVf_nIK1h3xTs3vQgJe2ivQSVHt_wfrTSDgVxU,1119
+cidc_api/models/pydantic/stage1/comorbidity.py,sha256=dk4SJnkaaju-boexf2SW_rNNGXl-Os2LR5lnIxCb-dA,1413
+cidc_api/models/pydantic/stage1/consent_group.py,sha256=aP_nd0GKK6K7VH-6IZRSDDX2RxFM_j9B36FIRGwysOU,1216
+cidc_api/models/pydantic/stage1/demographic.py,sha256=X0YoFdK7S8JQ9p_Jm3l-R5HgEl9sZnZVFXrECA2i_zw,6007
+cidc_api/models/pydantic/stage1/disease.py,sha256=fwK1FSxTm33BzViGTNsb6AahoDc2BTTXMitCGY3KyDk,7650
+cidc_api/models/pydantic/stage1/exposure.py,sha256=ERoVQLuNWynw2zugh5bVdUT0NzNbJ6fIUmKhPSCQfqk,1306
+cidc_api/models/pydantic/stage1/gvhd_diagnosis_acute.py,sha256=jVMoWuLfspOZtOpC7rg1EzdvEAg8qEabcTaS6RRobZ8,1395
+cidc_api/models/pydantic/stage1/gvhd_diagnosis_chronic.py,sha256=SRwkAL07YyIZM4bYCqm01aKqSvj3yRmpsqFKxAZEZoM,1382
+cidc_api/models/pydantic/stage1/gvhd_organ_acute.py,sha256=VxlNGRJYjm9tW2lyLll8pD0t9JZs18gicnH-Ci_nR2I,771
+cidc_api/models/pydantic/stage1/gvhd_organ_chronic.py,sha256=Fnp1Qm-ZDDtDLrgOAnEOUnQVNWI9WrTSomiFPStGmjc,810
+cidc_api/models/pydantic/stage1/medical_history.py,sha256=IXtEvXrrLhTt6JEsj2MpDiZtLAkmrrsUS4aoe7sxans,1697
+cidc_api/models/pydantic/stage1/other_malignancy.py,sha256=V-Jru6uukipocKs7lDbmkGyJsHBxlM3A3NJoTShjJ9I,2188
+cidc_api/models/pydantic/stage1/participant.py,sha256=iDQrwYYtJY_XrkdbhsRNZuL44ighvW8JHCGxH-qo8jk,2199
+cidc_api/models/pydantic/stage1/prior_treatment.py,sha256=axhyPHwYCoIvcIonjyPJ95HUyaAXqIuOd6hhoDM3LJU,2101
+cidc_api/models/pydantic/stage1/radiotherapy_dose.py,sha256=c5q0TxPOrYHX9KTd9he5B01zirKgcCxMnvW_7adzCrI,3327
+cidc_api/models/pydantic/stage1/response.py,sha256=rPqfYZhaZRcA1E7dkGOaHe9f2_YIcIg9-KtIPSTh1s8,2886
+cidc_api/models/pydantic/stage1/response_by_system.py,sha256=f8ZnLfNXGJLCfFL1X2jxlSUJPGvJKnOCf6PYbJVMXW8,4909
+cidc_api/models/pydantic/stage1/specimen.py,sha256=scDekZ-RtXOQTTLburhqT3RF4KM34iY9NAV1wYi_HSg,1281
+cidc_api/models/pydantic/stage1/stem_cell_transplant.py,sha256=XsDVUksqbIprPxHwLlwHGyji4jsIFNMcIk-S0H4rDnQ,1228
+cidc_api/models/pydantic/stage1/surgery.py,sha256=53NrET_kNOlXXPP-mH5ecIPrNqDpDQt5s9WfsjPDM-s,2149
+cidc_api/models/pydantic/stage1/therapy_agent_dose.py,sha256=Y2L0vAqkfA5eI2qg7iQrqzCORwbkjyVEsthc6f5HKas,3021
+cidc_api/models/pydantic/stage1/treatment.py,sha256=1TeBaDJ352IfB10AtJH2iREdex3SZgDRXNUkhT0FZMo,2033
+cidc_api/models/pydantic/stage1/trial.py,sha256=EFsMVMxxHbPeaBb6JG9JpX1qjtoho2t-GZnaI0gsYrY,1859
+cidc_api/models/pydantic/stage2/__init__.py,sha256=OQRG5wFkNsyAU_0KI1W5PDn8pBDe1EJDcgKZ19shh_g,2331
+cidc_api/models/pydantic/stage2/additional_treatment.py,sha256=TFVzjd1NPLSfH9UnL2W3aZhpZSzDsg97j9IK8t882YA,1050
+cidc_api/models/pydantic/stage2/administrative_person.py,sha256=3UYRgGLP7RukwZYTvQEnviDxBvWXj1uqditsoLJOw0s,1552
+cidc_api/models/pydantic/stage2/administrative_role_assignment.py,sha256=kWUciVSnczjejdBSlynsVxSQ4dytDdgw9OxSvgzParg,536
+cidc_api/models/pydantic/stage2/adverse_event.py,sha256=zPy02xoRQeyaXBSmqDdQt4BaRTD6OHBjycVHVtBaAow,3880
+cidc_api/models/pydantic/stage2/arm.py,sha256=I_gyRUkjyA-Eds3BOu-PUlBGdeGeKiG92ERM8WqA2n8,481
+cidc_api/models/pydantic/stage2/baseline_clinical_assessment.py,sha256=5FYvtOVf_nIK1h3xTs3vQgJe2ivQSVHt_wfrTSDgVxU,1119
+cidc_api/models/pydantic/stage2/cohort.py,sha256=NVlgp8D93nXGPDMSyrAJe-QbmrQfudyuTsc400WyOpg,493
+cidc_api/models/pydantic/stage2/comorbidity.py,sha256=dk4SJnkaaju-boexf2SW_rNNGXl-Os2LR5lnIxCb-dA,1413
+cidc_api/models/pydantic/stage2/consent_group.py,sha256=aP_nd0GKK6K7VH-6IZRSDDX2RxFM_j9B36FIRGwysOU,1216
+cidc_api/models/pydantic/stage2/contact.py,sha256=Nfyy5Zn-n9_LiXG-CzC7OsQo7JrzdPcYjZIielpZiM0,883
+cidc_api/models/pydantic/stage2/demographic.py,sha256=X0YoFdK7S8JQ9p_Jm3l-R5HgEl9sZnZVFXrECA2i_zw,6007
+cidc_api/models/pydantic/stage2/disease.py,sha256=fwK1FSxTm33BzViGTNsb6AahoDc2BTTXMitCGY3KyDk,7650
+cidc_api/models/pydantic/stage2/exposure.py,sha256=ERoVQLuNWynw2zugh5bVdUT0NzNbJ6fIUmKhPSCQfqk,1306
+cidc_api/models/pydantic/stage2/file.py,sha256=MjZQAII_QqakLBhyfP1bq_Mn6au4yvVuwY0p0A5c664,1336
+cidc_api/models/pydantic/stage2/gvhd_diagnosis_acute.py,sha256=jVMoWuLfspOZtOpC7rg1EzdvEAg8qEabcTaS6RRobZ8,1395
+cidc_api/models/pydantic/stage2/gvhd_diagnosis_chronic.py,sha256=SRwkAL07YyIZM4bYCqm01aKqSvj3yRmpsqFKxAZEZoM,1382
+cidc_api/models/pydantic/stage2/gvhd_organ_acute.py,sha256=VxlNGRJYjm9tW2lyLll8pD0t9JZs18gicnH-Ci_nR2I,771
+cidc_api/models/pydantic/stage2/gvhd_organ_chronic.py,sha256=Fnp1Qm-ZDDtDLrgOAnEOUnQVNWI9WrTSomiFPStGmjc,810
+cidc_api/models/pydantic/stage2/institution.py,sha256=41Lod9ryjB3x2jySHp_g3b7g1sj41Q4zwcNsGgXMGZ4,268
+cidc_api/models/pydantic/stage2/medical_history.py,sha256=IXtEvXrrLhTt6JEsj2MpDiZtLAkmrrsUS4aoe7sxans,1697
+cidc_api/models/pydantic/stage2/other_clinical_endpoint.py,sha256=bxZV3qIrrieX4xy3HbKyHdgfpwBcT-abQNlSodVCMns,1093
+cidc_api/models/pydantic/stage2/other_malignancy.py,sha256=V-Jru6uukipocKs7lDbmkGyJsHBxlM3A3NJoTShjJ9I,2188
+cidc_api/models/pydantic/stage2/participant.py,sha256=x7gKHaw46-BbqNCgKWPLnp7U8L2pnAkh7hdByKvG_Kk,2185
+cidc_api/models/pydantic/stage2/prior_treatment.py,sha256=G5Cd8PSYRe3gdeApjQWn15QAErB4nDahMKcVRsr88_c,2011
+cidc_api/models/pydantic/stage2/publication.py,sha256=GBuvqBf0lyOoopN1S-3qX310xFxhixk7oDJLuGzLuiw,1817
+cidc_api/models/pydantic/stage2/radiotherapy_dose.py,sha256=c5q0TxPOrYHX9KTd9he5B01zirKgcCxMnvW_7adzCrI,3327
+cidc_api/models/pydantic/stage2/response.py,sha256=rPqfYZhaZRcA1E7dkGOaHe9f2_YIcIg9-KtIPSTh1s8,2886
+cidc_api/models/pydantic/stage2/response_by_system.py,sha256=f8ZnLfNXGJLCfFL1X2jxlSUJPGvJKnOCf6PYbJVMXW8,4909
+cidc_api/models/pydantic/stage2/shipment.py,sha256=dsZcDPikCRS3cjr58EGHHJ2gjir78J4cdHh_1SwFyrQ,1595
+cidc_api/models/pydantic/stage2/shipment_specimen.py,sha256=exR7joXsH3Xd-o5vJV_Z-az33Edr8BBm5LCDv01iMI4,488
+cidc_api/models/pydantic/stage2/specimen.py,sha256=JchTeb4QSyPplZmP_gMxEsaIXVDlGI_z85xR5JG4JYY,8524
+cidc_api/models/pydantic/stage2/stem_cell_transplant.py,sha256=XsDVUksqbIprPxHwLlwHGyji4jsIFNMcIk-S0H4rDnQ,1228
+cidc_api/models/pydantic/stage2/surgery.py,sha256=53NrET_kNOlXXPP-mH5ecIPrNqDpDQt5s9WfsjPDM-s,2149
+cidc_api/models/pydantic/stage2/therapy_agent_dose.py,sha256=Y2L0vAqkfA5eI2qg7iQrqzCORwbkjyVEsthc6f5HKas,3021
+cidc_api/models/pydantic/stage2/treatment.py,sha256=dr23yeK5x0dKYZV32hgECFe_Y-GkSvdf4P3FdVn6F1Q,2039
+cidc_api/models/pydantic/stage2/trial.py,sha256=PftvFY27s3quVBg1Sau1JdskUSMM0huIeGP-018fi5o,4020
+cidc_api/reference/ctcae.py,sha256=H5JvDQ5R5kYbK37UxjhmXMnKD3d40HmG0DONxfhNxnE,871
+cidc_api/reference/gvhd.py,sha256=r5jbHEa5yos0tmghjiruAeXI-r-4lU81JKCUpMHtO14,194
+cidc_api/reference/icd10cm.py,sha256=K1vbTQB75uAQeKgj0U9izhtMKVb2vqp69_hyx3z_jro,300
+cidc_api/reference/icdo3.py,sha256=A19yNX5-9Gs3X83kXcTlGgsXDTTJ9yR2dxEIoBVmpmU,296
+cidc_api/reference/uberon.py,sha256=BO2mYNDvPzZyLdhL_ZjCyEgHSLHuVifnTJvfktUfVWA,148
+cidc_api/shared/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+cidc_api/shared/assay_handling.py,sha256=zzWSqQ-ddLVzX5IuHvsaSib2H1lnjXpo9LbxaoqaHHs,2897
+cidc_api/shared/auth.py,sha256=EIP9AKokLNrI79Fkpv3P7WdzaddJIsuGGICc1W494X0,9110
+cidc_api/shared/email_layout.html,sha256=pBoTNw3ACHH-ncZFaNvcy5bXMqPwizR78usb0uCYtIc,7670
+cidc_api/shared/emails.py,sha256=8kNFEaSnKpY-GX_iE59QUhSp3c4_uzy3SpHYt2QjuqI,6121
+cidc_api/shared/file_handling.py,sha256=ahzVZnhg23DloaopKVvCzgw_vHc6c8vxxZdAKR38sjI,5636
+cidc_api/shared/gcloud_client.py,sha256=l40qQ0lo2QQkWfarXlApmI7iPeYzYoEEXBvemyizYnc,38421
+cidc_api/shared/jose.py,sha256=-qzGzEDAlokEp9E7WtBtQkXyyfPWTYXlwYpCqVJWmqM,1830
+cidc_api/shared/rest_utils.py,sha256=RwR30WOUAYCxL7V-i2totEyeriG30GbBDvBcpLXhM9w,6594
+cidc_api/shared/utils.py,sha256=-gLnzxCR9E6h0plt2xrNisUG5_Y6GhhVwz3DgDIzpvs,367
+nci_cidc_api_modules-1.2.41.dist-info/licenses/LICENSE,sha256=pNYWVTHaYonnmJyplmeAp7tQAjosmDpAWjb34jjv7Xs,1102
+nci_cidc_api_modules-1.2.41.dist-info/METADATA,sha256=I7Jv9_ZUIGpztAc2otMlUdxEQLqrdE5oUq0c4s-uqOM,40229
+nci_cidc_api_modules-1.2.41.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+nci_cidc_api_modules-1.2.41.dist-info/top_level.txt,sha256=rNiRzL0lJGi5Q9tY9uSoMdTbJ-7u5c_D2E86KA94yRA,9
+nci_cidc_api_modules-1.2.41.dist-info/RECORD,,