nci-cidc-api-modules 1.2.29__py3-none-any.whl → 1.2.45__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (148) hide show
  1. cidc_api/__init__.py +1 -0
  2. cidc_api/config/db.py +21 -1
  3. cidc_api/config/settings.py +1 -0
  4. cidc_api/models/__init__.py +0 -2
  5. cidc_api/models/data.py +17 -4
  6. cidc_api/models/db/stage1/__init__.py +56 -0
  7. cidc_api/models/db/stage1/additional_treatment_orm.py +22 -0
  8. cidc_api/models/db/stage1/adverse_event_orm.py +46 -0
  9. cidc_api/models/db/stage1/base_orm.py +7 -0
  10. cidc_api/models/db/stage1/baseline_clinical_assessment_orm.py +22 -0
  11. cidc_api/models/db/stage1/comorbidity_orm.py +23 -0
  12. cidc_api/models/db/stage1/consent_group_orm.py +32 -0
  13. cidc_api/models/db/stage1/demographic_orm.py +47 -0
  14. cidc_api/models/db/stage1/disease_orm.py +52 -0
  15. cidc_api/models/db/stage1/exposure_orm.py +22 -0
  16. cidc_api/models/db/stage1/gvhd_diagnosis_acute_orm.py +34 -0
  17. cidc_api/models/db/stage1/gvhd_diagnosis_chronic_orm.py +36 -0
  18. cidc_api/models/db/stage1/gvhd_organ_acute_orm.py +21 -0
  19. cidc_api/models/db/stage1/gvhd_organ_chronic_orm.py +21 -0
  20. cidc_api/models/db/stage1/medical_history_orm.py +30 -0
  21. cidc_api/models/db/stage1/other_malignancy_orm.py +29 -0
  22. cidc_api/models/db/stage1/participant_orm.py +77 -0
  23. cidc_api/models/db/stage1/prior_treatment_orm.py +29 -0
  24. cidc_api/models/db/stage1/radiotherapy_dose_orm.py +39 -0
  25. cidc_api/models/db/stage1/response_by_system_orm.py +30 -0
  26. cidc_api/models/db/stage1/response_orm.py +28 -0
  27. cidc_api/models/db/stage1/specimen_orm.py +46 -0
  28. cidc_api/models/db/stage1/stem_cell_transplant_orm.py +25 -0
  29. cidc_api/models/db/stage1/surgery_orm.py +27 -0
  30. cidc_api/models/db/stage1/therapy_agent_dose_orm.py +31 -0
  31. cidc_api/models/db/stage1/treatment_orm.py +38 -0
  32. cidc_api/models/db/stage1/trial_orm.py +35 -0
  33. cidc_api/models/db/stage2/additional_treatment_orm.py +8 -8
  34. cidc_api/models/db/stage2/administrative_person_orm.py +4 -4
  35. cidc_api/models/db/stage2/administrative_role_assignment_orm.py +4 -4
  36. cidc_api/models/db/stage2/adverse_event_orm.py +12 -13
  37. cidc_api/models/db/stage2/arm_orm.py +3 -3
  38. cidc_api/models/db/stage2/base_orm.py +7 -0
  39. cidc_api/models/db/stage2/baseline_clinical_assessment_orm.py +6 -7
  40. cidc_api/models/db/stage2/cohort_orm.py +3 -3
  41. cidc_api/models/db/stage2/comorbidity_orm.py +7 -8
  42. cidc_api/models/db/stage2/consent_group_orm.py +5 -4
  43. cidc_api/models/db/stage2/contact_orm.py +16 -20
  44. cidc_api/models/db/stage2/demographic_orm.py +11 -8
  45. cidc_api/models/db/stage2/disease_orm.py +13 -14
  46. cidc_api/models/db/stage2/exposure_orm.py +5 -4
  47. cidc_api/models/db/stage2/file_orm.py +6 -9
  48. cidc_api/models/db/stage2/gvhd_diagnosis_acute_orm.py +5 -4
  49. cidc_api/models/db/stage2/gvhd_diagnosis_chronic_orm.py +5 -6
  50. cidc_api/models/db/stage2/gvhd_organ_acute_orm.py +4 -3
  51. cidc_api/models/db/stage2/gvhd_organ_chronic_orm.py +4 -3
  52. cidc_api/models/db/stage2/institution_orm.py +7 -7
  53. cidc_api/models/db/stage2/medical_history_orm.py +10 -9
  54. cidc_api/models/db/stage2/other_clinical_endpoint_orm.py +8 -12
  55. cidc_api/models/db/stage2/other_malignancy_orm.py +10 -11
  56. cidc_api/models/db/stage2/participant_orm.py +28 -28
  57. cidc_api/models/db/stage2/prior_treatment_orm.py +15 -14
  58. cidc_api/models/db/stage2/publication_orm.py +9 -11
  59. cidc_api/models/db/stage2/radiotherapy_dose_orm.py +9 -9
  60. cidc_api/models/db/stage2/response_by_system_orm.py +5 -3
  61. cidc_api/models/db/stage2/response_orm.py +6 -5
  62. cidc_api/models/db/stage2/shipment_orm.py +17 -17
  63. cidc_api/models/db/stage2/shipment_specimen_orm.py +4 -4
  64. cidc_api/models/db/stage2/specimen_orm.py +7 -6
  65. cidc_api/models/db/stage2/stem_cell_transplant_orm.py +7 -7
  66. cidc_api/models/db/stage2/surgery_orm.py +7 -7
  67. cidc_api/models/db/stage2/therapy_agent_dose_orm.py +8 -8
  68. cidc_api/models/db/stage2/treatment_orm.py +16 -15
  69. cidc_api/models/db/stage2/trial_orm.py +34 -33
  70. cidc_api/models/files/facets.py +4 -0
  71. cidc_api/models/models.py +154 -9
  72. cidc_api/models/pydantic/{stage2/base.py → base.py} +19 -1
  73. cidc_api/models/pydantic/stage1/__init__.py +56 -0
  74. cidc_api/models/pydantic/stage1/additional_treatment.py +23 -0
  75. cidc_api/models/pydantic/stage1/adverse_event.py +100 -0
  76. cidc_api/models/pydantic/stage1/baseline_clinical_assessment.py +23 -0
  77. cidc_api/models/pydantic/stage1/comorbidity.py +36 -0
  78. cidc_api/models/pydantic/stage1/consent_group.py +30 -0
  79. cidc_api/models/pydantic/stage1/demographic.py +123 -0
  80. cidc_api/models/pydantic/stage1/disease.py +158 -0
  81. cidc_api/models/pydantic/stage1/exposure.py +32 -0
  82. cidc_api/models/pydantic/stage1/gvhd_diagnosis_acute.py +33 -0
  83. cidc_api/models/pydantic/stage1/gvhd_diagnosis_chronic.py +32 -0
  84. cidc_api/models/pydantic/stage1/gvhd_organ_acute.py +22 -0
  85. cidc_api/models/pydantic/stage1/gvhd_organ_chronic.py +23 -0
  86. cidc_api/models/pydantic/stage1/medical_history.py +36 -0
  87. cidc_api/models/pydantic/stage1/other_malignancy.py +49 -0
  88. cidc_api/models/pydantic/stage1/participant.py +51 -0
  89. cidc_api/models/pydantic/stage1/prior_treatment.py +45 -0
  90. cidc_api/models/pydantic/stage1/radiotherapy_dose.py +79 -0
  91. cidc_api/models/pydantic/stage1/response.py +65 -0
  92. cidc_api/models/pydantic/stage1/response_by_system.py +112 -0
  93. cidc_api/models/pydantic/stage1/specimen.py +31 -0
  94. cidc_api/models/pydantic/stage1/stem_cell_transplant.py +35 -0
  95. cidc_api/models/pydantic/stage1/surgery.py +49 -0
  96. cidc_api/models/pydantic/stage1/therapy_agent_dose.py +67 -0
  97. cidc_api/models/pydantic/stage1/treatment.py +50 -0
  98. cidc_api/models/pydantic/stage1/trial.py +45 -0
  99. cidc_api/models/pydantic/stage2/additional_treatment.py +5 -5
  100. cidc_api/models/pydantic/stage2/administrative_person.py +1 -1
  101. cidc_api/models/pydantic/stage2/administrative_role_assignment.py +2 -2
  102. cidc_api/models/pydantic/stage2/adverse_event.py +2 -2
  103. cidc_api/models/pydantic/stage2/arm.py +2 -2
  104. cidc_api/models/pydantic/stage2/baseline_clinical_assessment.py +2 -2
  105. cidc_api/models/pydantic/stage2/cohort.py +1 -1
  106. cidc_api/models/pydantic/stage2/comorbidity.py +1 -1
  107. cidc_api/models/pydantic/stage2/consent_group.py +2 -2
  108. cidc_api/models/pydantic/stage2/contact.py +1 -1
  109. cidc_api/models/pydantic/stage2/demographic.py +27 -18
  110. cidc_api/models/pydantic/stage2/disease.py +33 -19
  111. cidc_api/models/pydantic/stage2/exposure.py +3 -3
  112. cidc_api/models/pydantic/stage2/file.py +2 -2
  113. cidc_api/models/pydantic/stage2/gvhd_diagnosis_acute.py +2 -2
  114. cidc_api/models/pydantic/stage2/gvhd_diagnosis_chronic.py +2 -2
  115. cidc_api/models/pydantic/stage2/gvhd_organ_acute.py +1 -1
  116. cidc_api/models/pydantic/stage2/gvhd_organ_chronic.py +1 -1
  117. cidc_api/models/pydantic/stage2/institution.py +1 -1
  118. cidc_api/models/pydantic/stage2/medical_history.py +2 -2
  119. cidc_api/models/pydantic/stage2/other_clinical_endpoint.py +1 -1
  120. cidc_api/models/pydantic/stage2/other_malignancy.py +12 -8
  121. cidc_api/models/pydantic/stage2/participant.py +10 -6
  122. cidc_api/models/pydantic/stage2/prior_treatment.py +14 -23
  123. cidc_api/models/pydantic/stage2/publication.py +2 -2
  124. cidc_api/models/pydantic/stage2/radiotherapy_dose.py +2 -2
  125. cidc_api/models/pydantic/stage2/response.py +5 -11
  126. cidc_api/models/pydantic/stage2/response_by_system.py +10 -7
  127. cidc_api/models/pydantic/stage2/shipment.py +2 -2
  128. cidc_api/models/pydantic/stage2/shipment_specimen.py +1 -1
  129. cidc_api/models/pydantic/stage2/specimen.py +8 -5
  130. cidc_api/models/pydantic/stage2/stem_cell_transplant.py +2 -2
  131. cidc_api/models/pydantic/stage2/surgery.py +1 -1
  132. cidc_api/models/pydantic/stage2/therapy_agent_dose.py +1 -1
  133. cidc_api/models/pydantic/stage2/treatment.py +2 -2
  134. cidc_api/models/pydantic/stage2/trial.py +19 -15
  135. cidc_api/models/types.py +45 -42
  136. cidc_api/shared/assay_handling.py +68 -0
  137. cidc_api/shared/auth.py +5 -5
  138. cidc_api/shared/file_handling.py +16 -4
  139. cidc_api/shared/gcloud_client.py +78 -16
  140. cidc_api/shared/utils.py +18 -9
  141. cidc_api/telemetry.py +101 -0
  142. {nci_cidc_api_modules-1.2.29.dist-info → nci_cidc_api_modules-1.2.45.dist-info}/METADATA +25 -14
  143. nci_cidc_api_modules-1.2.45.dist-info/RECORD +165 -0
  144. cidc_api/models/db/base_orm.py +0 -25
  145. nci_cidc_api_modules-1.2.29.dist-info/RECORD +0 -109
  146. {nci_cidc_api_modules-1.2.29.dist-info → nci_cidc_api_modules-1.2.45.dist-info}/WHEEL +0 -0
  147. {nci_cidc_api_modules-1.2.29.dist-info → nci_cidc_api_modules-1.2.45.dist-info}/licenses/LICENSE +0 -0
  148. {nci_cidc_api_modules-1.2.29.dist-info → nci_cidc_api_modules-1.2.45.dist-info}/top_level.txt +0 -0
nci_cidc_api_modules-1.2.29.dist-info/RECORD DELETED
@@ -1,109 +0,0 @@
1
- cidc_api/config/__init__.py,sha256=5mX8GAPxUKV84iS-aGOoE-4m68LsOCGCDptXNdlgvj0,148
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- cidc_api/config/db.py,sha256=CRgpyw7uVP9v7CTAa7_1dcXURqrfjRcLNjGgZC7iPQE,1627
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- cidc_api/config/logging.py,sha256=abhVYtn8lfhIt0tyV2WHFgSmp_s2eeJh7kodB6LH4J0,1149
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- cidc_api/config/secrets.py,sha256=jRFj7W43pWuPf9DZQLCKF7WPXf5cUv-BAaS3ASqhV_Q,1481
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- cidc_api/config/settings.py,sha256=ttOGvk_6zVMn4dtxIZ2-0w3wF2fpAUVfGpVZbKJ2b6s,4653
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- cidc_api/models/__init__.py,sha256=cTyK0Z1ttLo9itwZVRFr-d6aX-zX633YhqipqPgoGfE,115
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- cidc_api/models/data.py,sha256=evv9JJcW3U_g-74MgKdxtB_gGJBTRQjtnsVKwa3DzFE,638
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- cidc_api/models/migrations.py,sha256=UlS5How3J4ryaRuZT6F5VQtAKikkl0LTv9MgMO_ltiQ,11161
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- cidc_api/models/models.py,sha256=2ENATE2dbl93uaKSqveqAVuhv1SvxOkcw4pWDTolng0,148484
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- cidc_api/models/schemas.py,sha256=6IE2dJoEMcMbi0Vr1V3cYKnPKU0hv9vRKBixOZHe88s,2766
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- cidc_api/models/types.py,sha256=9dInLZ6gN39zhEe3xhBXyz2xVMr11CeE1-GCOmT_OjY,29928
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- cidc_api/models/db/base_orm.py,sha256=EV78qFBcOR7spK_PhjbkpsGcmcP33AQItX61SidDa_8,813
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- cidc_api/models/db/stage2/__init__.py,sha256=R33BM1VDKJya5uuyYnPoGFVfhSViclIOklSoHH-EtBQ,2691
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- cidc_api/models/db/stage2/additional_treatment_orm.py,sha256=THBNW7X6h5IyhFrKOCo81fUEgRDFV6NoBmS34740B3s,865
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- cidc_api/models/db/stage2/administrative_person_orm.py,sha256=erXyILdFI7o0RrCW0jB9dyGP6Kdz4vCSXM49EVhA_hQ,1020
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- cidc_api/models/db/stage2/administrative_role_assignment_orm.py,sha256=a8GN66njTPZb3HQAxgTklo3MW--S-uq1HTz3GZfLSJ0,1283
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- cidc_api/models/db/stage2/adverse_event_orm.py,sha256=TfyfyKM-3QBc9BHMSdS1L4hH-esXiQWtw0VnpzXZadM,1928
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- cidc_api/models/db/stage2/arm_orm.py,sha256=YAX1NhA3kiQLzT582G6wDawWv6qor--B_GkIRe4LQDs,697
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- cidc_api/models/db/stage2/baseline_clinical_assessment_orm.py,sha256=Y0hIyhO9hZ6CHn3ZaPtyppBs02LzXoTvZbBhuvikpmw,893
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- cidc_api/models/db/stage2/cohort_orm.py,sha256=tcUYBMwKPW3anye8uEoDM4BS54pGMOGnbjlEleZozSI,700
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- cidc_api/models/db/stage2/comorbidity_orm.py,sha256=9YQI_7PJUvcOvi6b3w6z6Kedi4UxaT9WE17eojl7kCA,883
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- cidc_api/models/db/stage2/consent_group_orm.py,sha256=KFHD9HSGfmQnhjlPMZPZ7nwOcsxw5CisKqfK1lWtql4,1063
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- cidc_api/models/db/stage2/contact_orm.py,sha256=lcfMj0LEcaRKdX2ZInx6n8pYd-rNujqLOPgZYna_d_A,1352
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- cidc_api/models/db/stage2/demographic_orm.py,sha256=GspDappa5hgOIu3o9BSjQSM7kBZViYcZIHpNa3ZLaqo,1551
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- cidc_api/models/db/stage2/disease_orm.py,sha256=xXh77B70DpEkdQzSCqlQL6y3uOXOGP1YbPsxwEWfhco,1995
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- cidc_api/models/db/stage2/exposure_orm.py,sha256=CFYCgtEM07QwSaa2frRLq2beClsAXbG2pekUz_-B74Q,771
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- cidc_api/models/db/stage2/file_orm.py,sha256=tPElXh7ABhAenZmHbgu2LyrDzKw-VK-tdZ-yxkb_YN8,1296
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- cidc_api/models/db/stage2/gvhd_diagnosis_acute_orm.py,sha256=meqNKGmbJh7cUBlzyzRqxvu9ChvyDF0JICj7GyO8vDs,1415
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- cidc_api/models/db/stage2/gvhd_diagnosis_chronic_orm.py,sha256=Ff6a5HRYbdBMnV_riYAF2btE52E5wXOo40HV0cDXHmc,1509
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- cidc_api/models/db/stage2/gvhd_organ_acute_orm.py,sha256=DNzR2LmGu5IeS6iIkAL-AXEEj8ot0fIoQAS7m2giOy4,797
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- cidc_api/models/db/stage2/gvhd_organ_chronic_orm.py,sha256=-IeTmLVB4jJYgzF2BN8PdaVou_OrxjDB2O4xzGd_So8,819
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- cidc_api/models/db/stage2/institution_orm.py,sha256=cvNaAbtdFq2WCIVusHlfTjd-mEYBEMaPfkwgxmdfMn8,1246
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- cidc_api/models/db/stage2/medical_history_orm.py,sha256=TABx11mdwEJtUpoo8g1FBzoTTj6NT0sa_VVyVwdYzEM,1265
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- cidc_api/models/db/stage2/other_clinical_endpoint_orm.py,sha256=acBUKPYGceC74JI7r_WNZ_nidnoQZC-PWj_C1qgADSk,1151
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- cidc_api/models/db/stage2/other_malignancy_orm.py,sha256=kUs5fLeGpDC1gNi8wDqWQ6yEWzCsujK_mhPmx0YXCIs,1226
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- cidc_api/models/db/stage2/participant_orm.py,sha256=yVrOxKDDMJ_FCs1owt4nZXMALQxzeNZ79RoVzF7K_A8,3719
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- cidc_api/models/db/stage2/prior_treatment_orm.py,sha256=RcKjYTNutWb1iIbWkHofV1ckr9wxs4A17UzV5BdqEpo,1234
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- cidc_api/models/db/stage2/publication_orm.py,sha256=fBmdxEihYRqqdBGNDdELn6wEZuLxpvIFPtmDTkKbxzc,1100
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- cidc_api/models/db/stage2/radiotherapy_dose_orm.py,sha256=UlvNsWTrdDHg1Bdm4yphPN4ntY4BAlTOgYWYU4bWPuA,1501
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- cidc_api/models/db/stage2/response_by_system_orm.py,sha256=w8Loh5Z1mbu6NoJNPHX6Mr4Sx6g6i0M7UPqxps2zdDw,1422
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- cidc_api/models/db/stage2/response_orm.py,sha256=QsKa0cbI4DlCRy_dilfo5AWZttdGkDS3NVbQVK0n7LU,1134
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- cidc_api/models/db/stage2/shipment_orm.py,sha256=u7y6hKtmg6DhW8G_tFHj-gFgsqigd8QPrPZu8ZFeMe4,2042
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- cidc_api/models/db/stage2/shipment_specimen_orm.py,sha256=SiIEi5t-BOISgCEgYM9CGqBmr6iLV3HwqXzrTmjJSv8,913
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- cidc_api/models/db/stage2/specimen_orm.py,sha256=Iv6UomXRvl3Is-TxWFQwafTAfZYRiIW76WPtNoDpuNE,4124
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- cidc_api/models/db/stage2/stem_cell_transplant_orm.py,sha256=G59Wm-RjOavNc6d5-wW43Z2hteaY7g8NfWGIADC1D74,1077
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- cidc_api/models/db/stage2/surgery_orm.py,sha256=Jo5abObgZfkEkiMGKFuNGzOWqVwNSGTUdtbfS1VPxRo,1023
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- cidc_api/models/db/stage2/therapy_agent_dose_orm.py,sha256=dgLZnWjt5RRGE7OkMis_tUUEsBvK9eZwHa_6IFMDf_g,1303
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- cidc_api/models/db/stage2/treatment_orm.py,sha256=-SW99MTRDM2Qou0Dsv_fIAsDvj322_5CPgDPgT9FAlQ,1927
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- cidc_api/models/db/stage2/trial_orm.py,sha256=JOA9dA8UXMkB04gBH3huepvSpTdn3DSJzKH-jyCJCRY,2773
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- cidc_api/models/files/__init__.py,sha256=8BMTnUSHzUbz0lBeEQY6NvApxDD3GMWMduoVMos2g4Y,213
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- cidc_api/models/files/details.py,sha256=sZkGM7iEV4-J6IDQCdiMV6KBDLbPxCOqUMaU3aY9rX8,65153
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- cidc_api/models/files/facets.py,sha256=rG99wUpHvWHkcRDxTcXz40502Er47l_5hKzP-ORvXGE,33621
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- cidc_api/models/pydantic/stage2/__init__.py,sha256=OQRG5wFkNsyAU_0KI1W5PDn8pBDe1EJDcgKZ19shh_g,2331
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- cidc_api/models/pydantic/stage2/additional_treatment.py,sha256=HlsexyUh38hW9CTT3cxP6A9xeHa5JX8Cwvh5fi4MH9s,963
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- cidc_api/models/pydantic/stage2/administrative_person.py,sha256=KgILOkUra-AmqwFlj6XNappfMNi4KuhZ98So1R8p-eY,1528
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- cidc_api/models/pydantic/stage2/administrative_role_assignment.py,sha256=qsdrBJgDA4GWY-1VAFgbgQWfqSjJZ-OFsIOZDT9CyAE,512
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- cidc_api/models/pydantic/stage2/adverse_event.py,sha256=7fGeczRqw2sFK-QMWWIJFhgtYROMkf5w4jTfmAh0_cg,3856
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