natural-pdf 0.1.2__py3-none-any.whl → 0.1.3__py3-none-any.whl

natural_pdf/search/haystack_search_service.py

@@ -0,0 +1,520 @@
+"""Implementation of the SearchServiceProtocol using Haystack components."""
+
+import logging
+import os
+from typing import List, Dict, Any, Optional, Union, Iterable
+from pathlib import Path
+from PIL import Image
+import copy
+
+# --- Haystack Imports ---
+try:
+    import haystack
+    from haystack import Pipeline
+    from haystack.dataclasses import Document as HaystackDocument
+    from haystack.document_stores.types import DocumentStore, DuplicatePolicy
+    from haystack_integrations.document_stores.chroma import ChromaDocumentStore
+    from haystack.document_stores.in_memory import InMemoryDocumentStore
+    from haystack.components.embedders import (
+        SentenceTransformersTextEmbedder,
+        SentenceTransformersDocumentEmbedder
+    )
+    # Import necessary retrievers, rankers etc. as needed for search()
+    from haystack.components.retrievers.in_memory import InMemoryEmbeddingRetriever # For InMem
+    from haystack_integrations.components.retrievers.chroma import ChromaEmbeddingRetriever # Use embedding retriever
+    # Need Ranker if used
+    try:
+        from haystack.components.rankers import CohereRanker
+    except ImportError:
+        CohereRanker = None
+
+    # Don't define here, it's imported later
+except ImportError:
+    # Set flags/placeholders if Haystack isn't installed
+    # Don't define here, it's imported later
+    DocumentStore = object
+    HaystackDocument = Dict
+    ChromaDocumentStore = None
+    InMemoryDocumentStore = None
+    SentenceTransformersDocumentEmbedder = None
+    SentenceTransformersTextEmbedder = None
+    InMemoryEmbeddingRetriever = None
+    ChromaEmbeddingRetriever = None # Fallback definition
+    CohereRanker = None
+    Pipeline = None
+    DuplicatePolicy = None
+
+# --- ChromaDB Client Import (for management) ---
+try:
+    import chromadb
+    CHROMADB_AVAILABLE = True
+except ImportError:
+    chromadb = None
+    CHROMADB_AVAILABLE = False
+
+# --- Local Imports ---
+from .search_service_protocol import SearchServiceProtocol, IndexConfigurationError, IndexExistsError
+from .search_options import SearchOptions, TextSearchOptions, MultiModalSearchOptions, BaseSearchOptions
+from .search_service_protocol import Indexable
+from .haystack_utils import HAS_HAYSTACK_EXTRAS # <-- This is the canonical import
+
+# --- Logging ---
+logger = logging.getLogger(__name__)
+
+# --- Default Configuration Values ---
+DEFAULT_PERSIST_PATH = "./natural_pdf_index"
+DEFAULT_EMBEDDING_MODEL = "sentence-transformers/all-MiniLM-L6-v2"
+
+class HaystackSearchService(SearchServiceProtocol):
+    """
+    Haystack-based implementation of the search service protocol.
+
+    Manages ChromaDB (persistent) or InMemory (non-persistent) DocumentStores
+    and uses Haystack components for embedding and retrieval.
+    A single instance of this service is tied to a specific collection name.
+    """
+
+    def __init__(
+        self,
+        collection_name: str,
+        persist: bool = False, # Store type configuration
+        default_persist_path: str = DEFAULT_PERSIST_PATH,
+        embedding_model: str = DEFAULT_EMBEDDING_MODEL # Renamed for clarity
+    ):
+        """
+        Initialize the service for a specific collection.
+
+        Args:
+            collection_name: The name of the index/collection this service instance manages.
+            persist: If True, this service instance manages persistent ChromaDB stores.
+                    If False, it manages transient InMemory stores.
+            default_persist_path: Default path for persistent ChromaDB storage.
+            embedding_model: The embedding model this service instance will use.
+        """
+        if not HAS_HAYSTACK_EXTRAS:
+            raise ImportError("HaystackSearchService requires Haystack extras. Install with: pip install natural-pdf[haystack]")
+
+        self.collection_name = collection_name # Store the collection name
+        self._persist = persist # Store the persistence type for this instance
+        self._default_persist_path = default_persist_path
+        self._embedding_model = embedding_model # Store the configured model
+        
+        # Dictionary to hold InMemoryDocumentStore instances if not persisting
+        self._in_memory_store: Optional[InMemoryDocumentStore] = None if persist else InMemoryDocumentStore()
+        self._chroma_store: Optional[ChromaDocumentStore] = None # Lazy load
+
+        logger.info(f"HaystackSearchService initialized for collection='{self.collection_name}' (persist={self._persist}, model='{self._embedding_model}'). Default path: '{self._default_persist_path}'")
+
+    # --- Internal Helper Methods --- #
+
+    def _get_store(
+        self,
+    ) -> DocumentStore:
+        """Gets or creates the appropriate Haystack DocumentStore instance for this service's collection."""
+        # Use the instance's configured persistence type and collection name
+        if self._persist:
+            if self._chroma_store is None:
+                 # Lazy load Chroma store
+                 logger.debug(f"Initializing ChromaDocumentStore for collection '{self.collection_name}'.")
+                 self._chroma_store = ChromaDocumentStore(
+                     persist_path=self._default_persist_path,
+                     collection_name=self.collection_name # Use instance name
+                 )
+            return self._chroma_store
+        else:
+            # Return the instance's InMemory store
+            if self._in_memory_store is None: # Should have been created in __init__ if persist=False
+                 logger.warning(f"In-memory store for collection '{self.collection_name}' was not initialized. Creating now.")
+                 self._in_memory_store = InMemoryDocumentStore()
+            return self._in_memory_store
+
+    def _get_document_embedder(
+        self,
+        device: Optional[str] = None
+    ) -> SentenceTransformersDocumentEmbedder:
+        """Creates the Haystack document embedder component."""
+        model_name = self._embedding_model # Use instance model
+        logger.debug(f"Creating SentenceTransformersDocumentEmbedder. Model: {model_name}, Device: {device or 'auto'}")
+        if not SentenceTransformersDocumentEmbedder:
+            raise ImportError("SentenceTransformersDocumentEmbedder is required but not available.")
+        try:
+            embedder = SentenceTransformersDocumentEmbedder(
+                model=model_name,
+                device=device,
+            )
+            embedder.warm_up()
+            logger.info(f"Created SentenceTransformersDocumentEmbedder. Model: {model_name}, Device: {getattr(embedder, 'device', 'unknown')}")
+            return embedder
+        except Exception as e:
+            logger.error(f"Failed to initialize SentenceTransformersDocumentEmbedder: {e}", exc_info=True)
+            raise RuntimeError(f"Failed to initialize SentenceTransformersDocumentEmbedder with model '{model_name}'.") from e
+
+    def _get_text_embedder(
+        self,
+        device: Optional[str] = None
+    ) -> SentenceTransformersTextEmbedder:
+        """Creates the Haystack text embedder component (for queries)."""
+        model_name = self._embedding_model # Use instance model
+        logger.debug(f"Creating SentenceTransformersTextEmbedder. Model: {model_name}, Device: {device or 'auto'}")
+        if not SentenceTransformersTextEmbedder:
+            raise ImportError("SentenceTransformersTextEmbedder is required but not available.")
+        try:
+            embedder = SentenceTransformersTextEmbedder(model=model_name, device=device)
+            embedder.warm_up() 
+            logger.info(f"Created SentenceTransformersTextEmbedder. Model: {model_name}, Device: {getattr(embedder, 'device', 'unknown')}")
+            return embedder
+        except Exception as e:
+            logger.error(f"Failed to initialize SentenceTransformersTextEmbedder: {e}", exc_info=True)
+            raise RuntimeError(f"Could not create SentenceTransformersTextEmbedder with model '{model_name}'") from e
+
+    def _delete_chroma_collection(self) -> bool:
+        """Internal helper to delete the ChromaDB collection managed by this service."""
+        if not CHROMADB_AVAILABLE:
+            logger.error("Cannot delete ChromaDB collection because 'chromadb' library is not installed.")
+            raise ImportError("'chromadb' library required for collection deletion.")
+        if not self._persist:
+             logger.warning("Attempted to delete ChromaDB collection for a non-persistent service instance. Ignoring.")
+             return False # Cannot delete if not persistent
+        try:
+            collection_name_to_delete = self.collection_name # Use instance collection name
+            logger.warning(f"Attempting to delete existing ChromaDB collection '{collection_name_to_delete}' at path '{self._default_persist_path}'.")
+            chroma_client = chromadb.PersistentClient(path=self._default_persist_path)
+            try:
+                chroma_client.delete_collection(name=collection_name_to_delete)
+                logger.info(f"Successfully deleted existing ChromaDB collection '{collection_name_to_delete}'.")
+                self._chroma_store = None # Reset lazy-loaded store
+                return True
+            except chromadb.errors.InvalidCollectionException:
+                logger.info(f"ChromaDB collection '{collection_name_to_delete}' did not exist. No deletion needed.")
+                return True # Deletion is effectively successful
+            finally:
+                pass # Cleanup if needed
+        except ImportError as ie:
+            raise ie
+        except Exception as e:
+            logger.error(f"Error during ChromaDB collection deletion '{self.collection_name}': {e}", exc_info=True)
+            # Don't raise here, let index() decide based on force_reindex
+            return False
+
+    # --- Protocol Methods Implementation --- #
+
+    def index(
+        self,
+        documents: Iterable[Indexable], # Accept Indexable objects
+        embedder_device: Optional[str] = None,
+        force_reindex: bool = False,
+    ) -> None:
+        # Need to consume the iterable to log count, or log differently
+        # Let's convert to list for now, assuming size isn't prohibitive
+        indexable_list = list(documents)
+        logger.info(f"Index request for collection='{self.collection_name}', docs={len(indexable_list)}, model='{self._embedding_model}', force={force_reindex}, persist={self._persist}")
+        
+        if not indexable_list:
+             logger.warning("No documents provided for indexing. Skipping.")
+             return
+
+        # --- 1. Handle Reindexing (Deletion before store/embedder init) ---
+        if force_reindex:
+             logger.info(f"Force reindex requested for collection '{self.collection_name}'.")
+             if self._persist:
+                 # Attempt deletion, raises ImportError if chromadb missing
+                 deleted = self._delete_chroma_collection() # Uses self.collection_name
+                 if not deleted:
+                      # If deletion failed for other reasons, log and continue cautiously
+                      logger.warning("Collection deletion failed, but force_reindex=True. Proceeding with indexing, but existing data/config may interfere.")
+             else:
+                 # For InMemory, force_reindex means we want a fresh store instance.
+                 # Re-initialize the instance's in-memory store
+                 logger.info(f"force_reindex=True: Re-initializing InMemory store for collection '{self.collection_name}'.")
+                 self._in_memory_store = InMemoryDocumentStore() # Create a new one
+
+        # REMOVED try...except around store retrieval
+        # Let store initialization errors propagate directly
+        store = self._get_store() # No argument needed
+
+        # --- 3. Create Embedder ---
+        # Errors during embedder creation will propagate from the helper
+        embedder = self._get_document_embedder(embedder_device)
+
+        # --- 4. Convert Indexable to Haystack Docs & Embed ---
+        haystack_docs_to_embed: List[HaystackDocument] = []
+        logger.info(f"Preparing Haystack Documents from {len(indexable_list)} indexable items...")
+        # Consume Indexable items using the protocol methods
+        for item in indexable_list:
+            doc_id = item.get_id()
+            metadata = item.get_metadata()
+            content_obj = item.get_content() # This might be Page, Region, etc.
+
+            # Determine content based on embedder type and content object
+            # For now, assume text content is needed and try to extract it
+            content_text = ""
+            if isinstance(content_obj, str):
+                 # If get_content() already returned text
+                 content_text = content_obj
+            elif hasattr(content_obj, 'extract_text') and callable(getattr(content_obj, 'extract_text')):
+                 # If content object has extract_text (like Page or Region)
+                 try:
+                     content_text = content_obj.extract_text()
+                     if not isinstance(content_text, str):
+                         logger.warning(f"extract_text() on {type(content_obj)} did not return a string for doc '{doc_id}'. Using str().")
+                         content_text = str(content_obj)
+                 except Exception as extraction_error:
+                     logger.error(f"Error calling extract_text() on {type(content_obj)} for doc '{doc_id}': {extraction_error}. Using str().", exc_info=False)
+                     content_text = str(content_obj)
+            else:
+                 # Attempt to convert to string as fallback if no obvious text method
+                 logger.warning(f"Could not extract text from content type {type(content_obj)} obtained via get_content() for doc '{doc_id}'. Using str().")
+                 content_text = str(content_obj)
+
+            # Construct HaystackDocument using data from Indexable protocol methods
+            haystack_doc = HaystackDocument(
+                id=doc_id, # Use ID from get_id()
+                content=content_text,
+                meta=metadata # Use metadata from get_metadata()
+            )
+            haystack_docs_to_embed.append(haystack_doc)
+
+        if not haystack_docs_to_embed:
+             logger.warning("No Haystack documents were prepared. Check conversion logic and input data.")
+             return
+
+        logger.info(f"Embedding {len(haystack_docs_to_embed)} documents using '{self._embedding_model}'...")
+        try:
+            # Embed the documents
+            embedding_results = embedder.run(documents=haystack_docs_to_embed)
+            embedded_docs = embedding_results["documents"]
+            logger.info(f"Successfully embedded {len(embedded_docs)} documents.")
+
+        except haystack.errors.dimensionality_mismatch.InvalidDimensionError as dim_error:
+            # Keep specific catch for dimension mismatch - provides useful context
+            error_msg = f"Indexing failed for collection '{self.collection_name}'. Dimension mismatch: {dim_error}. "
+            error_msg += f"Ensure the embedding model ('{self._embedding_model}') matches the expected dimension of the store. "
+            if self._persist:
+                error_msg += f"If the collection already exists at '{self._default_persist_path}', it might have been created with a different model. "
+                error_msg += "Try deleting the persistent storage directory or using force_reindex=True."
+            else:
+                 error_msg += "This usually indicates an issue with the embedder setup or Haystack compatibility."
+            logger.error(error_msg, exc_info=True)
+            raise IndexConfigurationError(error_msg) from dim_error
+        # REMOVED broad except Exception for embedding errors. Let them propagate.
+
+        # --- 5. Write Embedded Documents to Store ---
+        logger.info(f"Writing {len(embedded_docs)} embedded documents to store '{self.collection_name}'...")
+        # REMOVED try...except around store writing. Let errors propagate.
+        write_result = store.write_documents(
+             documents=embedded_docs,
+             policy=DuplicatePolicy.OVERWRITE # Or configure as needed
+        )
+        logger.info(f"Successfully wrote {write_result} documents to store '{self.collection_name}'.")
+        # --- Add explicit count check after writing ---
+        logger.info(f"Store '{self.collection_name}' document count after write: {store.count_documents()}")
+        # --- End count check ---
+
+    def search(
+        self,
+        query: Any, # Changed from Union[str, Path, Image.Image] to Any
+        options: BaseSearchOptions,
+    ) -> List[Dict[str, Any]]:
+        logger.info(f"Search request for collection='{self.collection_name}', query_type={type(query).__name__}, options={options}")
+
+        store = self._get_store() # Let errors propagate
+
+        # --- 1. Handle Query Type and Embedding ---
+        # This implementation currently only supports text query embedding.
+        # TODO: Refactor or extend for multimodal queries based on service capabilities/options.
+        query_embedding = None
+        query_text = ""
+        if isinstance(query, (str, os.PathLike)):
+             if isinstance(query, os.PathLike):
+                 logger.warning("Image path query received, but multimodal search not fully implemented. Treating as text path string.")
+                 query_text = str(query)
+             else:
+                 query_text = query
+
+             text_embedder = self._get_text_embedder()
+             embedding_result = text_embedder.run(text=query_text)
+             query_embedding = embedding_result["embedding"]
+             if not query_embedding:
+                 raise ValueError("Text embedder did not return an embedding for the query.")
+             logger.debug(f"Successfully generated query text embedding (dim: {len(query_embedding)}).")
+
+        elif isinstance(query, Image.Image):
+             logger.error("Multimodal query (PIL Image) is not yet supported by this service implementation.")
+             raise NotImplementedError("Search with PIL Image queries is not implemented in HaystackSearchService.")
+        # Check if query is Indexable and try extracting text?
+        elif hasattr(query, 'extract_text') and callable(getattr(query, 'extract_text')):
+             logger.debug(f"Query type {type(query).__name__} has extract_text. Extracting text for search.")
+             try:
+                 query_text = query.extract_text()
+                 if not query_text or not query_text.strip():
+                     logger.warning(f"Query object {type(query).__name__} provided empty text. Returning no results.")
+                     return []
+                 # Embed the extracted text
+                 text_embedder = self._get_text_embedder()
+                 embedding_result = text_embedder.run(text=query_text)
+                 query_embedding = embedding_result["embedding"]
+                 if not query_embedding:
+                     raise ValueError(f"Text embedder did not return an embedding for text extracted from {type(query).__name__}.")
+                 logger.debug(f"Successfully generated query embedding from extracted text (dim: {len(query_embedding)}).")
+             except Exception as e:
+                 logger.error(f"Failed to extract or embed text from query object {type(query).__name__}: {e}", exc_info=True)
+                 raise RuntimeError("Query text extraction or embedding failed.") from e
+
+        else:
+             # Raise specific error for unsupported types by this implementation
+             raise TypeError(f"Unsupported query type for HaystackSearchService: {type(query)}")
+
+        # --- 2. Select Retriever based on Store Type ---
+        retriever = None
+        if isinstance(store, ChromaDocumentStore):
+            if not ChromaEmbeddingRetriever:
+                raise ImportError("ChromaEmbeddingRetriever is required but not available.")
+            retriever = ChromaEmbeddingRetriever(document_store=store)
+        elif isinstance(store, InMemoryDocumentStore):
+             retriever = InMemoryEmbeddingRetriever(document_store=store)
+        else:
+             # Raise specific error for unsupported store
+             raise TypeError(f"Cannot perform search with store type {type(store)}.")
+
+        # --- 3. Build Retrieval Pipeline ---
+        pipeline = Pipeline()
+        pipeline.add_component("retriever", retriever)
+        # Add Ranker logic (remains the same)
+        # ... (ranker setup if needed)
+
+        # --- 4. Prepare Filters (remains the same) ---
+        haystack_filters = options.filters
+        if haystack_filters:
+             logger.debug(f"Applying filters: {haystack_filters}")
+
+        # --- 5. Prepare Retriever Input Data (Dynamically) ---
+        retriever_input_data = {
+            "filters": haystack_filters,
+            "top_k": options.top_k
+        }
+        # Both InMemoryEmbeddingRetriever and ChromaEmbeddingRetriever expect 'query_embedding'
+        retriever_input_data["query_embedding"] = query_embedding
+        logger.debug(f"Providing 'query_embedding' to {type(retriever).__name__}.")
+
+        # --- 6. Run Retrieval ---
+        try:
+            logger.info(f"Running retrieval pipeline for collection '{self.collection_name}'...")
+            result = pipeline.run(
+                data={"retriever": retriever_input_data}
+                # ... (ranker data if needed)
+            )
+
+            # --- 7. Format Results ---
+            if "retriever" in result and "documents" in result["retriever"]:
+                retrieved_docs: List[HaystackDocument] = result["retriever"]["documents"]
+                logger.info(f"Retrieved {len(retrieved_docs)} documents.")
+                # Format results (remains the same)
+                final_results = []
+                for doc in retrieved_docs:
+                    # Include content_hash in returned metadata if present
+                    meta_with_hash = doc.meta
+                    # No need to explicitly add hash here if Haystack store preserves it
+                    result_dict = {
+                         "content_snippet": doc.content[:200] if doc.content else "",
+                         "score": doc.score if doc.score is not None else 0.0,
+                         "page_number": meta_with_hash.get("page_number", None),
+                         "pdf_path": meta_with_hash.get("pdf_path", None),
+                         "metadata": meta_with_hash, # Pass full metadata
+                         # "_haystack_document": doc # Optionally include full object
+                    }
+                    final_results.append(result_dict)
+                return final_results
+            else:
+                 logger.warning("Pipeline result did not contain expected retriever output.")
+                 return []
+
+        except FileNotFoundError:
+             # Keep specific catch for collection not found during retrieval
+             logger.error(f"Search failed: Collection '{self.collection_name}' not found at path '{self._default_persist_path}'.")
+             raise # Re-raise the specific FileNotFoundError
+        # REMOVED broad except Exception for pipeline execution. Let errors propagate.
+
+    def delete_index(
+        self,
+    ) -> bool:
+        """
+        Deletes the entire index/collection managed by this service instance.
+
+        Returns:
+            True if deletion was successful or collection didn't exist, False otherwise.
+        """
+        logger.warning(f"Request to delete index for collection '{self.collection_name}'.")
+        if self._persist:
+            # Delegate to internal ChromaDB deletion helper
+            return self._delete_chroma_collection()
+        else:
+            # For InMemory, "deleting" means re-initializing the store
+            logger.info(f"Re-initializing InMemory store for '{self.collection_name}' as deletion request.")
+            self._in_memory_store = InMemoryDocumentStore()
+            return True # Considered successful
+
+    def index_exists(
+        self,
+    ) -> bool:
+        """
+        Checks if the index/collection managed by this service instance exists.
+        NOTE: For ChromaDB, this may involve trying to connect.
+        For InMemory, it checks if the internal store object exists and has documents.
+        """
+        logger.debug(f"Checking existence of index for collection '{self.collection_name}'.")
+        store = self._get_store() # Get the store instance
+        try:
+            count = store.count_documents()
+            exists = count > 0
+            logger.debug(f"Store type {type(store).__name__} for '{self.collection_name}' exists and has {count} documents: {exists}")
+            return exists
+        except Exception as e:
+             # Catch errors during count_documents (e.g., connection error for persistent stores)
+             logger.warning(f"Could not count documents in store for collection '{self.collection_name}' to check existence: {e}", exc_info=False)
+             # Special handling for ChromaDB trying to connect to non-existent path? Check Haystack behavior.
+             # Assume not exists if count fails
+             return False
+
+    # --- Sync Methods Implementation ---
+
+    def list_documents(self, include_metadata: bool = False, **kwargs) -> List[Dict]:
+        """Retrieves documents, required for sync.
+           NOTE: Haystack's filter_documents is the closest match.
+                 Fetches all docs if filters=None.
+        """
+        logger.debug(f"Listing documents for collection '{self.collection_name}' (include_metadata={include_metadata})...")
+        store = self._get_store()
+        try:
+            # Use filter_documents with no filters to get all
+            # This might be inefficient for very large stores.
+            haystack_docs = store.filter_documents(filters=kwargs.get('filters')) # Pass filters if provided via kwargs
+            logger.info(f"Retrieved {len(haystack_docs)} documents from store.")
+            # Convert to simple dicts
+            results = []
+            for doc in haystack_docs:
+                 doc_dict = {"id": doc.id} # ID is essential
+                 if include_metadata:
+                     # Ensure content_hash is included if it exists in meta
+                     doc_dict["meta"] = doc.meta
+                 # Optionally include content? Protocol doesn't require it.
+                 # doc_dict["content"] = doc.content
+                 results.append(doc_dict)
+            return results
+        except Exception as e:
+            logger.error(f"Failed to list documents from store '{self.collection_name}': {e}", exc_info=True)
+            raise RuntimeError(f"Failed to list documents from store '{self.collection_name}'.") from e
+
+
+    def delete_documents(self, ids: List[str]) -> None:
+        """Deletes documents by ID, required for sync."""
+        if not ids:
+            logger.debug("No document IDs provided for deletion. Skipping.")
+            return
+        logger.warning(f"Request to delete {len(ids)} documents from collection '{self.collection_name}'.")
+        store = self._get_store()
+        try:
+            store.delete_documents(ids=ids)
+            logger.info(f"Successfully deleted {len(ids)} documents (if they existed). Store count now: {store.count_documents()}")
+        except Exception as e:
+            logger.error(f"Failed to delete documents with IDs {ids} from store '{self.collection_name}': {e}", exc_info=True)
+            raise RuntimeError(f"Failed to delete documents from store '{self.collection_name}'.") from e