nabu 2024.1.9__py3-none-any.whl → 2024.2.0__py3-none-any.whl

{nabu-2024.1.9.dist-info → nabu-2024.2.0.dist-info}/RECORD

@@ -1,56 +1,58 @@
 doc/conf.py,sha256=3xtCarCHrXPr50GbeRDuH-o3Jzojw7mpr7vpGfZPLAE,3787
 doc/create_conf_doc.py,sha256=IVOdP70KvbW9WS_UQu3Iyd0YfS60E2fJ5IDtQ_s4cDw,1143
 doc/get_mathjax.py,sha256=VIvKRCdDuF2VoY8JD3mSey9XX13AZMmwTJBHdt1tUs4,1012
-nabu/__init__.py,sha256=hocwYzVbHilZVlwb2HfL232A1uxBLouRbjQWv0nq_Ng,270
+nabu/__init__.py,sha256=BeM4pgh4eRU9T-E4ydnqad2Eo39KlEKYGhhvBOzjjGM,270
 nabu/tests.py,sha256=cew9OY2uTyncHI_HM32W8CP6B1GTGKaOW65XtMEqs7o,1417
-nabu/testutils.py,sha256=qqtGgkIhpOpXhgeoXlqCb91Rx-JlI4ALaDF6nt8YRRk,13298
-nabu/utils.py,sha256=w-xfRb6TFQpS-tao6nlvfmr962pmeec-WH1GltSUCrk,23767
+nabu/testutils.py,sha256=VkSL9tbY0XEH49Z5OjDFFhzkSxrCv4UIuvSVFgegSUY,7632
+nabu/utils.py,sha256=V1B_sD54XGNKn5pORa2yNCATyswOzybey3sv8BuIYWY,26355
 nabu/app/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-nabu/app/bootstrap.py,sha256=UQZzCBKtSXtQp5U0aXtlUhbjbwzgILTI4zD4zVffhBI,3246
+nabu/app/bootstrap.py,sha256=3yLZJmrmQBmPJMBtE2ih2cspfqOy5T_UN2U8B3i_hkI,3266
 nabu/app/bootstrap_stitching.py,sha256=Inr0_zRAtyeMTK1BKxGqoDf-Na0O33CICmQJYja06ug,2148
-nabu/app/cast_volume.py,sha256=oObZVX-UbhsQ-JbNqpG1SdOSeJwIBrALYsJ9PubPWXc,11217
-nabu/app/cli_configs.py,sha256=FBh9bG80oY0fwfOntmgqgumS5i120_r60tCsj_mcdvE,22109
+nabu/app/cast_volume.py,sha256=mjINEIFrh2BVC8mPFO0cnzlFUOS3x5aqjFPGKsb3H-c,11264
+nabu/app/cli_configs.py,sha256=frcKu4Pp6380Gf2j0loP8OYqVRlTcjlLQBHe1mGJR_A,22254
 nabu/app/compare_volumes.py,sha256=Mu5O4uP-ANo-el-fE5PLvEq42BTk5FkrscaFRyQZdis,3341
-nabu/app/composite_cor.py,sha256=N0Q7dxak7GktcuwxtwQ0PdZcmCS5CboChlxa2UCLMIA,5132
+nabu/app/composite_cor.py,sha256=TjYiAtmY4o9lwNpkIEueTTNli72QN6jtR_zbtCeOJz4,5138
 nabu/app/correct_rot.py,sha256=K0UQz4l5caFvsSr1-1y5hZvt6e45NAH3qYOhzHm2mGc,2130
-nabu/app/create_distortion_map_from_poly.py,sha256=5knKx0VLyj-s1ObGwQWlh_ml_Uz4J8jvVBsU9EypLOw,6199
-nabu/app/diag_to_pix.py,sha256=iSB9gJ5t45Rf025a0yx3Wom9yYRIlvsO8yPvSv5R6MY,15217
-nabu/app/diag_to_rot.py,sha256=86lqINSN4SoQ0Eqf0fGYCw-eAhBHm8ds7TDWtLNE6Cg,17111
-nabu/app/double_flatfield.py,sha256=zm9oHWR_QgAV2B3SeNWwgxpJtBsnnWUW4O2lCn5Hjbc,5450
+nabu/app/create_distortion_map_from_poly.py,sha256=aa-vE-ndB9PsuHwdHUW7-8jGz4BxvjC-bQDWHlPV0Kg,6193
+nabu/app/diag_to_pix.py,sha256=b7vpq2zzfJJerIDATsLj_VszZRDnIFE-73EI47ORRoo,15062
+nabu/app/diag_to_rot.py,sha256=x3IcXIa7FXxNvweSZylwi8nEe3Kwz7pkRSMjVNBKVIg,16972
+nabu/app/double_flatfield.py,sha256=6ko_ZJomtwWVHs1pchWy7Pa5_rCO12NyUmyptKarEd0,5420
 nabu/app/generate_header.py,sha256=Voo-FAvwS_mU5gtDxyqpZnSpP_mlMSfd_6bEtgdi_tg,8919
 nabu/app/histogram.py,sha256=gyLXKwFrU5WPQMkM1k8OdpIXSwGEEKC-f8RcTHKOho4,7930
 nabu/app/multicor.py,sha256=h2ykS6Vg3S88E_pZOQu_s7F1VYGv-q7k1nfqxf2IdOM,4055
 nabu/app/nx_z_splitter.py,sha256=p54jR-PAAw-AkGolM9fZE5lM2vbNLspCNCy5zBnJNP4,4976
-nabu/app/parse_reconstruction_log.py,sha256=9eiJftCkyNvtZmTDjeOuKgu3a9Fe4KzJcfcI_ZdDlUM,4586
+nabu/app/parse_reconstruction_log.py,sha256=iVhPnOSDH059jpf9M7LIy2LXgLKmG5U9sQT-3dgXkms,4732
 nabu/app/prepare_weights_double.py,sha256=5TkhTwNbvgeG8jlDLCwlkeOV_YMINySwdpmjaTM6pbk,5495
-nabu/app/reconstruct.py,sha256=Lt3Qu11p_eaq4U6tMfQOw-gRSfGhgFwPms2LkjbZaWY,3968
-nabu/app/reconstruct_helical.py,sha256=odjjCtq12vV_oGIpcK_P00nmH8YlFtq0_r28eBb-O_0,4454
+nabu/app/reconstruct.py,sha256=L5N6BnP8lUQbXGi4NtcAZQ7h-T8CbyiBBP6s1SlPqrg,5792
+nabu/app/reconstruct_helical.py,sha256=p12vKWLSsw6FyGUUZAOYDqFwlvvpprxi6YSe7EwpIvo,4450
 nabu/app/reduce_dark_flat.py,sha256=fkUuVEgU54m9IeoJSHBL9hZ9iyHIOMYO8QjAZIZcXq4,6586
 nabu/app/rotate.py,sha256=Rj8W7UDZHS4FLgMsGq4xvHfOujWJsyVexn-NOg3Gja0,6445
 nabu/app/shrink_dataset.py,sha256=P9dorO0Q-gPAWgSHyZi3XQp4jkMTJacDYzNvJY4oh98,3507
-nabu/app/stitching.py,sha256=Ibp1oVokLVMz-VX762j1C0E88Di0YJvRt-b8NjGoe7g,3310
+nabu/app/stitching.py,sha256=T5nQVp7D6jNg86vMi8BCQANJJsKstvwItJWZDs05t64,4194
 nabu/app/utils.py,sha256=XUBRWDmth4i3BZHd27rfarFAUP7OEcsMeVmDJ6T4EXA,1178
 nabu/app/validator.py,sha256=IR-DcUV5h1Fc5CChBfBIaglrGpfKNICX7tGirAroMiw,3368
 nabu/app/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-nabu/app/tests/test_reduce_dark_flat.py,sha256=T-_zyzD0-f2c5Z-tlzmRF5p3vPtyL2RFb-D5fIYYEoM,2641
+nabu/app/tests/test_reduce_dark_flat.py,sha256=qD52JL6fgJh7UEeGLssmsmGkqPTL8YTu29Hj1Nk9Bjg,2725
 nabu/cuda/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 nabu/cuda/convolution.py,sha256=n8KsJ7IZdPOs_K5QZC6qblnOvIKYwxtdt03oNa0GiMU,241
 nabu/cuda/fft.py,sha256=FaLlZZWS3N32O6Lt7MioNTLNTyD1KwVSAVYyUYuIe9o,194
-nabu/cuda/kernel.py,sha256=jTTrjb6jwWUEk5NJJNs_BoNjpRiknhYRApZuA58vJis,3381
+nabu/cuda/kernel.py,sha256=8v0b9kGNZfTPt2-xRbwrwX363Tw38B0TvsvmtmEtcrw,3776
 nabu/cuda/medfilt.py,sha256=4pFzE-JR1RufxfsgViewRTlh_a-YrTZikx-qvTZ2yUs,216
 nabu/cuda/padding.py,sha256=DdexJvSuQPk9Svqlk1xZUfJBjs_Ru9E4kF-0Q7RPEyM,216
-nabu/cuda/processing.py,sha256=07wCxP6YkBpS_UvEIu6dsXvhaINY06peNdkKZrcIcls,2605
-nabu/cuda/utils.py,sha256=27zlJrxG6vLnbTSY-N8MDwL3m12zi9WqbavU8ZDnV3s,9741
+nabu/cuda/processing.py,sha256=nefntcARa917yirZqe5c90yPXua_sGzVUtg6Fzc2Vu8,2655
+nabu/cuda/utils.py,sha256=vk57ET23BoKb3ZoOQuVc3eQO_sGbFwA9XgMV5JC13QQ,9646
 nabu/cuda/src/ElementOp.cu,sha256=PhebQQgeF0V7MDNzeYiRXIeNq3tE2PsBx00XhanBmvg,7188
 nabu/cuda/src/backproj.cu,sha256=Zq9w8TP9zSYCHH_91dfrTVLOSEmY0y4hzm7J2qdCdJ8,6257
 nabu/cuda/src/backproj_polar.cu,sha256=sZbtw3KMfN69XyubJQSSLC87d5IPOyzbPBoRSNC1Cek,1851
 nabu/cuda/src/boundary.h,sha256=eQhfKZm-o0kj88BvkUwzqfqxYfRde4Tuj8AhQvRK16Y,2898
+nabu/cuda/src/cone.cu,sha256=Q-mKNBnx0pXzpOUGKi0Kq4POp7VqaQrLCDgqTf1pdkk,3071
 nabu/cuda/src/convolution.cu,sha256=O6r8qPpQjpaqnNivMRX0LK3dEACKk9xyNYO9u_JysU0,7353
 nabu/cuda/src/dfi_fftshift.cu,sha256=ElgNXy8H14mff2hmyjxCq7CnFK_DSY2Z564QGytRO1o,2220
 nabu/cuda/src/flatfield.cu,sha256=ZVVmEd-jcsK03VWv42uugYw6LeUnDEVY8qo_G07doHs,2058
 nabu/cuda/src/fourier_wavelets.cu,sha256=571gDOFLy4cMKOockPZIxCJKcFWJwDYT8FdWjQJHEWE,547
 nabu/cuda/src/halftomo.cu,sha256=agqNiL4gvY0S57_d0Xa7rvjXI5teOOXF9XHK1IA-aDQ,2902
 nabu/cuda/src/helical_padding.cu,sha256=87Ia2jDWzA_1ZSmE-v1yBqccIrIvF5Op6Nbmyvk31Ww,3955
+nabu/cuda/src/hierarchical_backproj.cu,sha256=NikMrAFuL6qBQdmKUgMxB3YCJG-BibdBf3mOc-rkrCQ,8833
 nabu/cuda/src/histogram.cu,sha256=bVdVA5GfT0-asMjmWk8r39a7W2jmjL-YVz60LUyvqiQ,808
 nabu/cuda/src/interpolation.cu,sha256=Q4TjDklZToSjk9yCd4Rq97kQlhSAgFer7Pf4PUo4jYU,839
 nabu/cuda/src/medfilt.cu,sha256=fyuuOEHxQFfQoDjyXr_BdNRHIUBN7e6T66kvW4OQI7A,2449
@@ -61,32 +63,32 @@ nabu/cuda/src/rotation.cu,sha256=inatw44lT0Qn4D2xguLi_YZsjzP96zfGGLiCc9vLhQw,657
 nabu/cuda/src/transpose.cu,sha256=Enim7vLxTCFZbK3BmYdQ6ZatA_FLp6601VOSl8iGFjg,476
 nabu/cuda/tests/__init__.py,sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs,1
 nabu/estimation/__init__.py,sha256=HWE3ivArjlJx4FjFh2Q73VmpIyzod80KTmXvFo1AP1s,379
-nabu/estimation/alignment.py,sha256=bG5eskq-bGOdyRpxZ1t-udbcwKOvHUn6C4HmUrNOX9c,21584
-nabu/estimation/cor.py,sha256=pBEYWOo1cNszNgVZrWXWBjc4xr6bp7al8-WoToEHpS4,68104
-nabu/estimation/cor_sino.py,sha256=xbTD-F3eemUuvsyV6dmJOTxSOL-KI15-JNPMC3S9ZAU,6394
+nabu/estimation/alignment.py,sha256=DWe4PBLsAOt95m_UEinVXUhXyYDmV0NOHW-oHpVEjVk,21185
+nabu/estimation/cor.py,sha256=HcE0xw0ECSkx_kG30taw964rWZwh6lfgg8m9wnKdXik,50415
+nabu/estimation/cor_sino.py,sha256=Wh0t8Ak6h8kf3rn5azD1XqD4e0Xa90oZUy90n9Ory8c,19116
 nabu/estimation/distortion.py,sha256=DEXizQpgHBXmrhbQ0kuEchicxmiDgmU2qrh8bCgSezg,4701
-nabu/estimation/focus.py,sha256=5Ot97-SfhdoaZaske3J_ZdPLIPGswovmGxmPM6ir2BU,15765
-nabu/estimation/tilt.py,sha256=8xdNvJkA4rKLBSaGMq6ldR-Azoa1o6WlQ6lO5PuIGGk,8647
+nabu/estimation/focus.py,sha256=I2B5ODmGToE0-Y-B_6v1zJv7XcWdkXPZzrs2uYpiPlc,18029
+nabu/estimation/tilt.py,sha256=AaBBOzM2bVlScphCdORbfEi_mJjyuwkYvvDmr2Fosvg,8723
 nabu/estimation/translation.py,sha256=L-SCLozW1I-FyGta9LjbNPLYRnaznwenF-p9rISM2pE,8581
-nabu/estimation/utils.py,sha256=m1dYxyU1uSmyjRkPDhfXFzZ_o2mw8X2ApmvCC1MsvlQ,1401
+nabu/estimation/utils.py,sha256=31d17Ng__NxcLOtGXPmbPPW1veh1m0poCvRgDCJssUA,347
 nabu/estimation/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 nabu/estimation/tests/test_alignment.py,sha256=odDbSXGPZz-aqCkPfFrZqqMp4NDz-4Sju87vWrOdA30,2491
-nabu/estimation/tests/test_cor.py,sha256=TND-fGoupHQFhp-omp6SQFETxZAaL0WyjC5JZNzCvmI,21268
-nabu/estimation/tests/test_focus.py,sha256=deaVGbIFSzHDAReoeAy-1HLsnKWpJQsC2SL9WTWEV6o,4170
+nabu/estimation/tests/test_cor.py,sha256=YKrZc1v33WBcNEOTmzoifnotghgvUL8-78B0IxCmjCs,23811
+nabu/estimation/tests/test_focus.py,sha256=cMxEeTLlfVHOvG_4oGMLpp6bVI6okYz0u4aNcW0vmNI,4188
 nabu/estimation/tests/test_tilt.py,sha256=PN4tnV3-XU2nNA608kQShaHugWn_-wbHzWCTnLIaCTk,1658
 nabu/estimation/tests/test_translation.py,sha256=RkOnCYgk9DZGKlIka1snqTv4wbIz_nG7-EHAxnBHsJU,2999
-nabu/io/__init__.py,sha256=Mx0HRIENk0dJbN3b9tzPZhiOnPMxBItgVNQn_QLLrlI,176
-nabu/io/cast_volume.py,sha256=fgqbabNHM1H2JKiUJR1kBrcIh9kBY7HpCmLTWbcCvvU,16712
+nabu/io/__init__.py,sha256=AbQgj4-fCCHOKynO_PyAR9ejnFSuWKgroxxhxWVpjyQ,120
+nabu/io/cast_volume.py,sha256=gYsqHGdeiuTlOBCb9B7koRZ_bO0IQnN-XrzsSvR1s_I,16737
 nabu/io/detector_distortion.py,sha256=Or4icugi0fGRKWIG0I9hCuR1UZA5Cel25ZGY7cR2j4I,11744
-nabu/io/reader.py,sha256=1DlUYObfOBEGYJHEqyw1Mb2uQ_b_Z7-FFqMWS-4tIB0,23083
+nabu/io/reader.py,sha256=ZrDlpJe4qn5mxGBccJi-C2hTganvuUnmbIwYkyE1Y_E,40517
 nabu/io/reader_helical.py,sha256=_6vZBH-US_VT7oOGJUtYXqPwFws7xZKcmdOthpwvlIQ,4477
-nabu/io/tiffwriter_zmm.py,sha256=ykaSFqdbYhGNxdBrJRT_rxihx5wj9G8qMQMI1e07fNk,3838
 nabu/io/utils.py,sha256=pFRULSlmGzJnzBbeSNKRhnKbBPbV0XaeUsxnWmnMtR4,9223
-nabu/io/writer.py,sha256=cWKY7RcNUztOs1ktzLP2G087fLvq4yNMNdvvBdnoOSk,31417
+nabu/io/writer.py,sha256=01S1nz6u3QxE-nGR6lcVuLEGYSZLNaKModvTaD4bLv8,15895
 nabu/io/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 nabu/io/tests/test_cast_volume.py,sha256=WCDStfV_eu4tjeKibWXrXEDbN0hPJGOzacGv6efgHAI,10743
 nabu/io/tests/test_detector_distortion.py,sha256=-l-fl_RmSoZHl9aDoHDoJE13L8w9ghBXGASc9PYGzqw,6341
-nabu/io/tests/test_writers.py,sha256=PjHRI8euuRnejwE_LNMSdwqUq18V0V3VJwmRhi8xvyk,7188
+nabu/io/tests/test_readers.py,sha256=jH7txPj6_ik7uu3mcm57pCmQHvGeGiS1fTy5KwheC3E,18098
+nabu/io/tests/test_writers.py,sha256=WqpmDF-td0_beN5ScoRRRliUN8ua_TvRxVWwvvoN6Es,3141
 nabu/misc/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 nabu/misc/binning.py,sha256=x7mbKTfEKF8ZaZoPq2LJl9hfUsQ0qMNGMxaHE98PcNc,2920
 nabu/misc/fftshift.py,sha256=TF0RwlDqo_umTwBQb2juCA8Hrff4H20XULdcIyDTajI,205
@@ -110,10 +112,10 @@ nabu/misc/tests/test_binning.py,sha256=0TqnJrDhfqSeWF6ZJsMqFUQ0M2SJ1AHPpD1sWA0hB
 nabu/misc/tests/test_interpolation.py,sha256=H8ZJ7dppCcpxVa9wOBkJ9U0mymH5lGyCJ0LZCYIK8PE,2389
 nabu/opencl/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 nabu/opencl/fft.py,sha256=-3Ao5Ug4_pEzIliQsBiGJc_PgyURPd8pRje8LWx51pU,208
-nabu/opencl/kernel.py,sha256=C48xhgxhIkI-0j5CODJJTw-rdjjy8FiyQSJ0YuoYH5c,4736
+nabu/opencl/kernel.py,sha256=lmHRgWqpEbQUOunZe0xFuuw_Z_K6dq8BxjH3FLReVBU,5125
 nabu/opencl/memcpy.py,sha256=s_0CCO-PTDmEsCW9_kVCNHwN7_hw7uNy_O6KJ0zS71I,1263
 nabu/opencl/padding.py,sha256=fe7AZ1VtQJ4F7zq31FjXSYQnleAubWwpEYTCxdZNcSI,224
-nabu/opencl/processing.py,sha256=7JBZUpPoHMJVI4TEpk1YDn1lLjy0f6XU0qR-PFNfkwA,2122
+nabu/opencl/processing.py,sha256=cKq_VLtLBPijp2pl7Zgc4mrVsYLUA27x26jPo484Kg4,2416
 nabu/opencl/utils.py,sha256=yPAt7xQ15n98Gf_ZSkazKUathZBe3WzD47TE-l0cjzs,10141
 nabu/opencl/src/ElementOp.cl,sha256=RMScHhHYDa6xXC4NLJrC1KpDRq-aMZG1lwq3O9pStiY,1258
 nabu/opencl/src/backproj.cl,sha256=M226iOQ-0WhGsJZfUn3mUCfBHqqGAqWa2caK9Igk058,5559
@@ -125,94 +127,90 @@ nabu/opencl/src/transpose.cl,sha256=jFRIFccPefzbKFEqEIVYGrWac5XJs3FY1tEmvCzA74E,
 nabu/opencl/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 nabu/pipeline/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 nabu/pipeline/config.py,sha256=amc05PX0kZA5wHjD1oFP59MfW4pBA-gjBypy4tKLnv0,9221
-nabu/pipeline/config_validators.py,sha256=rvK1Q_KmA1LUeNTefNxXCpYfDQ1zAdk1kFePrLintwc,16300
-nabu/pipeline/datadump.py,sha256=Ua4tbzxfGMOiT2-7WZn3IDiJqzzK-TyFuku_XUkH8_Q,6520
+nabu/pipeline/config_validators.py,sha256=ocAKB26iRjm5qs1Ay4B_rgGcg8aZjAP34XpEZReYQ8A,16353
+nabu/pipeline/datadump.py,sha256=lK36YlsVSeE4fdkD7cgVCl4RKn-Wa9KYgOw4DNtH8Ow,6982
 nabu/pipeline/dataset_validator.py,sha256=etQw9NC_YGsdWCgjsn8aJ3WfvcRuJlLVZlWoqhvvo-8,9263
 nabu/pipeline/detector_distortion_provider.py,sha256=ru1AxbcuO-FA8FYooPBWgp1lzdSDUtzFUC1A_sS8jME,920
-nabu/pipeline/estimators.py,sha256=4V5pwl5vUFMJDanWnmw7POnSsa9lKyKtUzvq9GLcJwc,41374
-nabu/pipeline/fallback_utils.py,sha256=7ccrKYE-rp3fydb72VA6W0_eKcEoqYBEAPlmij_lyEc,6086
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@@ -223,74 +221,99 @@ nabu/processing/tests/test_rotation.py,sha256=vedRXV9RePJywBKoyBkGANP1dhZCjphbYO
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nabu/io/tiffwriter_zmm.py

@@ -1,99 +0,0 @@
-from . import *
-from .writer import TIFFWriter as StandardTIFFWriter
-from os import path
-from tifffile import TiffWriter
-import numpy as np
-
-
-class TIFFWriter(StandardTIFFWriter):  # pylint: disable=E0102
-    def __init__(
-        self,
-        fname,
-        multiframe=False,
-        start_index=0,
-        heights_above_stage_mm=None,
-        filemode=None,
-        append=False,
-        big_tiff=None,
-    ):
-        """
-        Tiff writer.
-
-        Parameters
-        -----------
-        fname: str
-            Path to the output file name
-        multiframe: bool, optional
-            Whether to write all data in one single file. Default is False.
-        start_index: int, optional
-            When writing a stack of images, each image is written in a dedicated file
-            (unless multiframe is set to True).
-            In this case, the output is a series of files `filename_0000.tif`,
-            `filename_0001.tif`, etc. This parameter is the starting index for
-            file names.
-            This option is ignored when multiframe is True.
-        heights_above_stage_mm: None or a list of heights
-            if this parameters is given, the file names will be indexed with the height
-        filemode: str, optional
-            DEPRECATED. Will be ignored. Please refer to 'append'
-        append: bool, optional
-            Whether to append data to the file rather than overwriting. Default is False.
-        big_tiff: bool, optional
-            Whether to write in "big tiff" format: https://www.awaresystems.be/imaging/tiff/bigtiff.html
-            Default is True when multiframe is True.
-            Note that default "standard" tiff cannot exceed 4 GB.
-
-        Notes
-        ------
-        If multiframe is False (default), then each image will be written in a
-        dedicated tiff file.
-        """
-        super().__init__(
-            fname, multiframe=multiframe, start_index=start_index, filemode=filemode, append=append, big_tiff=big_tiff
-        )
-        self.heights_above_stage_mm = heights_above_stage_mm
-
-    def _write_tiff(self, data, config=None, filename=None):
-        # TODO metadata
-        filename = filename or self.fname
-        with TiffWriter(filename, bigtiff=self.big_tiff, append=self.append) as tif:
-            tif.write(data)
-
-    def write(self, data, *args, config=None, **kwargs):
-        # Single image, or multiple image in the same file
-        if self.multiframe:
-            self._write_tiff(data, config=config)
-        # Multiple image, one file per image
-        else:
-            if len(data.shape) == 2:
-                data = np.array([data])
-            dirname, rel_filename = path.split(self.fname)
-            prefix, ext = path.splitext(rel_filename)
-            for i in range(data.shape[0]):
-                if self.heights_above_stage_mm is None:
-                    curr_rel_filename = prefix + str("_%06d" % (self.start_index + i)) + ext
-                else:
-                    value_mm = self.heights_above_stage_mm[i]
-                    if value_mm < 0:
-                        sign = "-"
-                        value_mm = -value_mm
-                    else:
-                        sign = ""
-
-                    part_mm = int(value_mm)
-                    rest_um = (value_mm - part_mm) * 1000
-                    part_um = int(rest_um)
-                    rest_nm = (rest_um - part_um) * 10
-                    part_nm = int(rest_nm)
-
-                    curr_rel_filename = prefix + "_{}{:04d}p{:03d}{:1d}".format(sign, part_mm, part_um, part_nm) + ext
-
-                fname = path.join(dirname, curr_rel_filename)
-
-                self._write_tiff(data[i], filename=fname, config=None)
-
-    def get_filename(self):
-        if self.multiframe:
-            return self.fname
-        else:
-            return path.dirname(self.fname)