naas-abi 1.0.7__py3-none-any.whl → 1.0.9__py3-none-any.whl

naas_abi/workflows/CreateClassOntologyYamlWorkflow.py

@@ -1,214 +0,0 @@
-from dataclasses import dataclass
-from enum import Enum
-from typing import Annotated, Any, Union
-
-from langchain_core.tools import BaseTool, StructuredTool
-from naas_abi.workflows.ConvertOntologyGraphToYamlWorkflow import (
-    ConvertOntologyGraphToYamlWorkflow,
-    ConvertOntologyGraphToYamlWorkflowConfiguration,
-    ConvertOntologyGraphToYamlWorkflowParameters,
-)
-from naas_abi_core import logger, services
-from naas_abi_core.services.triple_store.TripleStorePorts import (
-    ITripleStoreService,
-    OntologyEvent,
-)
-from naas_abi_core.utils.Expose import APIRouter
-from naas_abi_core.utils.SPARQL import (
-    get_class_uri_from_individual_uri,
-    results_to_list,
-)
-from naas_abi_core.workflow import Workflow, WorkflowConfiguration
-from naas_abi_core.workflow.workflow import WorkflowParameters
-from pydantic import Field
-from rdflib import OWL, RDF, RDFS, Graph, Literal, URIRef
-
-
-@dataclass
-class CreateClassOntologyYamlWorkflowConfiguration(WorkflowConfiguration):
-    """Configuration for CreateOntologyYAML workflow.
-
-    Attributes:
-        naas_integration_config (NaasIntegrationConfiguration): Configuration for the Naas integration
-    """
-
-    triple_store: ITripleStoreService
-    convert_ontology_graph_config: ConvertOntologyGraphToYamlWorkflowConfiguration
-
-
-class CreateClassOntologyYamlWorkflowParameters(WorkflowParameters):
-    """Parameters for CreateOntologyYAML workflow execution.
-
-    Attributes:
-        ontology_name (str): The name of the ontology store to use
-        label (str): The label of the ontology
-        description (str): The description of the ontology
-        logo_url (str): The URL of the ontology logo
-        level (str): The level of the ontology (e.g., 'TOP_LEVEL', 'MID_LEVEL', 'DOMAIN', 'USE_CASE')
-        display_relations_names (bool): Whether to display relation names in the visualization
-    """
-
-    class_uri: Annotated[
-        str, Field(..., description="The URI of the class to convert to YAML")
-    ]
-
-
-class CreateClassOntologyYamlWorkflow(Workflow):
-    """Workflow for converting ontology files to YAML and pushing them to a Naas workspace."""
-
-    __configuration: CreateClassOntologyYamlWorkflowConfiguration
-
-    def __init__(self, configuration: CreateClassOntologyYamlWorkflowConfiguration):
-        self.__configuration = configuration
-        self.__convert_ontology_graph_workflow = ConvertOntologyGraphToYamlWorkflow(
-            self.__configuration.convert_ontology_graph_config
-        )
-
-    def trigger(
-        self, event: OntologyEvent, triple: tuple[Any, Any, Any]
-    ) -> Union[str, None]:
-        s, p, o = triple
-        # logger.debug(f"==> Triggering Create Class Ontology YAML Workflow: {s} {p} {o}")
-        if (
-            str(event) != str(OntologyEvent.INSERT)
-            or not str(o).startswith("http")
-            or str(o) == "http://www.w3.org/2002/07/owl#NamedIndividual"
-        ):
-            # logger.debug(f"==> Skipping class ontology YAML creation for {s} {p} {o}")
-            return None
-
-        # Get class type from URI
-        class_uri = get_class_uri_from_individual_uri(s)
-        class_uri_triggers = [
-            "https://www.commoncoreontologies.org/ont00001262",  # Person
-            "https://www.commoncoreontologies.org/ont00000443",  # Commercial Organization
-        ]
-        if class_uri in class_uri_triggers:
-            logger.debug(
-                f"==> Creating class ontology YAML for {class_uri} ({s} {p} {o})"
-            )
-            return self.graph_to_yaml(
-                CreateClassOntologyYamlWorkflowParameters(class_uri=class_uri)
-            )
-        return None
-
-    def graph_to_yaml(
-        self, parameters: CreateClassOntologyYamlWorkflowParameters
-    ) -> str:
-        # Initialize graph
-        graph = Graph()
-        graph.bind("abi", "http://ontology.naas.ai/abi/")
-
-        # Get label and description from class uri
-        query = f"""
-        PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
-        PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
-        SELECT ?label ?definition
-        WHERE {{
-            <{parameters.class_uri}> rdfs:label ?label .
-            <{parameters.class_uri}> skos:definition ?definition .
-        }}
-        """
-        results = services.triple_store_service.query(query)
-        result_list = results_to_list(results)
-        if result_list:
-            ontology_label = result_list[0]["label"]
-            ontology_description = result_list[0]["definition"]
-        else:
-            ontology_label = ""
-            ontology_description = ""
-
-        # Get triples from class uri
-        query = f"""
-        PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
-
-        SELECT DISTINCT ?subject ?predicate ?object
-        WHERE {{
-            ?subject a <{parameters.class_uri}> .
-            ?subject ?predicate ?object .
-        }}
-        ORDER BY ?subject ?predicate
-        """
-        results = services.triple_store_service.query(query)
-        list_uri = []
-        # Add triples to graph
-        for row in results:
-            subject = URIRef(row.get("subject"))
-            predicate = URIRef(row.get("predicate"))
-            obj = row.get("object")
-
-            # Add triple to graph
-            if isinstance(obj, str) and obj.startswith("http://ontology.naas.ai/abi/"):
-                obj = URIRef(obj)
-                list_uri.append(obj)
-            else:
-                obj = Literal(obj)
-            graph.add((subject, predicate, obj))
-
-        # Get all object properties label and type
-        if len(list_uri) > 0:
-            # Filter only ABI URIs
-            uri_filter = (
-                "(" + " || ".join([f"?object = <{uri}>" for uri in list_uri]) + ")"
-            )
-            query = f"""
-            PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
-
-            SELECT DISTINCT ?object ?label ?type
-            WHERE {{
-            ?object rdfs:label ?label .
-            ?object rdf:type ?type .
-            FILTER {uri_filter}
-            }}
-            ORDER BY ?object
-            """
-            results = services.triple_store_service.query(query)
-
-            # Add object properties to graph
-            for row in results:
-                graph.add(
-                    (URIRef(row.get("object")), RDF.type, URIRef(row.get("type")))
-                )
-                graph.add((URIRef(row.get("object")), RDF.type, OWL.NamedIndividual))
-                graph.add(
-                    (URIRef(row.get("object")), RDFS.label, Literal(row.get("label")))
-                )
-
-        # Convert graph to YAML & push to Naas workspace
-        ontology_id = self.__convert_ontology_graph_workflow.graph_to_yaml(
-            ConvertOntologyGraphToYamlWorkflowParameters(
-                graph=graph.serialize(format="turtle"),
-                label=ontology_label,
-                description=ontology_description,
-            )
-        )
-        return ontology_id
-
-    def as_tools(self) -> list[BaseTool]:
-        """Returns a list of LangChain tools for this workflow."""
-        return [
-            StructuredTool(
-                name="ontology_create_class_yaml",
-                description="Create an ontology class YAML and push it to Naas workspace.",
-                func=lambda **kwargs: self.graph_to_yaml(
-                    CreateClassOntologyYamlWorkflowParameters(**kwargs)
-                ),
-                args_schema=CreateClassOntologyYamlWorkflowParameters,
-            )
-        ]
-
-    def as_api(
-        self,
-        router: APIRouter,
-        route_name: str = "",
-        name: str = "",
-        description: str = "",
-        description_stream: str = "",
-        tags: list[str | Enum] | None = None,
-    ) -> None:
-        if tags is None:
-            tags = []
-        return None
-        if tags is None:
-            tags = []
-        return None

naas_abi/workflows/CreateClassOntologyYamlWorkflow_test.py

@@ -1,65 +0,0 @@
-import pytest
-from naas_abi import secret, services
-from naas_abi.workflows.ConvertOntologyGraphToYamlWorkflow import (
-    ConvertOntologyGraphToYamlWorkflowConfiguration,
-)
-from naas_abi.workflows.CreateClassOntologyYamlWorkflow import (
-    CreateClassOntologyYamlWorkflow,
-    CreateClassOntologyYamlWorkflowConfiguration,
-    CreateClassOntologyYamlWorkflowParameters,
-)
-from naas_abi_marketplace.applications.naas.integrations.NaasIntegration import (
-    NaasIntegrationConfiguration,
-)
-
-
-@pytest.fixture
-def workflow() -> CreateClassOntologyYamlWorkflow:
-    return CreateClassOntologyYamlWorkflow(
-        CreateClassOntologyYamlWorkflowConfiguration(
-            services.triple_store_service,
-            ConvertOntologyGraphToYamlWorkflowConfiguration(
-                NaasIntegrationConfiguration(api_key=secret.get("NAAS_API_KEY"))
-            ),
-        )
-    )
-
-
-def test_create_class_ontology_yaml_workflow(workflow: CreateClassOntologyYamlWorkflow):
-    import time
-    from uuid import uuid4
-
-    from naas_abi import services
-    from rdflib import OWL, RDF, RDFS, Graph, Literal, Namespace, URIRef
-
-    ABI = Namespace("http://ontology.naas.ai/abi/")
-
-    graph = Graph()
-    uri = ABI[str(uuid4())]
-    graph.add(
-        (uri, RDF.type, URIRef("https://www.commoncoreontologies.org/ont00000443"))
-    )
-    graph.add((uri, RDF.type, OWL.NamedIndividual))
-    graph.add((uri, RDFS.label, Literal("Naas.ai")))
-    graph.add(
-        (
-            uri,
-            ABI.logo,
-            Literal(
-                "https://encrypted-tbn0.gstatic.com/images?q=tbn:ANd9GcQ9gXMaBLQZ39W6Pk53PRuzFjUvv_6lLRWPoQ&s"
-            ),
-        )
-    )
-    services.triple_store_service.insert(graph)
-    time.sleep(3)
-
-    # Parameters
-    class_uri = "https://www.commoncoreontologies.org/ont00001262"
-
-    # Run workflow
-    ontology_id = workflow.graph_to_yaml(
-        CreateClassOntologyYamlWorkflowParameters(class_uri=class_uri)
-    )
-    assert ontology_id is not None, ontology_id
-    assert ontology_id != "", ontology_id
-    assert isinstance(ontology_id, str), ontology_id

naas_abi/workflows/CreateIndividualOntologyYamlWorkflow.py

@@ -1,183 +0,0 @@
-from dataclasses import dataclass
-from enum import Enum
-from typing import Annotated, Any, Union
-
-from langchain_core.tools import BaseTool, StructuredTool
-from naas_abi import ABIModule
-from naas_abi.workflows.ConvertOntologyGraphToYamlWorkflow import (
-    ConvertOntologyGraphToYamlWorkflow,
-    ConvertOntologyGraphToYamlWorkflowConfiguration,
-    ConvertOntologyGraphToYamlWorkflowParameters,
-)
-from naas_abi_core.services.triple_store.TripleStorePorts import (
-    ITripleStoreService,
-    OntologyEvent,
-)
-from naas_abi_core.utils.Expose import APIRouter
-from naas_abi_core.utils.Graph import URI_REGEX
-from naas_abi_core.utils.SPARQL import SPARQLUtils
-from naas_abi_core.workflow import Workflow, WorkflowConfiguration
-from naas_abi_core.workflow.workflow import WorkflowParameters
-from pydantic import Field
-from rdflib import RDFS, Graph, Literal, URIRef
-
-
-@dataclass
-class CreateIndividualOntologyYamlWorkflowConfiguration(WorkflowConfiguration):
-    """Configuration for CreateOntologyYAML workflow.
-
-    Attributes:
-        naas_integration_config (NaasIntegrationConfiguration): Configuration for the Naas integration
-    """
-
-    triple_store: ITripleStoreService
-    convert_ontology_graph_config: ConvertOntologyGraphToYamlWorkflowConfiguration
-
-
-class CreateIndividualOntologyYamlWorkflowParameters(WorkflowParameters):
-    """Parameters for CreateOntologyYAML workflow execution.
-
-    Attributes:
-        ontology_name (str): The name of the ontology store to use
-        label (str): The label of the ontology
-        description (str): The description of the ontology
-        logo_url (str): The URL of the ontology logo
-        level (str): The level of the ontology (e.g., 'TOP_LEVEL', 'MID_LEVEL', 'DOMAIN', 'USE_CASE')
-        display_relations_names (bool): Whether to display relation names in the visualization
-    """
-
-    individual_uri: Annotated[
-        str,
-        Field(
-            ...,
-            description="The URI of the individual to convert to YAML",
-            pattern=URI_REGEX,
-        ),
-    ]
-    depth: Annotated[
-        int,
-        Field(
-            description="The depth of the subject graph to get. 1 means the individual and its direct properties, 2 means the individual and its direct properties and the properties of the properties, etc."
-        ),
-    ] = 2
-
-
-class CreateIndividualOntologyYamlWorkflow(Workflow):
-    """Workflow for converting ontology files to YAML and pushing them to a Naas workspace."""
-
-    __configuration: CreateIndividualOntologyYamlWorkflowConfiguration
-    __sparql_utils: SPARQLUtils
-
-    def __init__(
-        self, configuration: CreateIndividualOntologyYamlWorkflowConfiguration
-    ):
-        self.__configuration = configuration
-        self.__convert_ontology_graph_workflow = ConvertOntologyGraphToYamlWorkflow(
-            self.__configuration.convert_ontology_graph_config
-        )
-        self.__sparql_utils: SPARQLUtils = SPARQLUtils(
-            ABIModule.get_instance().engine.services.triple_store
-        )
-
-    def trigger(
-        self, event: OntologyEvent, triple: tuple[Any, Any, Any]
-    ) -> Union[str, None]:
-        s, p, o = triple
-        if (
-            str(event) != str(OntologyEvent.INSERT)
-            or not str(s).startswith("http://ontology.naas.ai/abi/")
-            or not str(o).startswith("http://ontology.naas.ai/abi/")
-        ):
-            return None
-
-        # Get class type from URI
-        class_uri = self.__sparql_utils.get_class_uri_from_individual_uri(s)
-        class_uri_triggers = [
-            "https://www.commoncoreontologies.org/ont00001262",  # Person
-            "https://www.commoncoreontologies.org/ont00000443",  # Commercial Organization
-        ]
-        if class_uri in class_uri_triggers:
-            return self.graph_to_yaml(
-                CreateIndividualOntologyYamlWorkflowParameters(
-                    individual_uri=s, depth=2
-                )
-            )
-        return None
-
-    def graph_to_yaml(
-        self, parameters: CreateIndividualOntologyYamlWorkflowParameters
-    ) -> Union[str, None]:
-        # Create individual graph
-        graph = self.__sparql_utils.get_subject_graph(
-            parameters.individual_uri, parameters.depth
-        )
-
-        # Get label from individual URI
-        ontology_id = None
-        ontology_label = ""
-        ontology_description = ""
-        ontology_logo_url = ""
-        new_ontology = True
-        for s, p, o in graph:
-            if s == URIRef(parameters.individual_uri) and p == RDFS.label:
-                ontology_label = str(o)
-                ontology_description = f"{ontology_label} Ontology"
-            if (
-                s == URIRef(parameters.individual_uri)
-                and str(p) == "http://ontology.naas.ai/abi/logo"
-            ):
-                ontology_logo_url = str(o)
-            if (
-                s == URIRef(parameters.individual_uri)
-                and str(p) == "http://ontology.naas.ai/abi/naas_ontology_id"
-            ):
-                ontology_id = str(o)
-                new_ontology = False
-
-        # Convert graph to YAML & push to Naas workspace
-        ontology_id = self.__convert_ontology_graph_workflow.graph_to_yaml(
-            ConvertOntologyGraphToYamlWorkflowParameters(
-                graph=graph.serialize(format="turtle"),
-                ontology_id=ontology_id,
-                label=ontology_label,
-                description=ontology_description,
-                logo_url=ontology_logo_url,
-            )
-        )
-        if new_ontology:
-            graph_insert = Graph()
-            graph_insert.add(
-                (
-                    URIRef(parameters.individual_uri),
-                    URIRef("http://ontology.naas.ai/abi/naas_ontology_id"),
-                    Literal(ontology_id),
-                )
-            )
-            self.__configuration.triple_store.insert(graph_insert)
-        return ontology_id
-
-    def as_tools(self) -> list[BaseTool]:
-        """Returns a list of LangChain tools for this workflow."""
-        return [
-            StructuredTool(
-                name="create_individual_ontology_yaml",
-                description="Create or Update a YAML ontology from an individual/instance in triple store and push it to Naas workspace.",
-                func=lambda **kwargs: self.graph_to_yaml(
-                    CreateIndividualOntologyYamlWorkflowParameters(**kwargs)
-                ),
-                args_schema=CreateIndividualOntologyYamlWorkflowParameters,
-            )
-        ]
-
-    def as_api(
-        self,
-        router: APIRouter,
-        route_name: str = "",
-        name: str = "",
-        description: str = "",
-        description_stream: str = "",
-        tags: list[str | Enum] | None = None,
-    ) -> None:
-        if tags is None:
-            tags = []
-        return None

naas_abi/workflows/CreateIndividualOntologyYamlWorkflow_test.py

@@ -1,86 +0,0 @@
-import pytest
-from naas_abi import secret, services
-from naas_abi.workflows.ConvertOntologyGraphToYamlWorkflow import (
-    ConvertOntologyGraphToYamlWorkflowConfiguration,
-)
-from naas_abi.workflows.CreateIndividualOntologyYamlWorkflow import (
-    CreateIndividualOntologyYamlWorkflow,
-    CreateIndividualOntologyYamlWorkflowConfiguration,
-    CreateIndividualOntologyYamlWorkflowParameters,
-)
-from naas_abi_marketplace.applications.naas.integrations.NaasIntegration import (
-    NaasIntegration,
-    NaasIntegrationConfiguration,
-)
-
-
-@pytest.fixture
-def workflow() -> CreateIndividualOntologyYamlWorkflow:
-    return CreateIndividualOntologyYamlWorkflow(
-        CreateIndividualOntologyYamlWorkflowConfiguration(
-            services.triple_store_service,
-            ConvertOntologyGraphToYamlWorkflowConfiguration(
-                NaasIntegrationConfiguration(api_key=secret.get("NAAS_API_KEY"))
-            ),
-        )
-    )
-
-
-def test_create_individual_ontology_yaml_workflow(
-    workflow: CreateIndividualOntologyYamlWorkflow,
-):
-    import time
-    from uuid import uuid4
-
-    from naas_abi import config, logger, services
-    from naas_abi_core.utils.SPARQL import get_subject_graph
-    from rdflib import OWL, RDF, RDFS, Graph, Literal, Namespace, URIRef
-
-    ABI = Namespace("http://ontology.naas.ai/abi/")
-
-    graph = Graph()
-    uri = ABI[str(uuid4())]
-    graph.add(
-        (uri, RDF.type, URIRef("https://www.commoncoreontologies.org/ont00000443"))
-    )
-    graph.add((uri, RDF.type, OWL.NamedIndividual))
-    graph.add((uri, RDFS.label, Literal("Naas.ai")))
-    graph.add(
-        (
-            uri,
-            ABI.logo,
-            Literal(
-                "https://encrypted-tbn0.gstatic.com/images?q=tbn:ANd9GcQ9gXMaBLQZ39W6Pk53PRuzFjUvv_6lLRWPoQ&s"
-            ),
-        )
-    )
-    services.triple_store_service.insert(graph)
-    time.sleep(3)
-
-    # Run workflow
-    ontology_id = workflow.graph_to_yaml(
-        CreateIndividualOntologyYamlWorkflowParameters(individual_uri=str(uri), depth=1)
-    )
-
-    # Check if ontology id is set
-    graph = get_subject_graph(str(uri), 1)
-    naas_ontology_id = list(
-        graph.triples(
-            (None, URIRef("http://ontology.naas.ai/abi/naas_ontology_id"), None)
-        )
-    )[0][2]
-    assert str(ontology_id) == str(naas_ontology_id), ontology_id
-
-    # Remove graph
-    services.triple_store_service.remove(graph)
-
-    # Remove ontology
-    if ontology_id:
-        naas_integration = NaasIntegration(
-            NaasIntegrationConfiguration(api_key=secret.get("NAAS_API_KEY"))
-        )
-        result = naas_integration.delete_ontology(
-            workspace_id=config.workspace_id, ontology_id=ontology_id
-        )
-        logger.info(f"Removed ontology: {result}")
-        assert result is not None, result