nci-cidc-api-modules 1.2.18__py3-none-any.whl → 1.2.20__py3-none-any.whl

cidc_api/shared/utils.py

@@ -5,4 +5,7 @@ def strip_whitespaces(df):
         else:
             return x
 
-    return df.map(stripper)
+    df.rename(columns=stripper, inplace=True)
+    df = df.map(stripper)
+
+    return df

{nci_cidc_api_modules-1.2.18.dist-info → nci_cidc_api_modules-1.2.20.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: nci_cidc_api_modules
-Version: 1.2.18
+Version: 1.2.20
 Summary: SQLAlchemy data models and configuration tools used in the NCI CIDC API
 Home-page: https://github.com/NCI-CIDC/cidc-api-gae
 License: MIT license
@@ -28,8 +28,9 @@ Requires-Dist: pyarrow>=22.0.0
 Requires-Dist: python-dotenv>=1.2.1
 Requires-Dist: requests>=2.32.5
 Requires-Dist: sqlalchemy>=2.0.44
+Requires-Dist: sqlalchemy-mixins~=2.0.5
 Requires-Dist: werkzeug>=3.1.3
-Requires-Dist: nci-cidc-schemas==0.28.8
+Requires-Dist: nci-cidc-schemas==0.28.9
 Dynamic: description
 Dynamic: description-content-type
 Dynamic: home-page
@@ -217,13 +218,14 @@ gcloud auth application-default login
 In your .env file, comment out `POSTGRES_URI` and uncommment
 `CLOUD_SQL_INSTANCE_NAME CLOUD_SQL_DB_USER CLOUD_SQL_DB_NAME` Replace `CLOUD_SQL_DB_USER` with your NIH email.
 
-### Running database migrations
+### Creating/Running database migrations
 
 This project uses [`Flask Migrate`](https://flask-migrate.readthedocs.io/en/latest/) for managing database migrations. To create a new migration and upgrade the database specified in your `.env` config:
 
 ```bash
 export FLASK_APP=cidc_api/app.py
-# Generate the migration script
+# First, make your changes to the model(s)
+# Then, let flask automatically generate the db change. Double check the migration script!
 flask db migrate -m "<a message describing the changes in this migration>"
 # Apply changes to the database
 flask db upgrade

{nci_cidc_api_modules-1.2.18.dist-info → nci_cidc_api_modules-1.2.20.dist-info}/RECORD

@@ -3,13 +3,15 @@ cidc_api/config/db.py,sha256=CRgpyw7uVP9v7CTAa7_1dcXURqrfjRcLNjGgZC7iPQE,1627
 cidc_api/config/logging.py,sha256=abhVYtn8lfhIt0tyV2WHFgSmp_s2eeJh7kodB6LH4J0,1149
 cidc_api/config/secrets.py,sha256=jRFj7W43pWuPf9DZQLCKF7WPXf5cUv-BAaS3ASqhV_Q,1481
 cidc_api/config/settings.py,sha256=ttOGvk_6zVMn4dtxIZ2-0w3wF2fpAUVfGpVZbKJ2b6s,4653
-cidc_api/models/__init__.py,sha256=bl445G8Zic9YbhZ8ZBni07wtBMhLJRMBA-JqjLxx2bw,66
-cidc_api/models/migrations.py,sha256=gp9vtkYbA9FFy2s-7woelAmsvQbJ41LO2_DY-YkFIrQ,11464
-cidc_api/models/models.py,sha256=_D8kJeBGQkoiko0y4EH3dM4xnfOb7xBVY6ZFEgu4KOU,148034
+cidc_api/models/__init__.py,sha256=cTyK0Z1ttLo9itwZVRFr-d6aX-zX633YhqipqPgoGfE,115
+cidc_api/models/data.py,sha256=evv9JJcW3U_g-74MgKdxtB_gGJBTRQjtnsVKwa3DzFE,638
+cidc_api/models/migrations.py,sha256=UlS5How3J4ryaRuZT6F5VQtAKikkl0LTv9MgMO_ltiQ,11161
+cidc_api/models/models.py,sha256=2ENATE2dbl93uaKSqveqAVuhv1SvxOkcw4pWDTolng0,148484
 cidc_api/models/schemas.py,sha256=6IE2dJoEMcMbi0Vr1V3cYKnPKU0hv9vRKBixOZHe88s,2766
+cidc_api/models/types.py,sha256=9dInLZ6gN39zhEe3xhBXyz2xVMr11CeE1-GCOmT_OjY,29928
 cidc_api/models/files/__init__.py,sha256=8BMTnUSHzUbz0lBeEQY6NvApxDD3GMWMduoVMos2g4Y,213
 cidc_api/models/files/details.py,sha256=sZkGM7iEV4-J6IDQCdiMV6KBDLbPxCOqUMaU3aY9rX8,65153
-cidc_api/models/files/facets.py,sha256=RZoe0FadRGJw8_-jzJQkc4dIVSuaYlunNrsopb2dYho,33325
+cidc_api/models/files/facets.py,sha256=BGx6FeQkK-ujCs-0Y8dUlba8uOmXgAqdY5u1EQqOnFM,33612
 cidc_api/shared/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cidc_api/shared/auth.py,sha256=PHqmVGkqDjbmUofytVFwD_9ssgUomESl3fFtFHPwZYQ,9062
 cidc_api/shared/email_layout.html,sha256=pBoTNw3ACHH-ncZFaNvcy5bXMqPwizR78usb0uCYtIc,7670
@@ -18,9 +20,9 @@ cidc_api/shared/file_handling.py,sha256=UP3KZ61Km5RNmNfk126_upKv-jGkDzpc5Pvk1s7c
 cidc_api/shared/gcloud_client.py,sha256=ovXGS2ynaBgB_23prj23H10GNN4fectiVF7Hj4LJXQk,37302
 cidc_api/shared/jose.py,sha256=-qzGzEDAlokEp9E7WtBtQkXyyfPWTYXlwYpCqVJWmqM,1830
 cidc_api/shared/rest_utils.py,sha256=RwR30WOUAYCxL7V-i2totEyeriG30GbBDvBcpLXhM9w,6594
-cidc_api/shared/utils.py,sha256=oDGC8MHxEf7MDuzWynZuE66OfNUnRZE8z7Yn2Q9kYO8,178
-nci_cidc_api_modules-1.2.18.dist-info/licenses/LICENSE,sha256=pNYWVTHaYonnmJyplmeAp7tQAjosmDpAWjb34jjv7Xs,1102
-nci_cidc_api_modules-1.2.18.dist-info/METADATA,sha256=_vBchGh4tClTOJTEl-cE9DeJqcl_qZkxOcsa-LU-R2w,39540
-nci_cidc_api_modules-1.2.18.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-nci_cidc_api_modules-1.2.18.dist-info/top_level.txt,sha256=rNiRzL0lJGi5Q9tY9uSoMdTbJ-7u5c_D2E86KA94yRA,9
-nci_cidc_api_modules-1.2.18.dist-info/RECORD,,
+cidc_api/shared/utils.py,sha256=FdZJiynmh6BIzWyCTcUAcUMKCAtzEyp_HLdXEticNcI,237
+nci_cidc_api_modules-1.2.20.dist-info/licenses/LICENSE,sha256=pNYWVTHaYonnmJyplmeAp7tQAjosmDpAWjb34jjv7Xs,1102
+nci_cidc_api_modules-1.2.20.dist-info/METADATA,sha256=Hwm9zDw1u4x_zfWr2hWV8D0WKQZBtRZ-7e0ifVXBt-o,39691
+nci_cidc_api_modules-1.2.20.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+nci_cidc_api_modules-1.2.20.dist-info/top_level.txt,sha256=rNiRzL0lJGi5Q9tY9uSoMdTbJ-7u5c_D2E86KA94yRA,9
+nci_cidc_api_modules-1.2.20.dist-info/RECORD,,