napari-tmidas 0.2.4__py3-none-any.whl → 0.2.6__py3-none-any.whl

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Files changed (7) hide show
  1. napari_tmidas/_version.py +2 -2
  2. {napari_tmidas-0.2.4.dist-info → napari_tmidas-0.2.6.dist-info}/METADATA +4 -7
  3. {napari_tmidas-0.2.4.dist-info → napari_tmidas-0.2.6.dist-info}/RECORD +7 -7
  4. {napari_tmidas-0.2.4.dist-info → napari_tmidas-0.2.6.dist-info}/WHEEL +0 -0
  5. {napari_tmidas-0.2.4.dist-info → napari_tmidas-0.2.6.dist-info}/entry_points.txt +0 -0
  6. {napari_tmidas-0.2.4.dist-info → napari_tmidas-0.2.6.dist-info}/licenses/LICENSE +0 -0
  7. {napari_tmidas-0.2.4.dist-info → napari_tmidas-0.2.6.dist-info}/top_level.txt +0 -0
napari_tmidas/_version.py CHANGED
@@ -28,7 +28,7 @@ version_tuple: VERSION_TUPLE
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  commit_id: COMMIT_ID
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  __commit_id__: COMMIT_ID
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- __version__ = version = '0.2.4'
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- __version_tuple__ = version_tuple = (0, 2, 4)
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+ __version__ = version = '0.2.6'
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+ __version_tuple__ = version_tuple = (0, 2, 6)
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  __commit_id__ = commit_id = None
{napari_tmidas-0.2.4.dist-info → napari_tmidas-0.2.6.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: napari-tmidas
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- Version: 0.2.4
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+ Version: 0.2.6
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  Summary: A plugin for batch processing of confocal and whole-slide microscopy images of biological tissues
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  Author: Marco Meer
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  Author-email: marco.meer@pm.me
@@ -96,6 +96,7 @@ Dynamic: license-file
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  [![PyPI](https://img.shields.io/pypi/v/napari-tmidas.svg?color=green)](https://pypi.org/project/napari-tmidas)
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  [![Python Version](https://img.shields.io/pypi/pyversions/napari-tmidas.svg?color=green)](https://python.org)
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  [![Downloads](https://static.pepy.tech/badge/napari-tmidas)](https://pepy.tech/project/napari-tmidas)
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+ [![DOI](https://zenodo.org/badge/698257324.svg)](https://zenodo.org/badge/latestdoi/698257324)
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  [![tests](https://github.com/macromeer/napari-tmidas/workflows/tests/badge.svg)](https://github.com/macromeer/napari-tmidas/actions)
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  This napari plugin consists of a growing collection of pipelines for fast batch processing of confocal and whole slide microscopy images of biological tissues. This is a WIP and based on the [T-MIDAS terminal](https://github.com/MercaderLabAnatomy/T-MIDAS).
@@ -131,13 +132,9 @@ It is recommended though to install the **latest development version**. Please a
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  ### Additional Setup for Batch Crop Anything
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- To use the Batch Crop Anything pipeline with SAM2, you need to install SAM2 separately:
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+ To use the Batch Crop Anything pipeline with SAM2, you only need to install ffmpeg manually. SAM2 and its model checkpoints will be automatically installed when you first run the pipeline:
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- cd /opt # if the folder does not exist: mkdir /opt && cd /opt
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- git clone https://github.com/facebookresearch/sam2.git && cd sam2
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- pip install -e .
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- curl -L https://dl.fbaipublicfiles.com/segment_anything_2/092824/sam2.1_hiera_large.pt -o checkpoints/sam2.1_hiera_large.pt
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- mamba install -c conda-forge ffmpeg # we also need ffmpeg
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+ mamba install -c conda-forge ffmpeg
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  If you want to batch compress image data using [Zstandard](https://github.com/facebook/zstd), use the package manager of your operating system to install it:
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{napari_tmidas-0.2.4.dist-info → napari_tmidas-0.2.6.dist-info}/RECORD RENAMED
@@ -10,7 +10,7 @@ napari_tmidas/_registry.py,sha256=yunbEoDe1JZREMab4BeP7wka17IwK1toV5g1imju30c,21
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  napari_tmidas/_roi_colocalization.py,sha256=0ZSs7JlJKPhGibnETf6Rj746T3YV4AUgynWmZbmNjHw,92257
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  napari_tmidas/_sample_data.py,sha256=khuv1jemz_fCjqNwEKMFf83Ju0EN4S89IKydsUMmUxw,645
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  napari_tmidas/_ui_utils.py,sha256=wBmaR-3wdgizb234atsjUU2DElsM5-tf4TIsxGLaHzI,1499
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- napari_tmidas/_version.py,sha256=NRw4Jle4n9v_DD2wtplRqflGCvX8OU5eAjycYY0vY3Y,704
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+ napari_tmidas/_version.py,sha256=2Q6v117QPuRsVsIEaHT3nJJVx7xxa47FYOkmuhVbGAI,704
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  napari_tmidas/_widget.py,sha256=Uab5WuJK2fgdlGga6iNnHsiZjRMUq2KM3u0N5JJW8DA,5495
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  napari_tmidas/_writer.py,sha256=wbVfHFjjHdybSg37VR4lVmL-kdCkDZsUPDJ66AVLaFQ,1941
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  napari_tmidas/napari.yaml,sha256=1Am1dA0-ZtCXk6veIT6jrMz3zwQ7dF8_p9tZTFx_vTg,2641
@@ -55,9 +55,9 @@ napari_tmidas/processing_functions/spotiflow_detection.py,sha256=2FLnDNXLc0eNj8v
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  napari_tmidas/processing_functions/spotiflow_env_manager.py,sha256=07J_tYADMvIVIr_afniSNt8uEduecqpNblSWEj9aH7Q,20323
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  napari_tmidas/processing_functions/timepoint_merger.py,sha256=7pXyfcI2rXZz6_TP3v_WejmMFivNVyUzkzBmifMiFKA,27424
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  napari_tmidas/processing_functions/trackastra_tracking.py,sha256=IkFk5HoEZmKdcu5jXri4WMhHN1KTADDMxSpeYfPgSbo,9976
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- napari_tmidas-0.2.4.dist-info/licenses/LICENSE,sha256=tSjiOqj57exmEIfP2YVPCEeQf0cH49S6HheQR8IiY3g,1485
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- napari_tmidas-0.2.4.dist-info/METADATA,sha256=NBJTIL9QGfMkrLPVq4G-Xr-HNeZ7G2zWOlbAAM0F0uo,14856
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- napari_tmidas-0.2.4.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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- napari_tmidas-0.2.4.dist-info/entry_points.txt,sha256=fbVjzbJTm4aDMIBtel1Lyqvq-CwXY7wmCOo_zJ-jtRY,60
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- napari_tmidas-0.2.4.dist-info/top_level.txt,sha256=63ybdxCZ4SeT13f_Ou4TsivGV_2Gtm_pJOXToAt30_E,14
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- napari_tmidas-0.2.4.dist-info/RECORD,,
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+ napari_tmidas-0.2.6.dist-info/licenses/LICENSE,sha256=tSjiOqj57exmEIfP2YVPCEeQf0cH49S6HheQR8IiY3g,1485
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+ napari_tmidas-0.2.6.dist-info/METADATA,sha256=UAU72bMdD7bTiV1E5cvnxzTP7s-Iz8Z0GVR5Szf_TVE,14745
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+ napari_tmidas-0.2.6.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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+ napari_tmidas-0.2.6.dist-info/entry_points.txt,sha256=fbVjzbJTm4aDMIBtel1Lyqvq-CwXY7wmCOo_zJ-jtRY,60
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+ napari_tmidas-0.2.6.dist-info/top_level.txt,sha256=63ybdxCZ4SeT13f_Ou4TsivGV_2Gtm_pJOXToAt30_E,14
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+ napari_tmidas-0.2.6.dist-info/RECORD,,