nci-cidc-api-modules 1.1.5__py3-none-any.whl → 1.1.7__py3-none-any.whl

cidc_api/models/csms_api.py

@@ -292,12 +292,6 @@ def _process_csms_sample(csms_sample: dict):
             csms_sample["sample_derivative_concentration"]
         )
 
-    # "Not Reported" as default when required
-    if (
-        csms_sample["type_of_sample"] == "Blood"
-        and "type_of_primary_container" not in csms_sample
-    ):
-        csms_sample["type_of_primary_container"] = "Not Reported"
     if "parent_sample_id" not in csms_sample:
         csms_sample["parent_sample_id"] = "Not Reported"
 

cidc_api/shared/emails.py

@@ -115,19 +115,6 @@ def new_upload_alert(upload, full_metadata) -> dict:
         "html_content": html_content,
     }
 
-    if pipeline_configs:
-        email["attachments"] = [
-            {
-                # converting to base64 email attachment format (en/decode due to b64 expecting bytes)
-                "content": base64.b64encode(
-                    conf.encode() if isinstance(conf, str) else conf
-                ).decode(),
-                "type": "application/yaml",
-                "filename": conf_name,
-            }
-            for conf_name, conf in pipeline_configs.items()
-        ]
-
     return email
 
 

{nci_cidc_api_modules-1.1.5.dist-info → nci_cidc_api_modules-1.1.7.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: nci_cidc_api_modules
-Version: 1.1.5
+Version: 1.1.7
 Summary: SQLAlchemy data models and configuration tools used in the NCI CIDC API
 Home-page: https://github.com/NCI-CIDC/cidc-api-gae
 License: MIT license
@@ -28,7 +28,7 @@ Requires-Dist: python-dotenv==0.10.3
 Requires-Dist: requests==2.32.3
 Requires-Dist: jinja2==3.1.5
 Requires-Dist: certifi==2024.7.4
-Requires-Dist: nci-cidc-schemas==0.27.04
+Requires-Dist: nci-cidc-schemas==0.27.05
 Dynamic: description
 Dynamic: description-content-type
 Dynamic: home-page

{nci_cidc_api_modules-1.1.5.dist-info → nci_cidc_api_modules-1.1.7.dist-info}/RECORD

@@ -6,7 +6,7 @@ cidc_api/config/settings.py,sha256=2VHOVWdN4yUCNYMob2gaWgH2-1_4sbuo46JEIVT_PCY,4
 cidc_api/csms/__init__.py,sha256=eJkY6rWNOAUBmSd4G1_U6h7i472druKEtBdVmgFZVPg,20
 cidc_api/csms/auth.py,sha256=25Yma2Kz3KLENAPSeBYacFuSZXng-EDgmgInKBsRyP0,3191
 cidc_api/models/__init__.py,sha256=bl445G8Zic9YbhZ8ZBni07wtBMhLJRMBA-JqjLxx2bw,66
-cidc_api/models/csms_api.py,sha256=hw5ahcXZgE6huP18S0y0Hjin5rCSefMIUNYPOh1x5n8,31613
+cidc_api/models/csms_api.py,sha256=_uB9ZoxCFxKO8ZDTxCjS0CpeQg14EdlkEqnwyAFyYFQ,31377
 cidc_api/models/migrations.py,sha256=gp9vtkYbA9FFy2s-7woelAmsvQbJ41LO2_DY-YkFIrQ,11464
 cidc_api/models/models.py,sha256=kszT6ApBOIDsRJRHiYQvWo8283Jox_x0nPuetXBeK74,126680
 cidc_api/models/schemas.py,sha256=7tDYtmULuzTt2kg7RorWhte06ffalgpQKrFiDRGcPEQ,2711
@@ -15,12 +15,12 @@ cidc_api/models/files/details.py,sha256=h6R0p_hi-ukHsO7HV-3Wukccp0zRLJ1Oie_JNA_7
 cidc_api/models/files/facets.py,sha256=0owlp-is2QJ7DemcsJ4VdlnN255NkkV1Cimg0VaXHpY,28967
 cidc_api/shared/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cidc_api/shared/auth.py,sha256=EzMpYAR_gN5x985hgFAXTd24xygyctqZ80Yp05Ph_HQ,9104
-cidc_api/shared/emails.py,sha256=TXKrga3A8rvaUKIH68ASmjkg9qMdFCWDf5HHxPvro5M,4892
+cidc_api/shared/emails.py,sha256=FXW9UfI2bCus350SQuL7ZQYq1Vg-vGXaGWmRfA6z2nM,4408
 cidc_api/shared/gcloud_client.py,sha256=7dDs0crLMJKdIp4IDSfrZBMB3h-zvWNieB81azoeLO4,33746
 cidc_api/shared/jose.py,sha256=QO30uIhbYDwzPEWWJXz0PfyV7E1AZHReEZJUVT70UJY,1844
 cidc_api/shared/rest_utils.py,sha256=LMfBpvJRjkfQjCzVXuhTTe4Foz4wlvaKg6QntyR-Hkc,6648
-nci_cidc_api_modules-1.1.5.dist-info/LICENSE,sha256=pNYWVTHaYonnmJyplmeAp7tQAjosmDpAWjb34jjv7Xs,1102
-nci_cidc_api_modules-1.1.5.dist-info/METADATA,sha256=uqkkK2Ks9VrPuvKv1ZqmV3nGE_Q2tNbWyQ3lquMf8Dw,40802
-nci_cidc_api_modules-1.1.5.dist-info/WHEEL,sha256=jB7zZ3N9hIM9adW7qlTAyycLYW9npaWKLRzaoVcLKcM,91
-nci_cidc_api_modules-1.1.5.dist-info/top_level.txt,sha256=rNiRzL0lJGi5Q9tY9uSoMdTbJ-7u5c_D2E86KA94yRA,9
-nci_cidc_api_modules-1.1.5.dist-info/RECORD,,
+nci_cidc_api_modules-1.1.7.dist-info/LICENSE,sha256=pNYWVTHaYonnmJyplmeAp7tQAjosmDpAWjb34jjv7Xs,1102
+nci_cidc_api_modules-1.1.7.dist-info/METADATA,sha256=Y2cWTvsc6TVU6UBgG06CIhqM7ZD0RQx_7hmj6ihkL_8,40802
+nci_cidc_api_modules-1.1.7.dist-info/WHEEL,sha256=52BFRY2Up02UkjOa29eZOS2VxUrpPORXg1pkohGGUS8,91
+nci_cidc_api_modules-1.1.7.dist-info/top_level.txt,sha256=rNiRzL0lJGi5Q9tY9uSoMdTbJ-7u5c_D2E86KA94yRA,9
+nci_cidc_api_modules-1.1.7.dist-info/RECORD,,

{nci_cidc_api_modules-1.1.5.dist-info → nci_cidc_api_modules-1.1.7.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (75.8.2)
+Generator: setuptools (76.0.0)
 Root-Is-Purelib: true
 Tag: py3-none-any