nci-cidc-api-modules 1.2.34__py3-none-any.whl → 1.2.53__py3-none-any.whl

{nci_cidc_api_modules-1.2.34.dist-info → nci_cidc_api_modules-1.2.53.dist-info}/METADATA

@@ -1,39 +1,49 @@
 Metadata-Version: 2.4
 Name: nci_cidc_api_modules
-Version: 1.2.34
+Version: 1.2.53
 Summary: SQLAlchemy data models and configuration tools used in the NCI CIDC API
 Home-page: https://github.com/NCI-CIDC/cidc-api-gae
 License: MIT license
 Requires-Python: >=3.13
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: certifi>=2025.11.12
-Requires-Dist: cloud-sql-python-connector[pg8000]>=1.18.5
+Requires-Dist: cachetools>=6.2.4
+Requires-Dist: certifi>=2026.1.4
+Requires-Dist: cloud-sql-python-connector[pg8000]>=1.20.0
 Requires-Dist: flask>=3.1.2
 Requires-Dist: flask-migrate>=4.1.0
 Requires-Dist: flask-sqlalchemy>=3.1.1
 Requires-Dist: flask-talisman>=0.7.0
-Requires-Dist: google-auth==2.43.0
-Requires-Dist: google-api-python-client>=2.187.0
-Requires-Dist: google-cloud-bigquery>=3.38.0
-Requires-Dist: google-cloud-pubsub>=2.33.0
-Requires-Dist: google-cloud-secret-manager>=2.25.0
-Requires-Dist: google-cloud-storage>=3.6.0
+Requires-Dist: gcloud-aio-storage~=9.6.1
+Requires-Dist: google-api-python-client>=2.188.0
+Requires-Dist: google-auth==2.47.0
+Requires-Dist: google-cloud-bigquery>=3.40.0
+Requires-Dist: google-cloud-pubsub>=2.34.0
+Requires-Dist: google-cloud-secret-manager>=2.26.0
+Requires-Dist: google-cloud-storage>=3.8.0
 Requires-Dist: jinja2>=3.1.6
-Requires-Dist: joserfc>=1.5.0
-Requires-Dist: marshmallow>=4.1.0
+Requires-Dist: joserfc>=1.6.1
+Requires-Dist: marshmallow>=4.2.0
 Requires-Dist: marshmallow-sqlalchemy>=1.4.2
-Requires-Dist: numpy>=2.3.5
+Requires-Dist: numpy>=2.4.1
 Requires-Dist: packaging>=25.0
 Requires-Dist: pandas>=2.3.3
 Requires-Dist: pyarrow>=22.0.0
 Requires-Dist: pydantic~=2.12.5
 Requires-Dist: python-dotenv>=1.2.1
 Requires-Dist: requests>=2.32.5
-Requires-Dist: sqlalchemy>=2.0.44
+Requires-Dist: sqlalchemy>=2.0.45
 Requires-Dist: sqlalchemy-mixins~=2.0.5
-Requires-Dist: werkzeug>=3.1.4
-Requires-Dist: nci-cidc-schemas==0.28.10
+Requires-Dist: werkzeug>=3.1.5
+Requires-Dist: opentelemetry-api>=1.39.1
+Requires-Dist: opentelemetry-exporter-otlp-proto-grpc>=1.39.1
+Requires-Dist: opentelemetry-sdk>=1.39.1
+Requires-Dist: opentelemetry-instrumentation-flask>=0.59b0
+Requires-Dist: opentelemetry-instrumentation-requests>=0.59b0
+Requires-Dist: opentelemetry-instrumentation-sqlalchemy>=0.59b0
+Requires-Dist: opentelemetry-exporter-gcp-trace>=1.11.0
+Requires-Dist: opentelemetry-propagator-gcp>=1.11.0
+Requires-Dist: nci-cidc-schemas==0.28.12
 Dynamic: description
 Dynamic: description-content-type
 Dynamic: home-page

nci_cidc_api_modules-1.2.53.dist-info/RECORD

@@ -0,0 +1,167 @@
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+nci_cidc_api_modules-1.2.53.dist-info/METADATA,sha256=JWWYI8eyF0_QbM-bqoNO5N_jsnoocDjNiwKR1Ba4x9Y,40301
+nci_cidc_api_modules-1.2.53.dist-info/WHEEL,sha256=wUyA8OaulRlbfwMtmQsvNngGrxQHAvkKcvRmdizlJi0,92
+nci_cidc_api_modules-1.2.53.dist-info/top_level.txt,sha256=BSJqF6ura8-bWCKZvarvQEKvidMM05lH0bLQsNOrI0o,14
+nci_cidc_api_modules-1.2.53.dist-info/RECORD,,

{nci_cidc_api_modules-1.2.34.dist-info → nci_cidc_api_modules-1.2.53.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (80.9.0)
+Generator: setuptools (80.10.2)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

{nci_cidc_api_modules-1.2.34.dist-info → nci_cidc_api_modules-1.2.53.dist-info}/top_level.txt

@@ -1 +1,2 @@
+boot
 cidc_api

cidc_api/models/db/base_orm.py

@@ -1,25 +0,0 @@
-from typing import Self
-
-from sqlalchemy_mixins import SerializeMixin, ReprMixin
-
-from cidc_api.config.db import db
-
-
-class BaseORM(db.Model, ReprMixin, SerializeMixin):
-    __abstract__ = True
-    __repr__ = ReprMixin.__repr__
-
-    def merge(self, d: dict) -> Self:
-        """Merge keys and values from dict d into this model, overwriting as necessary."""
-        for key, value in d.items():
-            setattr(self, key, value)
-        return self
-
-    def clone(self) -> "BaseORM":
-        """Clones a SQLAlchemy ORM object, excluding primary keys."""
-        mapper = self.__mapper__
-        new_instance = self.__class__()
-        for column in mapper.columns:
-            if not column.primary_key:
-                setattr(new_instance, column.key, getattr(self, column.key))
-        return new_instance

cidc_api/models/pydantic/stage2/base.py

@@ -1,48 +0,0 @@
-from pydantic import BaseModel, ConfigDict
-from contextlib import contextmanager
-
-import copy
-
-
-class Base(BaseModel):
-
-    model_config = ConfigDict(
-        validate_assignment=True,
-        from_attributes=True,
-        # extra="forbid" # TODO: enable me one stage1 models are implemented
-    )
-
-    # Validates the new state and updates the object if valid
-    def update(self, **kwargs):
-        self.model_validate(self.__dict__ | kwargs)
-        self.__dict__.update(kwargs)
-
-    # CM that delays validation until all fields are applied.
-    # If validation fails the original fields are restored and the ValidationError is raised.
-    @contextmanager
-    def delay_validation(self):
-        original_dict = copy.deepcopy(self.__dict__)
-        self.model_config["validate_assignment"] = False
-        try:
-            yield
-        finally:
-            self.model_config["validate_assignment"] = True
-        try:
-            self.model_validate(self.__dict__)
-        except:
-            self.__dict__.update(original_dict)
-            raise
-
-    @classmethod
-    def split_list(cls, val):
-        """Listify fields that are multi-valued in input data, e.g. 'lung|kidney'"""
-        if type(val) == list:
-            return val
-        elif type(val) == str:
-            if not val:
-                return []
-            return val.split("|")
-        elif val == None:
-            return []
-        else:
-            raise ValueError("Field value must be string or list")

nci_cidc_api_modules-1.2.34.dist-info/RECORD

@@ -1,109 +0,0 @@
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-cidc_api/config/logging.py,sha256=abhVYtn8lfhIt0tyV2WHFgSmp_s2eeJh7kodB6LH4J0,1149
-cidc_api/config/secrets.py,sha256=jRFj7W43pWuPf9DZQLCKF7WPXf5cUv-BAaS3ASqhV_Q,1481
-cidc_api/config/settings.py,sha256=ttOGvk_6zVMn4dtxIZ2-0w3wF2fpAUVfGpVZbKJ2b6s,4653
-cidc_api/models/__init__.py,sha256=cTyK0Z1ttLo9itwZVRFr-d6aX-zX633YhqipqPgoGfE,115
-cidc_api/models/data.py,sha256=uLkgAJ6tCtsi3bOGt8I9esYrZqgbsTYM1rGfL2gx5sY,837
-cidc_api/models/migrations.py,sha256=UlS5How3J4ryaRuZT6F5VQtAKikkl0LTv9MgMO_ltiQ,11161
-cidc_api/models/models.py,sha256=zGOvQMe86kLqC_bbB9ezrBYL9QNA_4GrtYhRGGeqOcU,148525
-cidc_api/models/schemas.py,sha256=6IE2dJoEMcMbi0Vr1V3cYKnPKU0hv9vRKBixOZHe88s,2766
-cidc_api/models/types.py,sha256=nq_PvzDz67HzceOI_ve9AxReExAZ-XFE7T3G2bbpqJ4,29667
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