nabu 2024.2.4__py3-none-any.whl → 2025.1.0.dev4__py3-none-any.whl

nabu-2025.1.0.dev4.dist-info/RECORD

@@ -0,0 +1,320 @@
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+nabu/stitching/tests/test_overlap.py,sha256=B_iT0pe9b9EJ77V59ilk-_Run6n5a1V9mTDuiPzqieg,7820
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+nabu/stitching/tests/test_slurm_utils.py,sha256=QTbtx5SRAK1JkbyI-GNSI5xeqVHI8KptD3STpOb09Pc,4951
+nabu/stitching/tests/test_utils.py,sha256=hIahPlogtnZNr_YkbN_Rcv-y6qG47IiRSSss51-cWK4,647
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+nabu/stitching/tests/test_z_preprocessing_stitching.py,sha256=UDka2f6_6ex2Zu4T5hJhjbt5jB19r16pnnfPLL6KiVM,16127
+nabu/stitching/utils/__init__.py,sha256=alIDGBnxWH4JvP-UW-7N99seBBi0r1GV1h8f1ERFBec,21
+nabu/stitching/utils/post_processing.py,sha256=aow36shbYhFgAnbCoq6mtXVpjBNCKm7VSLIvv3EYVdA,11303
+nabu/stitching/utils/utils.py,sha256=w92DtLj_cf5EfrE0lxtTaSWnWJi6eIC_O1-TR36590M,24574
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+nabu/stitching/utils/tests/test_post-processing.py,sha256=X79gYJ2dwF_bjFWVQLu9odHNJaMmljfuI1-ROIp7jdE,766
+nabu/thirdparty/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+nabu/thirdparty/algotom_convert_sino.py,sha256=iZVRilvyqMyLTu8RKgbqDFUjObWW5X69rCARrnNizuI,13872
+nabu/thirdparty/pore3d_deringer_munch.py,sha256=o4bisnFc-wMjuohWBT8wgWmfNehPQGtCl6G2NebJlbg,4500
+nabu/thirdparty/tomocupy_remove_stripe.py,sha256=Khe4zFf0kRzu65Yxnvq58gt1ljOztqJGdMDhVAiM7lM,24363
+nabu/thirdparty/tomopy_phase.py,sha256=hK4oPpkogLOhv23XzzEXQY2u3r8fJvASY_bINVs6ERE,8634
+nabu/thirdparty/tomwer_load_flats_darks.py,sha256=ZNoVAinUb_wGYbfvs_4BVnWsjsQmNxSvCh1bWhR2WWg,5611
+nabu-2025.1.0.dev4.dist-info/LICENSE,sha256=1eAIPSnEsnSFNUODnLtNtQTs76exG3ZxJ1DJR6zoUBA,1066
+nabu-2025.1.0.dev4.dist-info/METADATA,sha256=0Qg0LEOMdgLG7OSFJFOSUqhcj5VVR105UfZBwA4GdMk,5516
+nabu-2025.1.0.dev4.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
+nabu-2025.1.0.dev4.dist-info/entry_points.txt,sha256=cJKGkBeykVL7uK3E4R0RLRqMXifTL2qdO573syPAvJc,1288
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+nabu-2025.1.0.dev4.dist-info/RECORD,,

{nabu-2024.2.4.dist-info → nabu-2025.1.0.dev4.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.41.1)
+Generator: setuptools (75.8.0)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

nabu/io/tests/test_detector_distortion.py

@@ -1,178 +0,0 @@
-import pytest
-import numpy as np
-import scipy.ndimage
-from scipy import sparse
-from nabu.io.detector_distortion import DetectorDistortionBase
-from nabu.processing.rotation import Rotation, __have__skimage__
-
-if __have__skimage__:
-    import skimage
-
-
-@pytest.mark.skipif(not (__have__skimage__), reason="Need scikit-image for rotation")
-def test_detector_distortion():
-    image = scipy.ndimage.gaussian_filter(np.random.random([379, 1357]), 3.0)
-    center_xz = ((image.shape[1] - 1) / 2, (image.shape[0] - 1) / 2)
-
-    part_to_be_retrieved = image[100:279]
-
-    rotated_image = skimage.transform.rotate(image, angle=5.0, center=center_xz[::])
-
-    corrector = DetectorDistortionRotation(detector_full_shape_vh=image.shape, center_xz=center_xz, angle_deg=-5.0)
-    start_x, end_x, start_z, end_z = corrector.set_sub_region_transformation(
-        target_sub_region=(
-            None,
-            None,
-            100,
-            279,
-        )
-    )
-
-    source = rotated_image[start_z:end_z, start_x:end_x]
-
-    retrieved = corrector.transform(source)
-
-    diff = (retrieved - part_to_be_retrieved)[:, 20:-20]
-
-    assert abs(diff).std() < 1e-3
-
-
-class DetectorDistortionRotation(DetectorDistortionBase):
-    """ """
-
-    def __init__(self, detector_full_shape_vh=(0, 0), center_xz=(0, 0), angle_deg=0.0):
-        """This is the basis class.
-        A simple identity transformation which has the only merit to show
-        how it works.Reimplement this function to have more parameters for other
-        transformations
-        """
-        self._build_full_transformation(detector_full_shape_vh, center_xz, angle_deg)
-
-    def _build_full_transformation(self, detector_full_shape_vh, center_xz, angle_deg):
-        """A simple identity.
-        Reimplement this function to have more parameters for other
-        transformations
-        """
-
-        indices = np.indices(detector_full_shape_vh)
-        center_x, center_z = center_xz
-        coordinates = (indices.T - np.array([center_z, center_x])).T
-
-        c = np.cos(np.deg2rad(angle_deg))
-        s = np.sin(np.deg2rad(angle_deg))
-
-        rot_mat = np.array([[c, s], [-s, c]])
-
-        coordinates = np.tensordot(rot_mat, coordinates, axes=[1, 0])
-
-        # padding
-        sz, sx = detector_full_shape_vh
-        total_detector_npixs = sz * sx
-        xs = np.clip(np.array(coordinates[1].flat) + center_x, [[0]], [[sx - 1]])
-        zs = np.clip(np.array(coordinates[0].flat) + center_z, [[0]], [[sz - 1]])
-
-        ix0s = np.floor(xs)
-        ix1s = np.ceil(xs)
-        fx = xs - ix0s
-
-        iz0s = np.floor(zs)
-        iz1s = np.ceil(zs)
-        fz = zs - iz0s
-
-        I_tmp = np.empty([4 * sz * sx], np.int64)
-        J_tmp = np.empty([4 * sz * sx], np.int64)
-        V_tmp = np.ones([4 * sz * sx], "f")
-
-        I_tmp[:] = np.arange(sz * sx * 4) // 4
-
-        J_tmp[0::4] = iz0s * sx + ix0s
-        J_tmp[1::4] = iz0s * sx + ix1s
-        J_tmp[2::4] = iz1s * sx + ix0s
-        J_tmp[3::4] = iz1s * sx + ix1s
-
-        V_tmp[0::4] = (1 - fz) * (1 - fx)
-        V_tmp[1::4] = (1 - fz) * fx
-        V_tmp[2::4] = fz * (1 - fx)
-        V_tmp[3::4] = fz * fx
-
-        self.detector_full_shape_vh = detector_full_shape_vh
-
-        coo_tmp = sparse.coo_matrix((V_tmp.astype("f"), (I_tmp, J_tmp)), shape=(sz * sx, sz * sx))
-
-        csr_tmp = coo_tmp.tocsr()
-
-        self.full_csr_data = csr_tmp.data
-        self.full_csr_indices = csr_tmp.indices
-        self.full_csr_indptr = csr_tmp.indptr
-
-        ## This will be used to save time if the same sub_region argument is requested several time in a row
-        self._status = None
-
-    def _set_sub_region_transformation(
-        self,
-        target_sub_region=(
-            (
-                None,
-                None,
-                0,
-                0,
-            ),
-        ),
-    ):
-        (x_start, x_end, z_start, z_end) = target_sub_region
-
-        if z_start is None:
-            z_start = 0
-        if z_end is None:
-            z_end = self.detector_full_shape_vh[0]
-
-        if (x_start, x_end) not in [(None, None), (0, None), (0, self.detector_full_shape_vh[1])]:
-            message = f""" In the base class DetectorDistortionRotation only vertical slicing is accepted.
-            The sub_region contained (x_start, x_end)={(x_start, x_end)} which would slice the 
-            full horizontal size which is {self.detector_full_shape_vh[1]}
-            """
-            raise ValueError()
-
-        x_start, x_end = 0, self.detector_full_shape_vh[1]
-
-        row_ptr_start = z_start * self.detector_full_shape_vh[1]
-        row_ptr_end = z_end * self.detector_full_shape_vh[1]
-
-        indices_start = self.full_csr_indptr[row_ptr_start]
-        indices_end = self.full_csr_indptr[row_ptr_end]
-
-        data_tmp = self.full_csr_data[indices_start:indices_end]
-
-        target_offset = self.full_csr_indptr[row_ptr_start]
-        indptr_tmp = self.full_csr_indptr[row_ptr_start : row_ptr_end + 1] - target_offset
-
-        indices_tmp = self.full_csr_indices[indices_start:indices_end]
-
-        iz_source = (indices_tmp) // self.detector_full_shape_vh[1]
-
-        z_start_source = iz_source.min()
-        z_end_source = iz_source.max() + 1
-        source_offset = z_start_source * self.detector_full_shape_vh[1]
-        indices_tmp = indices_tmp - source_offset
-
-        target_size = (z_end - z_start) * self.detector_full_shape_vh[1]
-        source_size = (z_end_source - z_start_source) * self.detector_full_shape_vh[1]
-
-        self.transformation_matrix = sparse.csr_matrix(
-            (data_tmp, indices_tmp, indptr_tmp), shape=(target_size, source_size)
-        )
-
-        self.target_shape = ((z_end - z_start), self.detector_full_shape_vh[1])
-
-        ## For the identity matrix the source and the target have the same size.
-        ## The two following lines are trivial.
-        ## For this identity transformation only the slicing of the appropriate part
-        ## of the identity sparse matrix is slightly laborious.
-        ## Practical case will be more complicated and source_sub_region
-        ## will be in general larger than the target_sub_region
-        self._status = {
-            "target_sub_region": ((x_start, x_end, z_start, z_end)),
-            "source_sub_region": ((x_start, x_end, z_start_source, z_end_source)),
-        }
-
-        return self._status["source_sub_region"]

nabu/resources/tests/test_extract.py

@@ -1,9 +0,0 @@
-from nabu.utils import list_match_queries
-
-
-def test_list_match_queries():
-
-    # entry0000 .... entry0099
-    avail = ["entry%04d" % i for i in range(100)]
-    query = "entry0000"
-    list_match_queries()