nci-cidc-api-modules 1.1.19__py3-none-any.whl → 1.1.21__py3-none-any.whl

cidc_api/models/files/details.py

@@ -957,4 +957,40 @@ details_dict = {
         "H and E file from MIBI analysis",
         "",
     ),
+    # mihc
+    "/mihc/sample_report.csv": FileDetails(
+        "source",
+        "",
+        "",
+    ),
+    "/mihc/multitiffs.tar.gz": FileDetails(
+        "source",
+        "",
+        "",
+    ),
+    "/mihc/tilemap.ome.tiff": FileDetails(
+        "source",
+        "",
+        "",
+    ),
+    "/mihc/tilestats.csv": FileDetails(
+        "source",
+        "",
+        "",
+    ),
+    "/mihc/geo_jsons.zip": FileDetails(
+        "source",
+        "",
+        "",
+    ),
+    "/mihc/stains.zip": FileDetails(
+        "source",
+        "",
+        "",
+    ),
+    "/mihc/h5ad.h5ad": FileDetails(
+        "source",
+        "",
+        "",
+    ),
 }

cidc_api/models/files/facets.py

@@ -346,6 +346,15 @@ assay_facets: Facets = {
             "H and E file from MIBI analysis",
         ),
     },
+    "mIHC": {
+        "Samples Report": FacetConfig(["/mihc/sample_report.csv"], "Samples report for mIHC run"),
+        "Multitiffs": FacetConfig(["/mihc/multitiffs.tar.gz"], "Multi Tiffs file from mIHC run"),
+        "Tile Map": FacetConfig(["/mihc/tilemap.ome.tiff"], "Tile map file from mIHC run"),
+        "Tile Stats": FacetConfig(["/mihc/tilestats.csv"], "Tile stats file from mIHC run"),
+        "GeoJsons Zip": FacetConfig(["/mihc/geo_jsons.zip"], "Zip of all geo jsons from mIHC run"),
+        "Stains Zip": FacetConfig(["/mihc/stains.zip"], "Zip of all svs stain files from mIHC run"),
+        "H5ad File": FacetConfig(["/mihc/h5ad.h5ad"], "H5ad file from mIHC run"),
+    },
     "mIF": {
         "Source Images": FacetConfig(
             [

cidc_api/models/models.py

@@ -2518,6 +2518,14 @@ class DownloadableFiles(CommonColumns):
 
         return clause
 
+    @classmethod
+    @with_default_session
+    def list_ids(cls, session: Session, filter_: Callable[[Query], Query]):
+        """List record ids in the downloadable_files table based on filter_."""
+        query = session.query(cls.id)
+        query = filter_(query)
+        return [r[0] for r in query.all()]
+
     @classmethod
     @with_default_session
     def list_with_permissions(

{nci_cidc_api_modules-1.1.19.dist-info → nci_cidc_api_modules-1.1.21.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: nci_cidc_api_modules
-Version: 1.1.19
+Version: 1.1.21
 Summary: SQLAlchemy data models and configuration tools used in the NCI CIDC API
 Home-page: https://github.com/NCI-CIDC/cidc-api-gae
 License: MIT license
@@ -28,7 +28,7 @@ Requires-Dist: python-dotenv==0.10.3
 Requires-Dist: requests==2.32.3
 Requires-Dist: jinja2==3.1.6
 Requires-Dist: certifi==2024.7.4
-Requires-Dist: nci-cidc-schemas==0.27.12
+Requires-Dist: nci-cidc-schemas==0.27.14
 Dynamic: description
 Dynamic: description-content-type
 Dynamic: home-page
@@ -71,7 +71,7 @@ source venv/bin/activate
 # alias activate='source venv/bin/activate'
 ```
 
-Install both the production and development dependencies.
+Install both the production and development dependencies. 
 
 ```bash
 pip install -r requirements.dev.txt

{nci_cidc_api_modules-1.1.19.dist-info → nci_cidc_api_modules-1.1.21.dist-info}/RECORD

@@ -8,19 +8,19 @@ cidc_api/csms/auth.py,sha256=VTfHlCym_hqVrHXv41Ku9RMAGN9BiNe7ui0o9KZCKtY,3185
 cidc_api/models/__init__.py,sha256=bl445G8Zic9YbhZ8ZBni07wtBMhLJRMBA-JqjLxx2bw,66
 cidc_api/models/csms_api.py,sha256=ovi_jZXZBg6XYEvIupbf5c0WyMbPi4V07OywbleKGqs,30737
 cidc_api/models/migrations.py,sha256=gp9vtkYbA9FFy2s-7woelAmsvQbJ41LO2_DY-YkFIrQ,11464
-cidc_api/models/models.py,sha256=tKLyBrVH_7fL2smGzApypBTyL-nuuXQHxI-TJsUAIMg,129200
+cidc_api/models/models.py,sha256=mQ6XTnGwh-h8wi7xcwEuzMZUr8epv9C8f5lkjkIjsVc,129512
 cidc_api/models/schemas.py,sha256=7tDYtmULuzTt2kg7RorWhte06ffalgpQKrFiDRGcPEQ,2711
 cidc_api/models/files/__init__.py,sha256=8BMTnUSHzUbz0lBeEQY6NvApxDD3GMWMduoVMos2g4Y,213
-cidc_api/models/files/details.py,sha256=v4v_BetAOBiEq-FVcxho8lamZCRGb48oAvKk9yq4ZOI,62204
-cidc_api/models/files/facets.py,sha256=803siMWziH5UVaF2tj49a_kJYb6CmSWHsGQJweXwyJY,28705
+cidc_api/models/files/details.py,sha256=WrWPxJqlsteinoNbGTaQ3fcxgvChqLGJ9vY7H829jtk,62842
+cidc_api/models/files/facets.py,sha256=JqCmwcjYYSz7XK4bAokSE9i71C8t9EQ4Jtbv7npth7M,29391
 cidc_api/shared/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cidc_api/shared/auth.py,sha256=PHqmVGkqDjbmUofytVFwD_9ssgUomESl3fFtFHPwZYQ,9062
 cidc_api/shared/emails.py,sha256=GY-l0EkoVU_3hjV0g-xo7N9d1iyCdluyq_arftEPPe0,4989
 cidc_api/shared/gcloud_client.py,sha256=spgH0fapO713X82eV23uLXtq4aVWJHwEDK-XDxaehJc,33088
 cidc_api/shared/jose.py,sha256=-qzGzEDAlokEp9E7WtBtQkXyyfPWTYXlwYpCqVJWmqM,1830
 cidc_api/shared/rest_utils.py,sha256=RwR30WOUAYCxL7V-i2totEyeriG30GbBDvBcpLXhM9w,6594
-nci_cidc_api_modules-1.1.19.dist-info/licenses/LICENSE,sha256=pNYWVTHaYonnmJyplmeAp7tQAjosmDpAWjb34jjv7Xs,1102
-nci_cidc_api_modules-1.1.19.dist-info/METADATA,sha256=TCF0r39TG5P0BCGWVm1odIa6cNVAB1AdkJ4gfOybcNY,41284
-nci_cidc_api_modules-1.1.19.dist-info/WHEEL,sha256=wXxTzcEDnjrTwFYjLPcsW_7_XihufBwmpiBeiXNBGEA,91
-nci_cidc_api_modules-1.1.19.dist-info/top_level.txt,sha256=rNiRzL0lJGi5Q9tY9uSoMdTbJ-7u5c_D2E86KA94yRA,9
-nci_cidc_api_modules-1.1.19.dist-info/RECORD,,
+nci_cidc_api_modules-1.1.21.dist-info/licenses/LICENSE,sha256=pNYWVTHaYonnmJyplmeAp7tQAjosmDpAWjb34jjv7Xs,1102
+nci_cidc_api_modules-1.1.21.dist-info/METADATA,sha256=dLozk9tHS5_MQV5SdEa9xTCGJsrxLnN1ao97Of1hOss,41285
+nci_cidc_api_modules-1.1.21.dist-info/WHEEL,sha256=DnLRTWE75wApRYVsjgc6wsVswC54sMSJhAEd4xhDpBk,91
+nci_cidc_api_modules-1.1.21.dist-info/top_level.txt,sha256=rNiRzL0lJGi5Q9tY9uSoMdTbJ-7u5c_D2E86KA94yRA,9
+nci_cidc_api_modules-1.1.21.dist-info/RECORD,,

{nci_cidc_api_modules-1.1.19.dist-info → nci_cidc_api_modules-1.1.21.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (80.1.0)
+Generator: setuptools (80.4.0)
 Root-Is-Purelib: true
 Tag: py3-none-any