nabu 2025.1.0.dev14__py3-none-any.whl → 2025.1.0rc2__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (65) hide show
  1. doc/doc_config.py +32 -0
  2. nabu/__init__.py +1 -1
  3. nabu/app/cast_volume.py +9 -1
  4. nabu/app/cli_configs.py +80 -3
  5. nabu/app/estimate_motion.py +54 -0
  6. nabu/app/multicor.py +2 -4
  7. nabu/app/pcaflats.py +116 -0
  8. nabu/app/reconstruct.py +1 -7
  9. nabu/app/reduce_dark_flat.py +5 -2
  10. nabu/estimation/cor.py +1 -1
  11. nabu/estimation/motion.py +557 -0
  12. nabu/estimation/tests/test_motion_estimation.py +471 -0
  13. nabu/estimation/tilt.py +1 -1
  14. nabu/estimation/translation.py +47 -1
  15. nabu/io/cast_volume.py +100 -13
  16. nabu/io/reader.py +32 -1
  17. nabu/io/tests/test_remove_volume.py +152 -0
  18. nabu/pipeline/config_validators.py +42 -43
  19. nabu/pipeline/estimators.py +255 -0
  20. nabu/pipeline/fullfield/chunked.py +67 -43
  21. nabu/pipeline/fullfield/chunked_cuda.py +5 -2
  22. nabu/pipeline/fullfield/nabu_config.py +20 -14
  23. nabu/pipeline/fullfield/processconfig.py +17 -3
  24. nabu/pipeline/fullfield/reconstruction.py +4 -1
  25. nabu/pipeline/params.py +12 -0
  26. nabu/pipeline/tests/test_estimators.py +240 -3
  27. nabu/preproc/ccd.py +53 -3
  28. nabu/preproc/flatfield.py +306 -1
  29. nabu/preproc/shift.py +3 -1
  30. nabu/preproc/tests/test_pcaflats.py +154 -0
  31. nabu/processing/rotation_cuda.py +3 -1
  32. nabu/processing/tests/test_rotation.py +4 -2
  33. nabu/reconstruction/astra.py +245 -0
  34. nabu/reconstruction/fbp.py +7 -0
  35. nabu/reconstruction/fbp_base.py +31 -7
  36. nabu/reconstruction/fbp_opencl.py +8 -0
  37. nabu/reconstruction/filtering_opencl.py +2 -0
  38. nabu/reconstruction/mlem.py +47 -13
  39. nabu/reconstruction/tests/test_filtering.py +13 -2
  40. nabu/reconstruction/tests/test_mlem.py +91 -62
  41. nabu/resources/dataset_analyzer.py +144 -20
  42. nabu/resources/nxflatfield.py +101 -35
  43. nabu/resources/tests/test_nxflatfield.py +1 -1
  44. nabu/resources/utils.py +16 -10
  45. nabu/stitching/alignment.py +7 -7
  46. nabu/stitching/config.py +22 -20
  47. nabu/stitching/definitions.py +2 -2
  48. nabu/stitching/overlap.py +4 -4
  49. nabu/stitching/sample_normalization.py +5 -5
  50. nabu/stitching/stitcher/post_processing.py +5 -3
  51. nabu/stitching/stitcher/pre_processing.py +24 -20
  52. nabu/stitching/tests/test_config.py +3 -3
  53. nabu/stitching/tests/test_y_preprocessing_stitching.py +11 -8
  54. nabu/stitching/tests/test_z_postprocessing_stitching.py +2 -2
  55. nabu/stitching/tests/test_z_preprocessing_stitching.py +23 -20
  56. nabu/stitching/utils/utils.py +7 -7
  57. nabu/testutils.py +1 -4
  58. nabu/utils.py +13 -0
  59. {nabu-2025.1.0.dev14.dist-info → nabu-2025.1.0rc2.dist-info}/METADATA +3 -4
  60. {nabu-2025.1.0.dev14.dist-info → nabu-2025.1.0rc2.dist-info}/RECORD +64 -57
  61. {nabu-2025.1.0.dev14.dist-info → nabu-2025.1.0rc2.dist-info}/WHEEL +1 -1
  62. {nabu-2025.1.0.dev14.dist-info → nabu-2025.1.0rc2.dist-info}/entry_points.txt +2 -1
  63. nabu/app/correct_rot.py +0 -62
  64. {nabu-2025.1.0.dev14.dist-info → nabu-2025.1.0rc2.dist-info}/licenses/LICENSE +0 -0
  65. {nabu-2025.1.0.dev14.dist-info → nabu-2025.1.0rc2.dist-info}/top_level.txt +0 -0
@@ -1,31 +1,33 @@
1
1
  doc/conf.py,sha256=3xtCarCHrXPr50GbeRDuH-o3Jzojw7mpr7vpGfZPLAE,3787
2
2
  doc/create_conf_doc.py,sha256=IVOdP70KvbW9WS_UQu3Iyd0YfS60E2fJ5IDtQ_s4cDw,1143
3
+ doc/doc_config.py,sha256=anqeOVjqE2e7eVzg7yuh9dvIneTkrA5doGl1cVBqT7Q,730
3
4
  doc/get_mathjax.py,sha256=VIvKRCdDuF2VoY8JD3mSey9XX13AZMmwTJBHdt1tUs4,1012
4
- nabu/__init__.py,sha256=Lgb48elUmH-YevNEaVmLMkcg510J3eCdpEviDuB7MhA,276
5
+ nabu/__init__.py,sha256=QueX4--BpvfYX_Z3n6mCQ68QSUVU7ffJx7fyF8CRDJ0,274
5
6
  nabu/tests.py,sha256=hOJD1GGxn_KE1bWMoxfjnjzI7d9JBUpoc9B2_tVFiEk,1370
6
- nabu/testutils.py,sha256=PmQVGkQmLjq1oX8C_rE8N5yceVNbUifPuNMiE6cQq7k,8667
7
- nabu/utils.py,sha256=XFk8_sUupngl5g1aFEE7IL_AzL9eJUV_ikmjiGfJNDA,26727
7
+ nabu/testutils.py,sha256=eL81DWgYwu2CCFmDMsFs4QjfI7w9RPXFuPU5gvYF6No,8631
8
+ nabu/utils.py,sha256=tJI64BNXMhD6W293fwwcgf9bvTalYG_5AwVGYkgi6tU,27179
8
9
  nabu/app/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
9
10
  nabu/app/bootstrap.py,sha256=3yLZJmrmQBmPJMBtE2ih2cspfqOy5T_UN2U8B3i_hkI,3266
10
11
  nabu/app/bootstrap_stitching.py,sha256=wCKgugOQr6-lPMWEn4AYQeric0tCuRc9O-RnpBuTWAA,2230
11
- nabu/app/cast_volume.py,sha256=fBjVWOgLWS_JBF5qEdN-b-7GCOQVx15cwerh4BmAsTQ,11171
12
- nabu/app/cli_configs.py,sha256=wM5p6cJNhsIWu4kqCiuO8UDKA3eXqkMXG0HiUjZqS7k,22150
12
+ nabu/app/cast_volume.py,sha256=OufJDx_ZJ-ZbhbvIPHxRox4jtL6PfWcL148g77BWCDU,11454
13
+ nabu/app/cli_configs.py,sha256=D3KaMVnZ9eLnSzgSJmdNWhxF0GESbmXMYiNeOBzu1vY,24794
13
14
  nabu/app/compare_volumes.py,sha256=3qm3QsxV-D_myLAkhM_LlX0DTrDmhzfhrnNak-1538Q,3337
14
15
  nabu/app/composite_cor.py,sha256=-qAbMJCFa0NmSb1hO2G1QvdW4fwEXSMBBbSFCnQXmCc,5068
15
- nabu/app/correct_rot.py,sha256=rIgBZZ_q-WPTy0mH22_XUXSXYqmR9DQkKlgEw_ol1kI,1988
16
16
  nabu/app/create_distortion_map_from_poly.py,sha256=aa-vE-ndB9PsuHwdHUW7-8jGz4BxvjC-bQDWHlPV0Kg,6193
17
17
  nabu/app/diag_to_pix.py,sha256=KKIj4YrcvEc8Ey-_T3yvxeSKTfrY5o13ekteMQN_cr4,14987
18
18
  nabu/app/diag_to_rot.py,sha256=tBaF1Oy0-bjCqkLFK-Bu_n74easzLlRkI_FTC1cAH2Q,16933
19
19
  nabu/app/double_flatfield.py,sha256=1yquRUIHYXmrIg7NGHMDIXpkUCS_muEioUeqLyWf8PI,5641
20
+ nabu/app/estimate_motion.py,sha256=VyUv3scqbzj8mlccdMO3XgI-HIekFjxFtlVEGd2swo4,2079
20
21
  nabu/app/generate_header.py,sha256=Voo-FAvwS_mU5gtDxyqpZnSpP_mlMSfd_6bEtgdi_tg,8919
21
22
  nabu/app/histogram.py,sha256=gyLXKwFrU5WPQMkM1k8OdpIXSwGEEKC-f8RcTHKOho4,7930
22
- nabu/app/multicor.py,sha256=Q9sxHSaCmahhf9hFZxX2jlfhk0me4ORBnHYfEwLo2dY,4725
23
+ nabu/app/multicor.py,sha256=FjmJurruRmrwXF7v56KlTszQGIGsqft1_P7AKR9feY0,4726
23
24
  nabu/app/nx_z_splitter.py,sha256=p54jR-PAAw-AkGolM9fZE5lM2vbNLspCNCy5zBnJNP4,4976
24
25
  nabu/app/parse_reconstruction_log.py,sha256=msOtA3xaqLZpISRqS0F9_SrkvbdvKNPE99tdWhPrkY0,4745
26
+ nabu/app/pcaflats.py,sha256=R1udJSdJwfGwBL557HoPH6dVzka7ULMFI0JHUZfR7ds,4018
25
27
  nabu/app/prepare_weights_double.py,sha256=jy78aP1UNKqSk82Wy6ZCkKjpYXxaGmlIj_vjB4SxS8A,5443
26
- nabu/app/reconstruct.py,sha256=L5N6BnP8lUQbXGi4NtcAZQ7h-T8CbyiBBP6s1SlPqrg,5792
28
+ nabu/app/reconstruct.py,sha256=g_pkrs11QFuclgxKLih1JCRLhyM-Ln8ACXlMspA2phc,5681
27
29
  nabu/app/reconstruct_helical.py,sha256=cMjcc8IUGUtqAOfObsznLkcGm6Ev4ZoE_vJa--fDSNQ,4257
28
- nabu/app/reduce_dark_flat.py,sha256=nJ67oRGRWRw3P5Q3oTdW17_SszVxwkNSiYUjTkZJQZA,6555
30
+ nabu/app/reduce_dark_flat.py,sha256=nJg94M64Mtvcc8B-mKQT056s30fEJRHFYPMcxH3GGJ0,6599
29
31
  nabu/app/rotate.py,sha256=st9tPf9XSH_nYPivANbcvBwDcY3snH-fYXJhVh7Suh4,6503
30
32
  nabu/app/shrink_dataset.py,sha256=P9dorO0Q-gPAWgSHyZi3XQp4jkMTJacDYzNvJY4oh98,3507
31
33
  nabu/app/stitching.py,sha256=WAcAAxWw9nTpajp273KylfRc-Rxw7HmyqzSLjJ4sWh4,4418
@@ -64,29 +66,32 @@ nabu/cuda/src/transpose.cu,sha256=Enim7vLxTCFZbK3BmYdQ6ZatA_FLp6601VOSl8iGFjg,47
64
66
  nabu/cuda/tests/__init__.py,sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs,1
65
67
  nabu/estimation/__init__.py,sha256=HWE3ivArjlJx4FjFh2Q73VmpIyzod80KTmXvFo1AP1s,379
66
68
  nabu/estimation/alignment.py,sha256=i7q6txkHDXuxusJ9bi6MlMVpOR8yv07LeWkKXGwqSz0,20839
67
- nabu/estimation/cor.py,sha256=Hk3aRDoP5JRIWQO-mqZWtyb84Fy-Pe9hrYOKRQZoOws,50275
69
+ nabu/estimation/cor.py,sha256=8RsyZ_MYT04EWvP2tLThftn_bD3cz9-uWo8D5FpXLKQ,50353
68
70
  nabu/estimation/cor_sino.py,sha256=qN6y16UVqoDX696JYyn3iWXDxQo0FMcFTuGbT92BW_s,18959
69
71
  nabu/estimation/distortion.py,sha256=DEXizQpgHBXmrhbQ0kuEchicxmiDgmU2qrh8bCgSezg,4701
70
72
  nabu/estimation/focus.py,sha256=CdtMFk6Xt4qq1JwwKDmDcVCeVocz-mpV0saikO0B1mc,17995
71
- nabu/estimation/tilt.py,sha256=VllpMNX-_4XIyqSFYSh4y_rxnZX9U1ZlpflHjBS6hp0,8765
72
- nabu/estimation/translation.py,sha256=L-SCLozW1I-FyGta9LjbNPLYRnaznwenF-p9rISM2pE,8581
73
+ nabu/estimation/motion.py,sha256=8fgwGsJMZleUugCCMRyZ2Zfi6-fWp-_dJpUnvetxGvk,26501
74
+ nabu/estimation/tilt.py,sha256=6R8l8gnf00m-xdgLhvQmkvZ3lIO_8hDglNsFjzlzZ4E,8834
75
+ nabu/estimation/translation.py,sha256=qoxT8VT38TZqrqLRwOef7-wBE5OeEObp_Qy9T2De2Do,10184
73
76
  nabu/estimation/utils.py,sha256=31d17Ng__NxcLOtGXPmbPPW1veh1m0poCvRgDCJssUA,347
74
77
  nabu/estimation/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
75
78
  nabu/estimation/tests/test_alignment.py,sha256=knNn_IqVd5MR-K3LBNc1BkREZF9V8aRD829K_zD1atY,2513
76
79
  nabu/estimation/tests/test_cor.py,sha256=YKrZc1v33WBcNEOTmzoifnotghgvUL8-78B0IxCmjCs,23811
77
80
  nabu/estimation/tests/test_focus.py,sha256=cMxEeTLlfVHOvG_4oGMLpp6bVI6okYz0u4aNcW0vmNI,4188
81
+ nabu/estimation/tests/test_motion_estimation.py,sha256=WKUpkVand8VszoBIvsaEnhKqvwlsr4NVNtTaNvd-nsE,19179
78
82
  nabu/estimation/tests/test_tilt.py,sha256=KIgTJqQvNfWndm8f3aRSdznWFl3AdQhYXiZPKLseYOs,1672
79
83
  nabu/estimation/tests/test_translation.py,sha256=RkOnCYgk9DZGKlIka1snqTv4wbIz_nG7-EHAxnBHsJU,2999
80
84
  nabu/io/__init__.py,sha256=AbQgj4-fCCHOKynO_PyAR9ejnFSuWKgroxxhxWVpjyQ,120
81
- nabu/io/cast_volume.py,sha256=56HDNQ3mr7krylMGWW8aBXZ6d3FAGfKK-syppDv1P8k,17573
85
+ nabu/io/cast_volume.py,sha256=Kn9BtAx0FAmCd57W6C8WTk1jp5j1l6mrIo45SYFVrvg,21408
82
86
  nabu/io/detector_distortion.py,sha256=qO1Z6gejkBrixThvU_sLwH3UfLAe8aAO63YQ8z7PH78,11750
83
- nabu/io/reader.py,sha256=D5pOhOPadySvl7YkZmIIb9ZUJGpv5dITvb6r5RHZAkE,40525
87
+ nabu/io/reader.py,sha256=M6kLLzDe-OLh4veNr_F1Nn4TT6E6RfBpWPxMxrsnL94,41324
84
88
  nabu/io/reader_helical.py,sha256=q3LOmu6F_4Uxi3rZZWJ-rsix2Lgu_saXXdiJF8TLi24,4533
85
89
  nabu/io/utils.py,sha256=iSeBhOIcLlKgiHXdDLfAdyvSrgdv6I5iQUcjT2gv_WQ,9303
86
90
  nabu/io/writer.py,sha256=0bZ2X0hvT-r_2Uu2u3fIfXZH7clxKIDhBwHmBS0ZcxM,15811
87
91
  nabu/io/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
88
92
  nabu/io/tests/test_cast_volume.py,sha256=UGrIYVp1fxm372YFJinLWAL-xCtcR731axYchhonZHY,10774
89
93
  nabu/io/tests/test_readers.py,sha256=E26UE_nwqKcA6fBvzSdANNwqJ4Py07Dho61ShcMLb50,18131
94
+ nabu/io/tests/test_remove_volume.py,sha256=q632Rq0qLneDcJLHGWCR8HYlvdnTvaEEyTQAsNv1ggM,5967
90
95
  nabu/io/tests/test_writers.py,sha256=EJp3DKeaRko7FVTgGdjrl2tt6jES228_XT5Jb767I0w,3137
91
96
  nabu/misc/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
92
97
  nabu/misc/binning.py,sha256=x7mbKTfEKF8ZaZoPq2LJl9hfUsQ0qMNGMxaHE98PcNc,2920
@@ -126,25 +131,25 @@ nabu/opencl/src/transpose.cl,sha256=jFRIFccPefzbKFEqEIVYGrWac5XJs3FY1tEmvCzA74E,
126
131
  nabu/opencl/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
127
132
  nabu/pipeline/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
128
133
  nabu/pipeline/config.py,sha256=rOpCHywEi_StPDaz-fSYc36ondCMamMPhMy7o03HcJk,9207
129
- nabu/pipeline/config_validators.py,sha256=ertytKkgp154AI0lOZbCWK9vMugSEoWVp7dy1x32wsk,16395
134
+ nabu/pipeline/config_validators.py,sha256=Wx9nnUpfxTJ8H2ODkUyjImTtJS9V68TafLH1TecEFxI,16222
130
135
  nabu/pipeline/datadump.py,sha256=tKW-Dl28FU2vf1OuIie_YI1-GT1DMreis57sOR-DuGU,7026
131
136
  nabu/pipeline/dataset_validator.py,sha256=etQw9NC_YGsdWCgjsn8aJ3WfvcRuJlLVZlWoqhvvo-8,9263
132
137
  nabu/pipeline/detector_distortion_provider.py,sha256=ru1AxbcuO-FA8FYooPBWgp1lzdSDUtzFUC1A_sS8jME,920
133
- nabu/pipeline/estimators.py,sha256=QAX0ZZicaRp81ffN8XjDlk_WGVOfy6nZBqtiW_Fr5Lo,40445
134
- nabu/pipeline/params.py,sha256=o4uD1v8eqNXDqxpNoC7rHOHgg-8cf5q_KfGrnHPP3sE,3882
138
+ nabu/pipeline/estimators.py,sha256=8OKGEMn6VKwyy1FK1eADokP32AOolsXM8pmwc4FOs8E,51556
139
+ nabu/pipeline/params.py,sha256=UKMQWFQnrlNMW5aIGty-JoGmBdkS6tpoAXCjW8n6FX8,4229
135
140
  nabu/pipeline/processconfig.py,sha256=3xx2Lc8uEzPAqSMwUncr4RCiCtKn2c7wnXXbPSn8GNo,7719
136
141
  nabu/pipeline/reader.py,sha256=wkxPHYOi_C8dHNc7kddB8AMtFuW7GjsP_tm6SJeHlEY,4792
137
142
  nabu/pipeline/utils.py,sha256=5GGhT9Wu7tHDlF3w7YNjTTYkNBl5xHa9EcRZSGFUWtM,3538
138
143
  nabu/pipeline/writer.py,sha256=NVeAtkWDtXg5UJ4C3wsbkfM23ZnK64atCWl8tjmjsuY,8166
139
144
  nabu/pipeline/fullfield/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
140
- nabu/pipeline/fullfield/chunked.py,sha256=xuLkZk18fRbyNJcYl3mY-oEFpnKtOw-1vyMl8LvQ_mk,40954
141
- nabu/pipeline/fullfield/chunked_cuda.py,sha256=Jdkk6ZIt3S6UZYbupHtSj2vrj3krWMcqRHHprfblDfk,5848
145
+ nabu/pipeline/fullfield/chunked.py,sha256=MVqIceFGZKQZSiNa1PfetXrNAVlto-a4K4b_AyWtZnA,42534
146
+ nabu/pipeline/fullfield/chunked_cuda.py,sha256=US5prrhNjsx3QVHkY5duQp8uFcGdgYEPzVS7nfWkJRw,6047
142
147
  nabu/pipeline/fullfield/computations.py,sha256=uqf7LvuDPm7n51BpP8eb8vTewDgRFyzSDP249g3FWBE,10098
143
148
  nabu/pipeline/fullfield/dataset_validator.py,sha256=HK_bmlII9pc59PXCgKJOyLv7Xu3DYv_jbH3RmQSgzvI,2933
144
149
  nabu/pipeline/fullfield/get_double_flatfield.py,sha256=uYFDAii6Nw4RCUQO_6Id6tXLdmtVbj_pxAHQWennSeE,5411
145
- nabu/pipeline/fullfield/nabu_config.py,sha256=gSsWXEyQsCpQnrWtqhMSYAiNZLXdYnWwCiQzmYplxWI,32700
146
- nabu/pipeline/fullfield/processconfig.py,sha256=MISwEwb57hJRWr4Vih2cPA503CVMccqrsaTzmUt-BFk,37726
147
- nabu/pipeline/fullfield/reconstruction.py,sha256=sXI0NIFUc9nAhbAW6M52mbqalc6mFO315rrCl5r1RoY,37775
150
+ nabu/pipeline/fullfield/nabu_config.py,sha256=F1E4KwHTfw6tynBnBjvr1F6tflIFsvDp8Pyop7xNmGg,33146
151
+ nabu/pipeline/fullfield/processconfig.py,sha256=9KSvj5y-PmiXAf_nTIjCn6938fMyUqArVM16-2pxHbc,38461
152
+ nabu/pipeline/fullfield/reconstruction.py,sha256=cljRyxD8rvZ5qDws_5AwChi7P-5T_0SSXsGkYUGOVb8,38006
148
153
  nabu/pipeline/helical/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
149
154
  nabu/pipeline/helical/dataset_validator.py,sha256=HdKjUSj3PIpJb1dKSzJg8s4zXbAnMPWaPn8kvp_xQEs,657
150
155
  nabu/pipeline/helical/fbp.py,sha256=MKn587bO5Lj7yFu-Sll2RkOIY5r3rC-fmC10SzFU5i0,5841
@@ -160,11 +165,11 @@ nabu/pipeline/helical/span_strategy.py,sha256=tKLWQv2woj3SSW5JLJu5pNbv48fy0vYNej
160
165
  nabu/pipeline/helical/weight_balancer.py,sha256=9yQodctr1qUZFOEA-xfvUiolr-tI-HjX0Y8YIlO5gII,3975
161
166
  nabu/pipeline/helical/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
162
167
  nabu/pipeline/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
163
- nabu/pipeline/tests/test_estimators.py,sha256=usi2Rp0zry5ADJV9k8nHhCqdDBSuHguZvyH-jkg-F48,6146
168
+ nabu/pipeline/tests/test_estimators.py,sha256=fYSc5ZA9j7e--AC9D4es7cSQ8-e0FsYq4IfXv4-LBcs,14901
164
169
  nabu/pipeline/xrdct/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
165
170
  nabu/preproc/__init__.py,sha256=dKxvZvWZXjKS3iPRaSXiUeM2dNGIOyTlirq5pdAWY0Y,284
166
171
  nabu/preproc/alignment.py,sha256=PUw4YdpCmY6FVkUaosaT6LxFoNgPv7XHFy11Fhz1_6w,19
167
- nabu/preproc/ccd.py,sha256=AHU9iwXLrzisMOfIfMtKwDfd9vP5m_-MBI0rmP4u7eg,5145
172
+ nabu/preproc/ccd.py,sha256=QEe6c0bynAziE-r1obWLNRZ1i6xqpwlitT0eMN_r678,6977
168
173
  nabu/preproc/ccd_cuda.py,sha256=IckZjk0fznVgX6VlBWZEURar_RqvMTN-g87Aj6Y8rJk,6093
169
174
  nabu/preproc/ctf.py,sha256=LEZT5fawEIIT3Qx0V0910RSv8aPLYuuHDrMzTYqyd5o,14981
170
175
  nabu/preproc/ctf_cuda.py,sha256=j6s8JOYQ7IVuu5HHAoGJhbTRW2zi7t5d6YrcAxIU0aQ,5268
@@ -172,12 +177,12 @@ nabu/preproc/distortion.py,sha256=XksQNrrSBfZS7mlvIdVEMZjw839ppQWP6AitTLcgfb0,33
172
177
  nabu/preproc/double_flatfield.py,sha256=WcYsNuotgQgm_KaioNa3OVI8rGfk3Wrn_YCW5v4mo4w,7895
173
178
  nabu/preproc/double_flatfield_cuda.py,sha256=lqgvZyeujdWJ5nF_GNRMQx7punjqA3SZ8K3IIyL3HDY,6197
174
179
  nabu/preproc/double_flatfield_variable_region.py,sha256=yiyvfGLFv3b93aKzHw84EQszPwQHfBv0PqtlQ8khvm4,2258
175
- nabu/preproc/flatfield.py,sha256=EX4zz7l8YddyGcY8bSF0QLeu7XQWzxj1jLXf70_t4Vs,19401
180
+ nabu/preproc/flatfield.py,sha256=pjXDcICtRtErj3_s3eBMkytqj0JL2hwjnwTKoDbZFLk,30572
176
181
  nabu/preproc/flatfield_cuda.py,sha256=Iiqv7bHa870DZOH68L19xiN1kG9I9JXuckFfA3khGtY,5482
177
182
  nabu/preproc/flatfield_variable_region.py,sha256=RVmSW515vgkHagjqotPNPUe97oQooHgdqkBn6hPH_2Q,3142
178
183
  nabu/preproc/phase.py,sha256=nRFhnHN_Bmmu5AHDcoO-Kt59sXYFSQaTljHZ5dlZiA0,13857
179
184
  nabu/preproc/phase_cuda.py,sha256=2oGjpmSl8U6dbzxrU_pt-_3JFm3XeBMCTCUNoxjIAuw,4944
180
- nabu/preproc/shift.py,sha256=CT1i-G7Bs36hK5CGYBik05qAcKj82YpBZKNL3brcbzw,3419
185
+ nabu/preproc/shift.py,sha256=wAzZgafxbgboAZAs_m3q6Hxlz2ztMMN4FRY5balwNsE,3501
181
186
  nabu/preproc/shift_cuda.py,sha256=4YOVRZ4oECEVWOQ6MzDBh8cOY2RtOOhlU7tir0Tp77M,4125
182
187
  nabu/preproc/tests/__init__.py,sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs,1
183
188
  nabu/preproc/tests/test_ccd_corr.py,sha256=KIpwaWYWT_6OPVXyVuLxXIIWreBkYF0rOnDMiegiLMU,2249
@@ -185,6 +190,7 @@ nabu/preproc/tests/test_ctf.py,sha256=4KtjLdiMqwtv3ZJgk-q5xzxoxSnKL_wleZtEgEgEw2
185
190
  nabu/preproc/tests/test_double_flatfield.py,sha256=qUmgAktFHqzKJBHHfj3GJzorey0yk7R0e4nr8dRmbTo,2870
186
191
  nabu/preproc/tests/test_flatfield.py,sha256=8_vmTtfmrpbuKUr4fW8NmtH-PtGWkSQkMBFD6hs0ul4,21055
187
192
  nabu/preproc/tests/test_paganin.py,sha256=Ixlp624o0xtFs12akN6sDn-gHWXm1wVlcdumm2prqh4,2978
193
+ nabu/preproc/tests/test_pcaflats.py,sha256=tZpMNzEtcqhLgnfl02VYyn9Ez8_YmZgtHAZublYNTHo,6356
188
194
  nabu/preproc/tests/test_vshift.py,sha256=Gq9sDtbbAAdLTJALH2qcbeYXE5dINQ8QpBnCgZM0tFQ,2972
189
195
  nabu/processing/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
190
196
  nabu/processing/azim.py,sha256=GIv_C1NYjUP3IYd51qvfECTDu-rfs3Dl2Hb5-ZhdhHY,7080
@@ -205,7 +211,7 @@ nabu/processing/padding_opencl.py,sha256=H7w5bY9Th9pJKYKaX1_u-XqUj8lM5XWfVViu0ax
205
211
  nabu/processing/processing_base.py,sha256=sbMmkjjYvkqNosGsO8IeC2hlzIqLapdAh-wGv2ssG-o,4477
206
212
  nabu/processing/roll_opencl.py,sha256=ms6ZW7ecG-kWq--wWijAjDB_uVWQtUylFp_EDKmfUKw,2283
207
213
  nabu/processing/rotation.py,sha256=8tVQponi8tv8uPw-xT-0GyZecl3YIXyJgPkEnQMer8M,1836
208
- nabu/processing/rotation_cuda.py,sha256=mfExwPCTyoKFhv8ZmE833jI_D6o-J-p5-TxacGdb-e4,2796
214
+ nabu/processing/rotation_cuda.py,sha256=_NtcrqshEwbD7DUW1NA0HVq0nr8RBAKovEg1DvuADcw,2941
209
215
  nabu/processing/transpose.py,sha256=bOnxEFXJd16YcTGyMS-3lwREIVaDkClE_Fkb8bOn1l8,4410
210
216
  nabu/processing/unsharp.py,sha256=XqoieKlX5sEHalxObi5JBOjauRUSbiHc6rqYT_buTa4,2682
211
217
  nabu/processing/unsharp_cuda.py,sha256=uKFCEk8bRqgJzR8HB_OeKYuwC5jKqaXpFI6pRv_pDY4,2152
@@ -218,19 +224,20 @@ nabu/processing/tests/test_medfilt.py,sha256=rnReK3MMCsc74-NoycYSRSMp7bN4Qdg4cZb
218
224
  nabu/processing/tests/test_muladd.py,sha256=cRhAC5hgmRV0BAwPA4o4M-kcx-UDniLK7sSyiN0F3kE,1927
219
225
  nabu/processing/tests/test_padding.py,sha256=EQXYwAFDvtAjK6KRPAY7fNarRXPixuwqKItM3bkJDKY,8730
220
226
  nabu/processing/tests/test_roll.py,sha256=XtEFz1V_OId1O2hGf4JJjesCyYLxKjoz966sGL-YzEs,2333
221
- nabu/processing/tests/test_rotation.py,sha256=vedRXV9RePJywBKoyBkGANP1dhZCjphbYOhdnsBDQtE,2737
227
+ nabu/processing/tests/test_rotation.py,sha256=5O1yHthJfdoP-2loXob96j_V2IwI2eb8rouCYwDrdKk,2834
222
228
  nabu/processing/tests/test_transpose.py,sha256=hTG17wTaB5Wv6twbW3ZFhBv6BYfqJY7DTQPoO0-KdkM,2760
223
229
  nabu/processing/tests/test_unsharp.py,sha256=R3ovbwDDp3ccy2A8t6CcUVELXRWkED5EnQdN2FQOfQM,4391
224
230
  nabu/reconstruction/__init__.py,sha256=EmKVvx_-FJvzJngG4ielIC7FhMCpI1Waaflg_lF44tk,163
231
+ nabu/reconstruction/astra.py,sha256=qnFYabU-Bzgys8hXjIBcwO2NazrvhNXUYFIkMHc6BmM,10444
225
232
  nabu/reconstruction/cone.py,sha256=tSjaMDHeFV-h_IFbxUqSbhqlWmvlBcJQ8u89Y9Q9gg8,20559
226
- nabu/reconstruction/fbp.py,sha256=Tiz-CkYnDZ6YL6YB-e-BfwPdQEbw1X4GhGPX8gUs7Ng,5520
227
- nabu/reconstruction/fbp_base.py,sha256=NaHGF33TERTB-mCeMJPYLEn_FkZCKCUioSYkNXaA-Xg,17553
228
- nabu/reconstruction/fbp_opencl.py,sha256=coEGLq65PCuvWnhAbIyLPHACkWjMB0XOceMp9ZIDWtc,3274
233
+ nabu/reconstruction/fbp.py,sha256=ptHcQsZTxgMFa9PhFJeTzDekibWR-P1BUj2SvRrk770,5684
234
+ nabu/reconstruction/fbp_base.py,sha256=usd49ctQMI5w6uU5xn8qBsN7gI95iU9a3jRZgSPmOJk,18653
235
+ nabu/reconstruction/fbp_opencl.py,sha256=U-XP7v1m1lJ1ulvlF8tclJfEOWmZLCT1hevIw4gsNec,3497
229
236
  nabu/reconstruction/filtering.py,sha256=monJnA_kk9k_Gy7bMAos9I-XgU8czWhf9vBth6ikcMM,10566
230
237
  nabu/reconstruction/filtering_cuda.py,sha256=_S-BZMhtnNt8ugePSmf-LF7JvMPCOyGPUMSseymgwZw,4019
231
- nabu/reconstruction/filtering_opencl.py,sha256=s65EWrjfUFdScicmNAGyRv8-8OQgapy_HvwMm-J7Lh4,3705
238
+ nabu/reconstruction/filtering_opencl.py,sha256=v-sUzbnRp6M1B221F-iSh-crBCGknjHYYsjFs05VhDY,3788
232
239
  nabu/reconstruction/hbp.py,sha256=Qll7i20LWxUo1-SHRxemkYAolBTP8HScwt1OvWmD2r0,18642
233
- nabu/reconstruction/mlem.py,sha256=cBnzbrT9epp4zuwBlxAty1NmFi6FpMGybvQubBkcOFw,3747
240
+ nabu/reconstruction/mlem.py,sha256=ToQjy81vFvRwNKc8YA8jWAa4Ms6bQSQmRBx8QcBZ_oc,5778
234
241
  nabu/reconstruction/projection.py,sha256=SNocaOY9HuNiHs-VxkW9IS707JPJnd3sDjAbf7aIw2E,9081
235
242
  nabu/reconstruction/reconstructor.py,sha256=16xxHcK4iie-uh-trf6x_IuvgxJKBvQRTE5B8tnc4F8,7358
236
243
  nabu/reconstruction/reconstructor_cuda.py,sha256=m_3GzG44PRyiSEfTvYjgr5atLwl26hMfZOMyqTWxp0g,1644
@@ -243,19 +250,19 @@ nabu/reconstruction/tests/__init__.py,sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-
243
250
  nabu/reconstruction/tests/test_cone.py,sha256=yRx0k1Nv1bTP2IyiwygtIoafQ6v18-qf9J1Rkg_OxSI,22732
244
251
  nabu/reconstruction/tests/test_deringer.py,sha256=3xT7YltisnXa-NUd7aoMe88wOfTiTj-uxC6JFxGXtUA,8352
245
252
  nabu/reconstruction/tests/test_fbp.py,sha256=SLdNjpWp3c7XVRUlR9nKyUvvzEcu9CkFE7WaP6nFxQc,16368
246
- nabu/reconstruction/tests/test_filtering.py,sha256=RXQAEvNIjwiQ-zU6xrkV4h-MkDg3uVBAUyz0tOSIfIw,5581
253
+ nabu/reconstruction/tests/test_filtering.py,sha256=J5U6PDykX2yThQn4fVrln4mNxC2TgwW9xRY7wE9X-dQ,5977
247
254
  nabu/reconstruction/tests/test_halftomo.py,sha256=zCAOFGRaLicr2PLw3628Kdcuj_bhGZz8QZvWBL-c7As,6526
248
- nabu/reconstruction/tests/test_mlem.py,sha256=JWby9nqWqockgUh2RQoqrC8BtfB4v5SCNayk4bBJ4TM,3791
255
+ nabu/reconstruction/tests/test_mlem.py,sha256=QlrBZIJJetRxDRWoMDZ3wNepanAwGd6KgJd3hhoQ7dU,4983
249
256
  nabu/reconstruction/tests/test_projector.py,sha256=QcHLnNWQ6HC9pJo9CdalaaeEDQ_vFpNMn5yXEpfBDXI,6259
250
257
  nabu/reconstruction/tests/test_reconstructor.py,sha256=xzfEM0j48ScQoGqWVcAK74HG97tcF7FsVVLzvX_TgHE,3379
251
258
  nabu/reconstruction/tests/test_sino_normalization.py,sha256=qNnpVUp3UcFGyLlSP0rCzE5hxdV6YENL9AF6mo72WcQ,3669
252
259
  nabu/resources/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
253
260
  nabu/resources/cor.py,sha256=-mcrTbj3G7o4PP5E_gIRo2j6_-ADmMkkOc_0CyQv84c,170
254
- nabu/resources/dataset_analyzer.py,sha256=H32DEnusLVVuITGUjZW-CLvBaV6H22W1UtHZjybaRsI,19562
261
+ nabu/resources/dataset_analyzer.py,sha256=PfYov5UrEkfE3oMLZaVJEpEWQuR5gtxctkA1hPhcpK4,23980
255
262
  nabu/resources/gpu.py,sha256=oQA8PpPdyuIzpxq1PwVd9gJdyCiLIry2godUV1AbPW0,5769
256
263
  nabu/resources/logger.py,sha256=xV9UoLZBw3wXAWYfOgqrnOtzJc9aC1VNO4LM2cHxWJg,3738
257
- nabu/resources/nxflatfield.py,sha256=4B8MYKPEtREOe4ZMTpDVlIxldXPutdI8DgO0P8AeRo0,9317
258
- nabu/resources/utils.py,sha256=LtOWEYneEzz0mDIpUWM23v9ILJ8FM0YFaVG3fFVc7OU,5725
264
+ nabu/resources/nxflatfield.py,sha256=uPivKr4T5AYDGeyxoLns7UL6KYZt_2niNYuSsXrUMm8,12368
265
+ nabu/resources/utils.py,sha256=79iO6I0sXx8VGXZOC9eXquNvasF37A9Zr6r2BYSwJWU,5974
259
266
  nabu/resources/cli/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
260
267
  nabu/resources/templates/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
261
268
  nabu/resources/templates/bm05_pag.conf,sha256=3-Zny2_QlQuZKge53N1vFLZ8yzq-y2cmpAAkByUdHX8,394
@@ -265,15 +272,15 @@ nabu/resources/templates/id16a_fluo.conf,sha256=Nz1etzO2fSwksi7CThWJ5T1kZEdyBe8r
265
272
  nabu/resources/templates/id19_pag.conf,sha256=u4fFPEBprzOW9_5_ChkIgowQcYpLhjmA8Gwm5XgC4Jc,384
266
273
  nabu/resources/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
267
274
  nabu/resources/tests/test_extract.py,sha256=6ufLTc4Wgf9-FLsscpG2TbUDEn767iLVdyOrwRQyI9A,443
268
- nabu/resources/tests/test_nxflatfield.py,sha256=cbUWBOhE9sfdpKmxPTfu3_waPHFC2dZjy6z9gWpfzBA,4193
275
+ nabu/resources/tests/test_nxflatfield.py,sha256=XCiFULzNyApdhr89a3a3BseJMPUN4JnzxQ8VdBaA8ac,4225
269
276
  nabu/resources/tests/test_units.py,sha256=F2jFTck-1UwYET1MwTtX6ntzYUosfwOJkugSencGgz8,2155
270
277
  nabu/stitching/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
271
- nabu/stitching/alignment.py,sha256=UbyhDAYlISeb6pD0NCzdPo1h5rQwjROVP29jsXoYTsg,8954
272
- nabu/stitching/config.py,sha256=_4_cGIBwSDk7BFTKtuZy0x0PuCkK5LD5EJbTVlxxAKM,52966
273
- nabu/stitching/definitions.py,sha256=JbmYwXKxOTYCr2LDXbHO-uNE2OLOBm4ir9AQ7e-Q3lY,158
278
+ nabu/stitching/alignment.py,sha256=J1wNjULS1PTB_37MSvw9-EX1yb5MuNElsqcdk3g9KWU,8923
279
+ nabu/stitching/config.py,sha256=ZYMvbxsJN-lUvJuJiWcVpdF4Pp5Pua3ifCLHP3d87J8,52991
280
+ nabu/stitching/definitions.py,sha256=PhSvXZwe-nPrqFebCs3M-OIKoLvD4oq3XRRnOEBvk7Y,137
274
281
  nabu/stitching/frame_composition.py,sha256=bOuOn3SoyAgtEv_DZon-JbEfh5hW3RySTjK6ERxVZ2w,6626
275
- nabu/stitching/overlap.py,sha256=bW_QjjEOihFqVFVmGt3_nmEx4wYKGjpzSDFL9Q9_o6E,17214
276
- nabu/stitching/sample_normalization.py,sha256=_radin_wxnuD3MMmZNAOKA__aPa2z3ss4TFbZeocpXc,2069
282
+ nabu/stitching/overlap.py,sha256=pGDZqh0TAp3z89yVktO5x-yi0tG-qQugLmRuTO9AFIM,17168
283
+ nabu/stitching/sample_normalization.py,sha256=d6xjDp4-_MA4S2ytPXX3ROV2CBKcY4QAhE52t6HjC50,2025
277
284
  nabu/stitching/single_axis_stitching.py,sha256=bAJlZhUOqW93VkX4nWFNrnQN4G92PHCn-87RpQ34oto,1214
278
285
  nabu/stitching/slurm_utils.py,sha256=kTtqZOrkSLjY_AzL5Fd2n11uqmWPCYHJvN1qbbaGy-E,8993
279
286
  nabu/stitching/stitcher_2D.py,sha256=g9MQttUrJTYNt4SreGjj3PkccyVCQ4MwyUUUbjsweC4,12667
@@ -281,8 +288,8 @@ nabu/stitching/y_stitching.py,sha256=Urt2lBXokxXxX5HFHEiLBqC69yy5b_KyuKFoU8smah4
281
288
  nabu/stitching/z_stitching.py,sha256=gNwj7qWvDFQaGroLVoQnKBPlbvr_CReUQEqxW15m2Ag,1835
282
289
  nabu/stitching/stitcher/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
283
290
  nabu/stitching/stitcher/base.py,sha256=Nyc5L-nvSLWOsrVVq_EP8V9j5AKnFVgxTijStyiF5-I,4326
284
- nabu/stitching/stitcher/post_processing.py,sha256=ztVpSSMaznV61OT9fDkRa2A6Xnpd_IkMvCX4sAp0r2M,26864
285
- nabu/stitching/stitcher/pre_processing.py,sha256=bdnGy_RHXugglLAn0ixKRxenPdEm5jbxJEDGQIoEkJg,51482
291
+ nabu/stitching/stitcher/post_processing.py,sha256=jgNL-3nPevNGHtDKgYMGeJdUxR0ma-qCfzCcYJW8aEI,26868
292
+ nabu/stitching/stitcher/pre_processing.py,sha256=S5bvORC0IsXf82WW1-9YMpk3JzFvp-G9c1mM5_89UKU,51829
286
293
  nabu/stitching/stitcher/single_axis.py,sha256=hocbPKtOmcx9z_Eavyzxj9W-yMgeLlaze6Dsv8NdWVc,20026
287
294
  nabu/stitching/stitcher/stitcher.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
288
295
  nabu/stitching/stitcher/y_stitcher.py,sha256=KXwkyw6cCFcuSBCq5OyAait2Ob_5WRrtawrAlAhk60k,317
@@ -292,18 +299,18 @@ nabu/stitching/stitcher/dumper/base.py,sha256=kenknxtqyg_SQMDsLzd0yBYPlpepCaqyB5
292
299
  nabu/stitching/stitcher/dumper/postprocessing.py,sha256=-50ZIzsBqp1344pcp_eGKaWeCvIXLevPNtvDtDiGP_E,18274
293
300
  nabu/stitching/stitcher/dumper/preprocessing.py,sha256=7qOx27p92Tbbiah6gYEjkxfax7L8ictdrvzqfDm3vHo,2219
294
301
  nabu/stitching/tests/test_alignment.py,sha256=MACak1ILOr8nRKeT0mWfMd-ZvhCl3SWjjcp6GjRbITc,2735
295
- nabu/stitching/tests/test_config.py,sha256=joelu7WubWbT3z5NxhiGdhaMOhI8z7-XkTmN6U9Cc-o,7302
302
+ nabu/stitching/tests/test_config.py,sha256=oFlLm3VCC2DEE948IDU-PE9FklCjZU86K-sd8wvSDvA,7311
296
303
  nabu/stitching/tests/test_frame_composition.py,sha256=fQLT426u-uF5TTURKN48uHKgeYiz3ogTjwo7o4YFE30,4839
297
304
  nabu/stitching/tests/test_overlap.py,sha256=B_iT0pe9b9EJ77V59ilk-_Run6n5a1V9mTDuiPzqieg,7820
298
305
  nabu/stitching/tests/test_sample_normalization.py,sha256=a-F8geN8qrteDeQK37oeSYNdt49siyWFs3fZgPTRn4g,1328
299
306
  nabu/stitching/tests/test_slurm_utils.py,sha256=QTbtx5SRAK1JkbyI-GNSI5xeqVHI8KptD3STpOb09Pc,4951
300
307
  nabu/stitching/tests/test_utils.py,sha256=hIahPlogtnZNr_YkbN_Rcv-y6qG47IiRSSss51-cWK4,647
301
- nabu/stitching/tests/test_y_preprocessing_stitching.py,sha256=Hi7UtxzELBsjeLsvI3Qjq__VXVDsHAuKLJyYalxXtGI,5021
302
- nabu/stitching/tests/test_z_postprocessing_stitching.py,sha256=vAQB8nGa2-GdqGNj7PM63aA_NyXJIefn9JqVByV6jro,26930
303
- nabu/stitching/tests/test_z_preprocessing_stitching.py,sha256=UDka2f6_6ex2Zu4T5hJhjbt5jB19r16pnnfPLL6KiVM,16127
308
+ nabu/stitching/tests/test_y_preprocessing_stitching.py,sha256=9AGMM3glAVsZ-M1v-_DD1u_QWUb5Id5QldIOYnw-1vY,5179
309
+ nabu/stitching/tests/test_z_postprocessing_stitching.py,sha256=vzWPGr2X-kN6WuRMHFMcEnSMjA9xv_TTq3pogpT8uEY,26908
310
+ nabu/stitching/tests/test_z_preprocessing_stitching.py,sha256=aIaYaROpoMflx_wW-cOoLUqmngMEnRCXlQUuoGldcs4,16445
304
311
  nabu/stitching/utils/__init__.py,sha256=alIDGBnxWH4JvP-UW-7N99seBBi0r1GV1h8f1ERFBec,21
305
312
  nabu/stitching/utils/post_processing.py,sha256=aow36shbYhFgAnbCoq6mtXVpjBNCKm7VSLIvv3EYVdA,11303
306
- nabu/stitching/utils/utils.py,sha256=hnS0_TFl5SjsOv03bwSAPUQXbL1t9dsUTR259v9IDZ8,24558
313
+ nabu/stitching/utils/utils.py,sha256=hX9WC-ZpmV31svQnKPO8Ek-uW-RZ3Ot4szfvuYpZjPg,24586
307
314
  nabu/stitching/utils/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
308
315
  nabu/stitching/utils/tests/test_post-processing.py,sha256=X79gYJ2dwF_bjFWVQLu9odHNJaMmljfuI1-ROIp7jdE,766
309
316
  nabu/thirdparty/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -312,9 +319,9 @@ nabu/thirdparty/pore3d_deringer_munch.py,sha256=o4bisnFc-wMjuohWBT8wgWmfNehPQGtC
312
319
  nabu/thirdparty/tomocupy_remove_stripe.py,sha256=Khe4zFf0kRzu65Yxnvq58gt1ljOztqJGdMDhVAiM7lM,24363
313
320
  nabu/thirdparty/tomopy_phase.py,sha256=hK4oPpkogLOhv23XzzEXQY2u3r8fJvASY_bINVs6ERE,8634
314
321
  nabu/thirdparty/tomwer_load_flats_darks.py,sha256=ZNoVAinUb_wGYbfvs_4BVnWsjsQmNxSvCh1bWhR2WWg,5611
315
- nabu-2025.1.0.dev14.dist-info/licenses/LICENSE,sha256=1eAIPSnEsnSFNUODnLtNtQTs76exG3ZxJ1DJR6zoUBA,1066
316
- nabu-2025.1.0.dev14.dist-info/METADATA,sha256=e9px--rVeYTmFlOJhZETMdJ8GtzN8Wy_s5VZELrLZD0,4327
317
- nabu-2025.1.0.dev14.dist-info/WHEEL,sha256=pxyMxgL8-pra_rKaQ4drOZAegBVuX-G_4nRHjjgWbmo,91
318
- nabu-2025.1.0.dev14.dist-info/entry_points.txt,sha256=cJKGkBeykVL7uK3E4R0RLRqMXifTL2qdO573syPAvJc,1288
319
- nabu-2025.1.0.dev14.dist-info/top_level.txt,sha256=fsm_N3eXLRZk2QXF9OSKPNDPFXOz8FAQjHh5avT3dok,9
320
- nabu-2025.1.0.dev14.dist-info/RECORD,,
322
+ nabu-2025.1.0rc2.dist-info/licenses/LICENSE,sha256=1eAIPSnEsnSFNUODnLtNtQTs76exG3ZxJ1DJR6zoUBA,1066
323
+ nabu-2025.1.0rc2.dist-info/METADATA,sha256=zqtkSzfnyFPWwbEJEZmBJggv2U3P7UZhgMJDWnzl5LE,4274
324
+ nabu-2025.1.0rc2.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
325
+ nabu-2025.1.0rc2.dist-info/entry_points.txt,sha256=YxzCY5CNQ1XHrIGbRKg-BgC1Jy7QaCITdITpyhhxpZU,1338
326
+ nabu-2025.1.0rc2.dist-info/top_level.txt,sha256=fsm_N3eXLRZk2QXF9OSKPNDPFXOz8FAQjHh5avT3dok,9
327
+ nabu-2025.1.0rc2.dist-info/RECORD,,
@@ -1,5 +1,5 @@
1
1
  Wheel-Version: 1.0
2
- Generator: setuptools (79.0.0)
2
+ Generator: setuptools (80.9.0)
3
3
  Root-Is-Purelib: true
4
4
  Tag: py3-none-any
5
5
 
@@ -8,12 +8,13 @@ nabu-diag2pix = nabu.app.diag_to_pix:main
8
8
  nabu-diag2rot = nabu.app.diag_to_rot:main
9
9
  nabu-display-timings = nabu.app.parse_reconstruction_log:parse_reclog_cli
10
10
  nabu-double-flatfield = nabu.app.double_flatfield:dff_cli
11
+ nabu-estimate-motion = nabu.app.estimate_motion:estimate_motion
11
12
  nabu-generate-info = nabu.app.generate_header:generate_merged_info_file
12
13
  nabu-helical = nabu.app.reconstruct_helical:main_helical
13
- nabu-helical-correct-rot = nabu.app.correct_rot:main
14
14
  nabu-helical-prepare-weights-double = nabu.app.prepare_weights_double:main
15
15
  nabu-histogram = nabu.app.histogram:histogram_cli
16
16
  nabu-multicor = nabu.app.multicor:main
17
+ nabu-pcaflats = nabu.app.pcaflats:main
17
18
  nabu-poly2map = nabu.app.create_distortion_map_from_poly:create_distortion_maps_entry_point
18
19
  nabu-reduce-dark-flat = nabu.app.reduce_dark_flat:main
19
20
  nabu-rotate = nabu.app.rotate:rotate_cli
nabu/app/correct_rot.py DELETED
@@ -1,62 +0,0 @@
1
- from .. import version
2
-
3
- import sys
4
- import numpy as np
5
-
6
-
7
- from .utils import parse_params_values
8
- from .cli_configs import CorrectRotConfig
9
- from silx.io.dictdump import h5todict
10
-
11
- from nxtomo.application.nxtomo import NXtomo
12
-
13
- from nabu.utils import DictToObj
14
-
15
-
16
- def main(user_args=None):
17
- """Applies the correction found by diag_to_rot to a nexus file"""
18
-
19
- if user_args is None:
20
- user_args = sys.argv[1:]
21
-
22
- args = DictToObj(
23
- parse_params_values(
24
- CorrectRotConfig,
25
- parser_description=main.__doc__,
26
- program_version="nabu " + version,
27
- user_args=user_args,
28
- )
29
- )
30
-
31
- # now we read the results of the diag_to_rot utility, they are in the cor_file parameter
32
- # of the cli
33
- cor_data = DictToObj(h5todict(args.cor_file, "/"))
34
-
35
- my_cor = cor_data.cor[0]
36
- # we will take my_cor as cor at the first angular position
37
- # and then we correct the x_translation at the other angles
38
-
39
- # We now load the nexus that we wish to correct
40
- nx_tomo = NXtomo().load(args.nexus_source, args.entry_name)
41
-
42
- # The cor_file that we use for correction
43
- # is providing us with the z_m that gives for each
44
- # cor position found in the cor array the corresponding value of
45
- # the translation along z (in meters)
46
- z_translation = nx_tomo.sample.z_translation.value
47
- z_translation = z_translation - z_translation[0]
48
-
49
- # now we interpolate to find the correction
50
- # for each position of the encoders
51
- cors = np.interp(z_translation, cor_data.z_m, cor_data.cor)
52
-
53
- # this is the correction
54
- x_correction = nx_tomo.instrument.detector.x_pixel_size.value * (cors - my_cor) # we are in meters here
55
-
56
- # and we apply it to the nexus that we have loaded
57
- nx_tomo.sample.x_translation = nx_tomo.sample.x_translation.value + x_correction
58
-
59
- # finally we write it to the corrected nexus file
60
- nx_tomo.save(file_path=args.nexus_target, data_path=args.entry_name, overwrite=True)
61
-
62
- return 0