nci-cidc-api-modules 1.2.19__py3-none-any.whl → 1.2.20__py3-none-any.whl

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Files changed (8) hide show
  1. cidc_api/models/files/facets.py +5 -0
  2. cidc_api/models/types.py +1 -0
  3. cidc_api/shared/utils.py +4 -1
  4. {nci_cidc_api_modules-1.2.19.dist-info → nci_cidc_api_modules-1.2.20.dist-info}/METADATA +2 -2
  5. {nci_cidc_api_modules-1.2.19.dist-info → nci_cidc_api_modules-1.2.20.dist-info}/RECORD +8 -8
  6. {nci_cidc_api_modules-1.2.19.dist-info → nci_cidc_api_modules-1.2.20.dist-info}/WHEEL +0 -0
  7. {nci_cidc_api_modules-1.2.19.dist-info → nci_cidc_api_modules-1.2.20.dist-info}/licenses/LICENSE +0 -0
  8. {nci_cidc_api_modules-1.2.19.dist-info → nci_cidc_api_modules-1.2.20.dist-info}/top_level.txt +0 -0
cidc_api/models/files/facets.py CHANGED
@@ -439,6 +439,11 @@ assay_facets: Facets = {
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  "Analysis files for all samples run on the Olink platform in the trial.",
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  ),
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  },
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+ "Olink HT": {
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+ "Batch-Level Combined File": FacetConfig(["/olink_ht/batch_level_combined_file.xlsx"]),
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+ "Study-Level Combined File": FacetConfig(["/olink_ht/study_level_combined_file.xlsx"]),
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+ "Npx Run File": FacetConfig(["/olink_ht/npx_run_file.xlsx"]),
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+ },
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  "IHC": {
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  "Images": FacetConfig(["/ihc/ihc_image."]),
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  "Combined Markers": FacetConfig(["csv|ihc marker combined"]),
cidc_api/models/types.py CHANGED
@@ -84,6 +84,7 @@ AssayType = Literal[
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  "scRNAseq",
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  "snRNA-Seq",
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  "Visium",
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+ "Olink HT",
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  ]
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cidc_api/shared/utils.py CHANGED
@@ -5,4 +5,7 @@ def strip_whitespaces(df):
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  else:
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  return x
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- return df.map(stripper)
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+ df.rename(columns=stripper, inplace=True)
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+ df = df.map(stripper)
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+
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+ return df
{nci_cidc_api_modules-1.2.19.dist-info → nci_cidc_api_modules-1.2.20.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: nci_cidc_api_modules
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- Version: 1.2.19
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+ Version: 1.2.20
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  Summary: SQLAlchemy data models and configuration tools used in the NCI CIDC API
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  Home-page: https://github.com/NCI-CIDC/cidc-api-gae
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  License: MIT license
@@ -30,7 +30,7 @@ Requires-Dist: requests>=2.32.5
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  Requires-Dist: sqlalchemy>=2.0.44
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  Requires-Dist: sqlalchemy-mixins~=2.0.5
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  Requires-Dist: werkzeug>=3.1.3
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- Requires-Dist: nci-cidc-schemas==0.28.8
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+ Requires-Dist: nci-cidc-schemas==0.28.9
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  Dynamic: description
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  Dynamic: description-content-type
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  Dynamic: home-page
{nci_cidc_api_modules-1.2.19.dist-info → nci_cidc_api_modules-1.2.20.dist-info}/RECORD RENAMED
@@ -8,10 +8,10 @@ cidc_api/models/data.py,sha256=evv9JJcW3U_g-74MgKdxtB_gGJBTRQjtnsVKwa3DzFE,638
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  cidc_api/models/migrations.py,sha256=UlS5How3J4ryaRuZT6F5VQtAKikkl0LTv9MgMO_ltiQ,11161
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  cidc_api/models/models.py,sha256=2ENATE2dbl93uaKSqveqAVuhv1SvxOkcw4pWDTolng0,148484
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  cidc_api/models/schemas.py,sha256=6IE2dJoEMcMbi0Vr1V3cYKnPKU0hv9vRKBixOZHe88s,2766
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- cidc_api/models/types.py,sha256=eDQCd-lUClxpFa3QNN7SRmcIezoqPK8IbTa9atAChn0,29912
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+ cidc_api/models/types.py,sha256=9dInLZ6gN39zhEe3xhBXyz2xVMr11CeE1-GCOmT_OjY,29928
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  cidc_api/models/files/__init__.py,sha256=8BMTnUSHzUbz0lBeEQY6NvApxDD3GMWMduoVMos2g4Y,213
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  cidc_api/models/files/details.py,sha256=sZkGM7iEV4-J6IDQCdiMV6KBDLbPxCOqUMaU3aY9rX8,65153
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- cidc_api/models/files/facets.py,sha256=RZoe0FadRGJw8_-jzJQkc4dIVSuaYlunNrsopb2dYho,33325
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+ cidc_api/models/files/facets.py,sha256=BGx6FeQkK-ujCs-0Y8dUlba8uOmXgAqdY5u1EQqOnFM,33612
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  cidc_api/shared/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  cidc_api/shared/auth.py,sha256=PHqmVGkqDjbmUofytVFwD_9ssgUomESl3fFtFHPwZYQ,9062
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  cidc_api/shared/email_layout.html,sha256=pBoTNw3ACHH-ncZFaNvcy5bXMqPwizR78usb0uCYtIc,7670
@@ -20,9 +20,9 @@ cidc_api/shared/file_handling.py,sha256=UP3KZ61Km5RNmNfk126_upKv-jGkDzpc5Pvk1s7c
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  cidc_api/shared/gcloud_client.py,sha256=ovXGS2ynaBgB_23prj23H10GNN4fectiVF7Hj4LJXQk,37302
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  cidc_api/shared/jose.py,sha256=-qzGzEDAlokEp9E7WtBtQkXyyfPWTYXlwYpCqVJWmqM,1830
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  cidc_api/shared/rest_utils.py,sha256=RwR30WOUAYCxL7V-i2totEyeriG30GbBDvBcpLXhM9w,6594
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- cidc_api/shared/utils.py,sha256=oDGC8MHxEf7MDuzWynZuE66OfNUnRZE8z7Yn2Q9kYO8,178
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- nci_cidc_api_modules-1.2.19.dist-info/licenses/LICENSE,sha256=pNYWVTHaYonnmJyplmeAp7tQAjosmDpAWjb34jjv7Xs,1102
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- nci_cidc_api_modules-1.2.19.dist-info/METADATA,sha256=6bVrQ0WH8icbydssbIQFk5FMCoHfZXP-eGEDgfeyURo,39691
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- nci_cidc_api_modules-1.2.19.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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- nci_cidc_api_modules-1.2.19.dist-info/top_level.txt,sha256=rNiRzL0lJGi5Q9tY9uSoMdTbJ-7u5c_D2E86KA94yRA,9
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- nci_cidc_api_modules-1.2.19.dist-info/RECORD,,
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+ cidc_api/shared/utils.py,sha256=FdZJiynmh6BIzWyCTcUAcUMKCAtzEyp_HLdXEticNcI,237
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+ nci_cidc_api_modules-1.2.20.dist-info/licenses/LICENSE,sha256=pNYWVTHaYonnmJyplmeAp7tQAjosmDpAWjb34jjv7Xs,1102
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+ nci_cidc_api_modules-1.2.20.dist-info/METADATA,sha256=Hwm9zDw1u4x_zfWr2hWV8D0WKQZBtRZ-7e0ifVXBt-o,39691
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+ nci_cidc_api_modules-1.2.20.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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+ nci_cidc_api_modules-1.2.20.dist-info/top_level.txt,sha256=rNiRzL0lJGi5Q9tY9uSoMdTbJ-7u5c_D2E86KA94yRA,9
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+ nci_cidc_api_modules-1.2.20.dist-info/RECORD,,