mystmd 1.2.1__py3-none-any.whl → 1.2.3__py3-none-any.whl

mystmd_py/myst.cjs

@@ -884,7 +884,7 @@ var require_make_built_in = __commonJS({
     var defineProperty = Object.defineProperty;
     var stringSlice = uncurryThis("".slice);
     var replace = uncurryThis("".replace);
-    var join21 = uncurryThis([].join);
+    var join19 = uncurryThis([].join);
     var CONFIGURABLE_LENGTH = DESCRIPTORS && !fails(function() {
       return defineProperty(function() {
       }, "length", { value: 8 }).length !== 8;
@@ -917,7 +917,7 @@ var require_make_built_in = __commonJS({
       }
       var state = enforceInternalState(value);
       if (!hasOwn(state, "source")) {
-        state.source = join21(TEMPLATE, typeof name3 == "string" ? name3 : "");
+        state.source = join19(TEMPLATE, typeof name3 == "string" ? name3 : "");
       }
       return value;
     };
@@ -3920,7 +3920,7 @@ var require_es_array_join = __commonJS({
     var ES3_STRINGS = IndexedObject != Object;
     var FORCED = ES3_STRINGS || !arrayMethodIsStrict("join", ",");
     $2({ target: "Array", proto: true, forced: FORCED }, {
-      join: function join21(separator) {
+      join: function join19(separator) {
         return nativeJoin(toIndexedObject(this), separator === void 0 ? "," : separator);
       }
     });
@@ -5796,13 +5796,13 @@ var require_function_bind = __commonJS({
     var NATIVE_BIND = require_function_bind_native();
     var $Function = Function;
     var concat2 = uncurryThis([].concat);
-    var join21 = uncurryThis([].join);
+    var join19 = uncurryThis([].join);
     var factories = {};
     var construct = function(C, argsLength, args) {
       if (!hasOwn(factories, argsLength)) {
         for (var list6 = [], i2 = 0; i2 < argsLength; i2++)
           list6[i2] = "a[" + i2 + "]";
-        factories[argsLength] = $Function("C,a", "return new C(" + join21(list6, ",") + ")");
+        factories[argsLength] = $Function("C,a", "return new C(" + join19(list6, ",") + ")");
       }
       return factories[argsLength](C, args);
     };
@@ -9991,7 +9991,7 @@ var require_es_string_from_code_point = __commonJS({
     var $RangeError = RangeError;
     var fromCharCode = String.fromCharCode;
     var $fromCodePoint = String.fromCodePoint;
-    var join21 = uncurryThis([].join);
+    var join19 = uncurryThis([].join);
     var INCORRECT_LENGTH = !!$fromCodePoint && $fromCodePoint.length != 1;
     $2({ target: "String", stat: true, arity: 1, forced: INCORRECT_LENGTH }, {
       // eslint-disable-next-line no-unused-vars -- required for `.length`
@@ -10006,7 +10006,7 @@ var require_es_string_from_code_point = __commonJS({
             throw $RangeError(code7 + " is not a valid code point");
           elements[i2] = code7 < 65536 ? fromCharCode(code7) : fromCharCode(((code7 -= 65536) >> 10) + 55296, code7 % 1024 + 56320);
         }
-        return join21(elements, "");
+        return join19(elements, "");
       }
     });
   }
@@ -10397,7 +10397,7 @@ var require_es_string_raw = __commonJS({
     var toString6 = require_to_string();
     var lengthOfArrayLike = require_length_of_array_like();
     var push = uncurryThis([].push);
-    var join21 = uncurryThis([].join);
+    var join19 = uncurryThis([].join);
     $2({ target: "String", stat: true }, {
       raw: function raw2(template) {
         var rawTemplate = toIndexedObject(toObject(template).raw);
@@ -10410,7 +10410,7 @@ var require_es_string_raw = __commonJS({
         while (true) {
           push(elements, toString6(rawTemplate[i2++]));
           if (i2 === literalSegments)
-            return join21(elements, "");
+            return join19(elements, "");
           if (i2 < argumentsLength)
             push(elements, toString6(arguments[i2]));
         }
@@ -10940,7 +10940,7 @@ var require_es_string_to_well_formed = __commonJS({
     var $Array = Array;
     var charAt = uncurryThis("".charAt);
     var charCodeAt = uncurryThis("".charCodeAt);
-    var join21 = uncurryThis([].join);
+    var join19 = uncurryThis([].join);
     var $toWellFormed = "".toWellFormed;
     var REPLACEMENT_CHARACTER2 = "\uFFFD";
     var TO_STRING_CONVERSION_BUG = $toWellFormed && fails(function() {
@@ -10964,7 +10964,7 @@ var require_es_string_to_well_formed = __commonJS({
             result[++i2] = charAt(S3, i2);
           }
         }
-        return join21(result, "");
+        return join19(result, "");
       }
     });
   }
@@ -12021,7 +12021,7 @@ var require_es_typed_array_join = __commonJS({
     var aTypedArray = ArrayBufferViewCore.aTypedArray;
     var exportTypedArrayMethod = ArrayBufferViewCore.exportTypedArrayMethod;
     var $join = uncurryThis([].join);
-    exportTypedArrayMethod("join", function join21(separator) {
+    exportTypedArrayMethod("join", function join19(separator) {
       return $join(aTypedArray(this), separator);
     });
   }
@@ -12392,12 +12392,12 @@ var require_es_typed_array_to_string = __commonJS({
     var Uint8Array2 = global2.Uint8Array;
     var Uint8ArrayPrototype = Uint8Array2 && Uint8Array2.prototype || {};
     var arrayToString = [].toString;
-    var join21 = uncurryThis([].join);
+    var join19 = uncurryThis([].join);
     if (fails(function() {
       arrayToString.call({});
     })) {
       arrayToString = function toString6() {
-        return join21(this);
+        return join19(this);
       };
     }
     var IS_NOT_ARRAY_METHOD = Uint8ArrayPrototype.toString != arrayToString;
@@ -13419,12 +13419,12 @@ var require_structured_clone_proper_transfer = __commonJS({
     var IS_BROWSER = require_engine_is_browser();
     var IS_DENO = require_engine_is_deno();
     var IS_NODE = require_engine_is_node();
-    var structuredClone = global2.structuredClone;
-    module2.exports = !!structuredClone && !fails(function() {
+    var structuredClone2 = global2.structuredClone;
+    module2.exports = !!structuredClone2 && !fails(function() {
       if (IS_DENO && V8 > 92 || IS_NODE && V8 > 94 || IS_BROWSER && V8 > 97)
         return false;
       var buffer2 = new ArrayBuffer(8);
-      var clone4 = structuredClone(buffer2, { transfer: [buffer2] });
+      var clone4 = structuredClone2(buffer2, { transfer: [buffer2] });
       return buffer2.byteLength != 0 || clone4.byteLength != 8;
     });
   }
@@ -13983,7 +13983,7 @@ var require_web_structured_clone = __commonJS({
       }
     };
     $2({ global: true, enumerable: true, sham: !PROPER_TRANSFER, forced: FORCED_REPLACEMENT }, {
-      structuredClone: function structuredClone(value) {
+      structuredClone: function structuredClone2(value) {
         var options = validateArgumentsLength(arguments.length, 1) > 1 && !isNullOrUndefined(arguments[1]) ? anObject(arguments[1]) : void 0;
         var transfer = options ? options.transfer : void 0;
         var transferredBuffers = false;
@@ -14085,7 +14085,7 @@ var require_string_punycode_to_ascii = __commonJS({
     var floor = Math.floor;
     var fromCharCode = String.fromCharCode;
     var charCodeAt = uncurryThis("".charCodeAt);
-    var join21 = uncurryThis([].join);
+    var join19 = uncurryThis([].join);
     var push = uncurryThis([].push);
     var replace = uncurryThis("".replace);
     var split2 = uncurryThis("".split);
@@ -14183,7 +14183,7 @@ var require_string_punycode_to_ascii = __commonJS({
         delta++;
         n++;
       }
-      return join21(output2, "");
+      return join19(output2, "");
     };
     module2.exports = function(input3) {
       var encoded = [];
@@ -14193,7 +14193,7 @@ var require_string_punycode_to_ascii = __commonJS({
         label = labels[i2];
         push(encoded, exec3(regexNonASCII, label) ? "xn--" + encode(label) : label);
       }
-      return join21(encoded, ".");
+      return join19(encoded, ".");
     };
   }
 });
@@ -14253,7 +14253,7 @@ var require_web_url_search_params_constructor = __commonJS({
     var decodeURIComponent2 = global2.decodeURIComponent;
     var encodeURIComponent2 = global2.encodeURIComponent;
     var charAt = uncurryThis("".charAt);
-    var join21 = uncurryThis([].join);
+    var join19 = uncurryThis([].join);
     var push = uncurryThis([].push);
     var replace = uncurryThis("".replace);
     var shift = uncurryThis([].shift);
@@ -14361,7 +14361,7 @@ var require_web_url_search_params_constructor = __commonJS({
               entry = split2(attribute2, "=");
               push(this.entries, {
                 key: deserialize(shift(entry)),
-                value: deserialize(join21(entry, "="))
+                value: deserialize(join19(entry, "="))
               });
             }
           }
@@ -14376,7 +14376,7 @@ var require_web_url_search_params_constructor = __commonJS({
           entry = entries2[index4++];
           push(result, serialize3(entry.key) + "=" + serialize3(entry.value));
         }
-        return join21(result, "&");
+        return join19(result, "&");
       },
       update: function() {
         this.entries.length = 0;
@@ -14635,7 +14635,7 @@ var require_web_url_constructor = __commonJS({
     var pow = Math.pow;
     var charAt = uncurryThis("".charAt);
     var exec3 = uncurryThis(/./.exec);
-    var join21 = uncurryThis([].join);
+    var join19 = uncurryThis([].join);
     var numberToString = uncurryThis(1 .toString);
     var pop = uncurryThis([].pop);
     var push = uncurryThis([].push);
@@ -14828,7 +14828,7 @@ var require_web_url_constructor = __commonJS({
           unshift(result, host % 256);
           host = floor(host / 256);
         }
-        return join21(result, ".");
+        return join19(result, ".");
       } else if (typeof host == "object") {
         result = "";
         compress = findLongestZeroSequence(host);
@@ -15219,7 +15219,7 @@ var require_web_url_constructor = __commonJS({
                   url.fragment = "";
                   state = FRAGMENT;
                 } else {
-                  if (!startsWithWindowsDriveLetter(join21(arraySlice(codePoints, pointer), ""))) {
+                  if (!startsWithWindowsDriveLetter(join19(arraySlice(codePoints, pointer), ""))) {
                     url.host = base5.host;
                     url.path = arraySlice(base5.path);
                     url.shortenPath();
@@ -15237,7 +15237,7 @@ var require_web_url_constructor = __commonJS({
                 state = FILE_HOST;
                 break;
               }
-              if (base5 && base5.scheme == "file" && !startsWithWindowsDriveLetter(join21(arraySlice(codePoints, pointer), ""))) {
+              if (base5 && base5.scheme == "file" && !startsWithWindowsDriveLetter(join19(arraySlice(codePoints, pointer), ""))) {
                 if (isWindowsDriveLetter(base5.path[0], true))
                   push(url.path, base5.path[0]);
                 else
@@ -15425,7 +15425,7 @@ var require_web_url_constructor = __commonJS({
             output2 += ":" + port;
         } else if (scheme == "file")
           output2 += "//";
-        output2 += url.cannotBeABaseURL ? path42[0] : path42.length ? "/" + join21(path42, "/") : "";
+        output2 += url.cannotBeABaseURL ? path42[0] : path42.length ? "/" + join19(path42, "/") : "";
         if (query !== null)
           output2 += "?" + query;
         if (fragment !== null)
@@ -15524,7 +15524,7 @@ var require_web_url_constructor = __commonJS({
       // https://url.spec.whatwg.org/#dom-url-pathname
       getPathname: function() {
         var path42 = this.path;
-        return this.cannotBeABaseURL ? path42[0] : path42.length ? "/" + join21(path42, "/") : "";
+        return this.cannotBeABaseURL ? path42[0] : path42.length ? "/" + join19(path42, "/") : "";
       },
       setPathname: function(pathname) {
         if (this.cannotBeABaseURL)
@@ -16712,7 +16712,7 @@ var require_array_buffer_transfer = __commonJS({
     var arrayBufferByteLength = require_array_buffer_byte_length();
     var PROPER_TRANSFER = require_structured_clone_proper_transfer();
     var TypeError2 = global2.TypeError;
-    var structuredClone = global2.structuredClone;
+    var structuredClone2 = global2.structuredClone;
     var ArrayBuffer2 = global2.ArrayBuffer;
     var DataView2 = global2.DataView;
     var min = Math.min;
@@ -16729,7 +16729,7 @@ var require_array_buffer_transfer = __commonJS({
       var fixedLength = !isResizable || !isResizable(arrayBuffer);
       if (isDetached(arrayBuffer))
         throw TypeError2("ArrayBuffer is detached");
-      var newBuffer = structuredClone(arrayBuffer, { transfer: [arrayBuffer] });
+      var newBuffer = structuredClone2(arrayBuffer, { transfer: [arrayBuffer] });
       if (byteLength2 == newByteLength && (preserveResizability || fixedLength))
         return newBuffer;
       if (byteLength2 >= newByteLength && (!preserveResizability || fixedLength))
@@ -44282,7 +44282,7 @@ var require_util2 = __commonJS({
       return path42;
     });
     exports2.normalize = normalize6;
-    function join21(aRoot, aPath) {
+    function join19(aRoot, aPath) {
       if (aRoot === "") {
         aRoot = ".";
       }
@@ -44314,7 +44314,7 @@ var require_util2 = __commonJS({
       }
       return joined;
     }
-    exports2.join = join21;
+    exports2.join = join19;
     exports2.isAbsolute = function(aPath) {
       return aPath.charAt(0) === "/" || urlRegexp.test(aPath);
     };
@@ -44528,7 +44528,7 @@ var require_util2 = __commonJS({
             parsed.path = parsed.path.substring(0, index4 + 1);
           }
         }
-        sourceURL = join21(urlGenerate(parsed), sourceURL);
+        sourceURL = join19(urlGenerate(parsed), sourceURL);
       }
       return normalize6(sourceURL);
     }
@@ -45976,7 +45976,7 @@ var require_previous_map = __commonJS({
     "use strict";
     var { SourceMapConsumer, SourceMapGenerator } = require_source_map();
     var { existsSync: existsSync2, readFileSync: readFileSync2 } = require("fs");
-    var { dirname: dirname6, join: join21 } = require("path");
+    var { dirname: dirname7, join: join19 } = require("path");
     function fromBase64(str2) {
       if (Buffer) {
         return Buffer.from(str2, "base64").toString();
@@ -45996,7 +45996,7 @@ var require_previous_map = __commonJS({
           this.mapFile = opts.from;
         }
         if (this.mapFile)
-          this.root = dirname6(this.mapFile);
+          this.root = dirname7(this.mapFile);
         if (text7)
           this.text = text7;
       }
@@ -46039,7 +46039,7 @@ var require_previous_map = __commonJS({
         }
       }
       loadFile(path42) {
-        this.root = dirname6(path42);
+        this.root = dirname7(path42);
         if (existsSync2(path42)) {
           this.mapFile = path42;
           return readFileSync2(path42, "utf-8").toString().trim();
@@ -46078,7 +46078,7 @@ var require_previous_map = __commonJS({
         } else if (this.annotation) {
           let map14 = this.annotation;
           if (file)
-            map14 = join21(dirname6(file), map14);
+            map14 = join19(dirname7(file), map14);
           return this.loadFile(map14);
         }
       }
@@ -46314,11 +46314,11 @@ var require_map_generator = __commonJS({
   "../../node_modules/postcss/lib/map-generator.js"(exports2, module2) {
     "use strict";
     var { SourceMapConsumer, SourceMapGenerator } = require_source_map();
-    var { dirname: dirname6, relative: relative4, resolve: resolve7, sep: sep5 } = require("path");
+    var { dirname: dirname7, relative: relative4, resolve: resolve7, sep: sep5 } = require("path");
     var { pathToFileURL } = require("url");
     var Input = require_input4();
     var sourceMapAvailable = Boolean(SourceMapConsumer && SourceMapGenerator);
-    var pathAvailable = Boolean(dirname6 && resolve7 && relative4 && sep5);
+    var pathAvailable = Boolean(dirname7 && resolve7 && relative4 && sep5);
     var MapGenerator = class {
       constructor(stringify4, root6, opts, cssString) {
         this.stringify = stringify4;
@@ -46351,7 +46351,7 @@ var require_map_generator = __commonJS({
       applyPrevMaps() {
         for (let prev of this.previous()) {
           let from4 = this.toUrl(this.path(prev.file));
-          let root6 = prev.root || dirname6(prev.file);
+          let root6 = prev.root || dirname7(prev.file);
           let map14;
           if (this.mapOpts.sourcesContent === false) {
             map14 = new SourceMapConsumer(prev.text);
@@ -46539,9 +46539,9 @@ var require_map_generator = __commonJS({
         let cached = this.memoizedPaths.get(file);
         if (cached)
           return cached;
-        let from4 = this.opts.to ? dirname6(this.opts.to) : ".";
+        let from4 = this.opts.to ? dirname7(this.opts.to) : ".";
         if (typeof this.mapOpts.annotation === "string") {
-          from4 = dirname6(resolve7(from4, this.mapOpts.annotation));
+          from4 = dirname7(resolve7(from4, this.mapOpts.annotation));
         }
         let path42 = relative4(from4, file);
         this.memoizedPaths.set(file, path42);
@@ -66213,19 +66213,19 @@ var require_citeproc_commonjs = __commonJS({
           for (var i3 = 0, ilen2 = this.variables.length; i3 < ilen2; i3++) {
             var variable = this.variables[i3];
             if (["authority", "committee"].indexOf(variable) > -1 && "string" === typeof Item[variable] && "names" === this.name) {
-              var isValid2 = true;
+              var isValid3 = true;
               var rawNames = Item[variable].split(/\s*;\s*/);
               var rawMultiNames = {};
               if (Item.multi && Item.multi._keys[variable]) {
                 for (var langTag in Item.multi._keys[variable]) {
                   rawMultiNames[langTag] = Item.multi._keys[variable][langTag].split(/\s*;\s*/);
                   if (rawMultiNames[langTag].length !== rawNames.length) {
-                    isValid2 = false;
+                    isValid3 = false;
                     break;
                   }
                 }
               }
-              if (!isValid2) {
+              if (!isValid3) {
                 rawNames = [Item[variable]];
                 rawMultiNames = Item.multi._keys[variable];
               }
@@ -91378,7 +91378,7 @@ var require_isexe = __commonJS({
 var require_lib15 = __commonJS({
   "../../node_modules/which/lib/index.js"(exports2, module2) {
     var isexe = require_isexe();
-    var { join: join21, delimiter: delimiter2, sep: sep5, posix: posix2 } = require("path");
+    var { join: join19, delimiter: delimiter2, sep: sep5, posix: posix2 } = require("path");
     var isWindows = process.platform === "win32";
     var rSlash = new RegExp(`[${posix2.sep}${sep5 === posix2.sep ? "" : sep5}]`.replace(/(\\)/g, "\\$1"));
     var rRel = new RegExp(`^\\.${rSlash.source}`);
@@ -91411,7 +91411,7 @@ var require_lib15 = __commonJS({
     var getPathPart = (raw2, cmd) => {
       const pathPart = /^".*"$/.test(raw2) ? raw2.slice(1, -1) : raw2;
       const prefix2 = !pathPart && rRel.test(cmd) ? cmd.slice(0, 2) : "";
-      return prefix2 + join21(pathPart, cmd);
+      return prefix2 + join19(pathPart, cmd);
     };
     var which6 = async (cmd, opt = {}) => {
       const { pathEnv, pathExt, pathExtExe } = getPathInfo(cmd, opt);
@@ -95906,14 +95906,14 @@ var require_node_domexception = __commonJS({
 });
 
 // ../../node_modules/fetch-blob/from.js
-var import_node_fs16, import_node_domexception, stat, _path2, _start, _BlobDataItem, BlobDataItem;
+var import_node_fs17, import_node_domexception, stat, _path2, _start, _BlobDataItem, BlobDataItem;
 var init_from = __esm({
   "../../node_modules/fetch-blob/from.js"() {
-    import_node_fs16 = require("fs");
+    import_node_fs17 = require("fs");
     import_node_domexception = __toESM(require_node_domexception(), 1);
     init_file();
     init_fetch_blob();
-    ({ stat } = import_node_fs16.promises);
+    ({ stat } = import_node_fs17.promises);
     _BlobDataItem = class {
       constructor(options) {
         __privateAdd(this, _path2, void 0);
@@ -95940,7 +95940,7 @@ var init_from = __esm({
         if (mtimeMs > this.lastModified) {
           throw new import_node_domexception.default("The requested file could not be read, typically due to permission problems that have occurred after a reference to a file was acquired.", "NotReadableError");
         }
-        yield* (0, import_node_fs16.createReadStream)(__privateGet(this, _path2), {
+        yield* (0, import_node_fs17.createReadStream)(__privateGet(this, _path2), {
           start: __privateGet(this, _start),
           end: __privateGet(this, _start) + this.size - 1
         });
@@ -98082,8 +98082,8 @@ var require_adm_zip = __commonJS({
         return null;
       }
       function fixPath(zipPath) {
-        const { join: join21, normalize: normalize6, sep: sep5 } = pth.posix;
-        return join21(".", normalize6(sep5 + zipPath.split("\\").join(sep5) + sep5));
+        const { join: join19, normalize: normalize6, sep: sep5 } = pth.posix;
+        return join19(".", normalize6(sep5 + zipPath.split("\\").join(sep5) + sep5));
       }
       return {
         /**
@@ -98976,7 +98976,7 @@ var require_cjs3 = __commonJS({
 var require_lib16 = __commonJS({
   "../myst-execute/node_modules/which/lib/index.js"(exports2, module2) {
     var { isexe, sync: isexeSync } = require_cjs3();
-    var { join: join21, delimiter: delimiter2, sep: sep5, posix: posix2 } = require("path");
+    var { join: join19, delimiter: delimiter2, sep: sep5, posix: posix2 } = require("path");
     var isWindows = process.platform === "win32";
     var rSlash = new RegExp(`[${posix2.sep}${sep5 === posix2.sep ? "" : sep5}]`.replace(/(\\)/g, "\\$1"));
     var rRel = new RegExp(`^\\.${rSlash.source}`);
@@ -99005,7 +99005,7 @@ var require_lib16 = __commonJS({
     var getPathPart = (raw2, cmd) => {
       const pathPart = /^".*"$/.test(raw2) ? raw2.slice(1, -1) : raw2;
       const prefix2 = !pathPart && rRel.test(cmd) ? cmd.slice(0, 2) : "";
-      return prefix2 + join21(pathPart, cmd);
+      return prefix2 + join19(pathPart, cmd);
     };
     var which6 = async (cmd, opt = {}) => {
       const { pathEnv, pathExt, pathExtExe } = getPathInfo(cmd, opt);
@@ -102799,9 +102799,9 @@ var require_nodefs_handler = __commonJS({
         if (this.fsw.closed) {
           return;
         }
-        const dirname6 = sysPath.dirname(file);
+        const dirname7 = sysPath.dirname(file);
         const basename3 = sysPath.basename(file);
-        const parent2 = this.fsw._getWatchedDir(dirname6);
+        const parent2 = this.fsw._getWatchedDir(dirname7);
         let prevStats = stats;
         if (parent2.has(basename3))
           return;
@@ -102826,7 +102826,7 @@ var require_nodefs_handler = __commonJS({
                 prevStats = newStats2;
               }
             } catch (error) {
-              this.fsw._remove(dirname6, basename3);
+              this.fsw._remove(dirname7, basename3);
             }
           } else if (parent2.has(basename3)) {
             const at = newStats.atimeMs;
@@ -108220,7 +108220,7 @@ var require_filters = __commonJS({
       return r2.copySafeness(str2, res);
     }
     _exports.indent = indent2;
-    function join21(arr, del2, attr) {
+    function join19(arr, del2, attr) {
       del2 = del2 || "";
       if (attr) {
         arr = lib.map(arr, function(v) {
@@ -108229,7 +108229,7 @@ var require_filters = __commonJS({
       }
       return arr.join(del2);
     }
-    _exports.join = join21;
+    _exports.join = join19;
     function last(arr) {
       return arr[arr.length - 1];
     }
@@ -134349,10 +134349,10 @@ var require_view = __commonJS({
     var debug = require_src3()("express:view");
     var path42 = require("path");
     var fs45 = require("fs");
-    var dirname6 = path42.dirname;
+    var dirname7 = path42.dirname;
     var basename3 = path42.basename;
     var extname7 = path42.extname;
-    var join21 = path42.join;
+    var join19 = path42.join;
     var resolve7 = path42.resolve;
     module2.exports = View;
     function View(name3, options) {
@@ -134388,7 +134388,7 @@ var require_view = __commonJS({
       for (var i2 = 0; i2 < roots.length && !path43; i2++) {
         var root6 = roots[i2];
         var loc = resolve7(root6, name3);
-        var dir = dirname6(loc);
+        var dir = dirname7(loc);
         var file = basename3(loc);
         path43 = this.resolve(dir, file);
       }
@@ -134400,12 +134400,12 @@ var require_view = __commonJS({
     };
     View.prototype.resolve = function resolve8(dir, file) {
       var ext2 = this.ext;
-      var path43 = join21(dir, file);
+      var path43 = join19(dir, file);
       var stat2 = tryStat(path43);
       if (stat2 && stat2.isFile()) {
         return path43;
       }
-      path43 = join21(dir, basename3(file, ext2), "index" + ext2);
+      path43 = join19(dir, basename3(file, ext2), "index" + ext2);
       stat2 = tryStat(path43);
       if (stat2 && stat2.isFile()) {
         return path43;
@@ -135472,7 +135472,7 @@ var require_send = __commonJS({
     var Stream4 = require("stream");
     var util3 = require("util");
     var extname7 = path42.extname;
-    var join21 = path42.join;
+    var join19 = path42.join;
     var normalize6 = path42.normalize;
     var resolve7 = path42.resolve;
     var sep5 = path42.sep;
@@ -135691,7 +135691,7 @@ var require_send = __commonJS({
           return res;
         }
         parts = path43.split(sep5);
-        path43 = normalize6(join21(root6, path43));
+        path43 = normalize6(join19(root6, path43));
       } else {
         if (UP_PATH_REGEXP.test(path43)) {
           debug('malicious path "%s"', path43);
@@ -135832,7 +135832,7 @@ var require_send = __commonJS({
             return self2.onStatError(err);
           return self2.error(404);
         }
-        var p5 = join21(path43, self2._index[i2]);
+        var p5 = join19(path43, self2._index[i2]);
         debug('stat "%s"', p5);
         fs45.stat(p5, function(err2, stat2) {
           if (err2)
@@ -162165,7 +162165,7 @@ var require_buffer_list = __commonJS({
         }
       }, {
         key: "join",
-        value: function join21(s5) {
+        value: function join19(s5) {
           if (this.length === 0)
             return "";
           var p5 = this.head;
@@ -175686,7 +175686,7 @@ var require_minimist = __commonJS({
 var require_rc = __commonJS({
   "../../node_modules/rc/index.js"(exports2, module2) {
     var cc = require_utils15();
-    var join21 = require("path").join;
+    var join19 = require("path").join;
     var deepExtend = require_deep_extend();
     var etc = "/etc";
     var win = process.platform === "win32";
@@ -175712,15 +175712,15 @@ var require_rc = __commonJS({
       }
       if (!win)
         [
-          join21(etc, name3, "config"),
-          join21(etc, name3 + "rc")
+          join19(etc, name3, "config"),
+          join19(etc, name3 + "rc")
         ].forEach(addConfigFile);
       if (home)
         [
-          join21(home, ".config", name3, "config"),
-          join21(home, ".config", name3),
-          join21(home, "." + name3, "config"),
-          join21(home, "." + name3 + "rc")
+          join19(home, ".config", name3, "config"),
+          join19(home, ".config", name3),
+          join19(home, "." + name3, "config"),
+          join19(home, "." + name3 + "rc")
         ].forEach(addConfigFile);
       addConfigFile(cc.find("." + name3 + "rc"));
       if (env7.config)
@@ -177098,11 +177098,11 @@ var require_util6 = __commonJS({
           if (files.includes("node_modules") || files.includes("package.json") || files.includes("package.json5") || files.includes("package.yaml") || files.includes("pnpm-workspace.yaml")) {
             return name4;
           }
-          const dirname6 = path42.dirname(name4);
-          if (dirname6 === name4) {
+          const dirname7 = path42.dirname(name4);
+          if (dirname7 === name4) {
             return original;
           }
-          return find2(dirname6, original);
+          return find2(dirname7, original);
         } catch (error) {
           if (name4 === original) {
             if (error.code === "ENOENT") {
@@ -184004,7 +184004,7 @@ var require_url = __commonJS({
         return url && parse13(url).toString();
       }
       URLExt2.normalize = normalize6;
-      function join21(...parts) {
+      function join19(...parts) {
         let u3 = (0, url_parse_1.default)(parts[0], {});
         const isSchemaLess = u3.protocol === "" && u3.slashes;
         if (isSchemaLess) {
@@ -184014,9 +184014,9 @@ var require_url = __commonJS({
         const path42 = path_1.posix.join(`${!!prefix2 && u3.pathname[0] !== "/" ? "/" : ""}${u3.pathname}`, ...parts.slice(1));
         return `${prefix2}${path42 === "." ? "" : path42}`;
       }
-      URLExt2.join = join21;
+      URLExt2.join = join19;
       function encodeParts(url) {
-        return join21(...url.split("/").map(encodeURIComponent));
+        return join19(...url.split("/").map(encodeURIComponent));
       }
       URLExt2.encodeParts = encodeParts;
       function objectToQueryString(value) {
@@ -184236,11 +184236,11 @@ var require_path2 = __commonJS({
     var path_1 = require("path");
     var PathExt;
     (function(PathExt2) {
-      function join21(...paths) {
+      function join19(...paths) {
         const path42 = path_1.posix.join(...paths);
         return path42 === "." ? "" : removeSlash(path42);
       }
-      PathExt2.join = join21;
+      PathExt2.join = join19;
       function joinWithLeadingSlash(...paths) {
         const path42 = path_1.posix.join(...paths);
         return path42 === "." ? "" : path42;
@@ -184250,11 +184250,11 @@ var require_path2 = __commonJS({
         return path_1.posix.basename(path42, ext2);
       }
       PathExt2.basename = basename3;
-      function dirname6(path42) {
+      function dirname7(path42) {
         const dir = removeSlash(path_1.posix.dirname(path42));
         return dir === "." ? "" : dir;
       }
-      PathExt2.dirname = dirname6;
+      PathExt2.dirname = dirname7;
       function extname7(path42) {
         return path_1.posix.extname(path42);
       }
@@ -193279,11 +193279,11 @@ var {
 } = import_index.default;
 
 // src/version.ts
-var version = "1.2.1";
+var version = "1.2.3";
 var version_default = version;
 
 // ../myst-cli/dist/build/build.js
-var import_node_path57 = __toESM(require("path"), 1);
+var import_node_path56 = __toESM(require("path"), 1);
 
 // ../myst-cli/node_modules/chalk/source/vendor/ansi-styles/index.js
 var ANSI_BACKGROUND_OFFSET = 10;
@@ -194138,6 +194138,15 @@ var zenodo = {
     return `10.5281/zenodo.${url.pathname.replace(/^\/(?:record|badge\/latestdoi)\//, "")}`;
   }
 };
+var biorxiv = {
+  test(url) {
+    return url.hostname.endsWith("biorxiv.org") && !!clumpParts(url).find(validatePart);
+  },
+  parse(url) {
+    var _a6;
+    return (_a6 = clumpParts(url).find(validatePart)) === null || _a6 === void 0 ? void 0 : _a6.replace(/v([\d]*)$/, "");
+  }
+};
 function clumpParts(url) {
   const parts = url.pathname.split("/").filter((p5) => !!p5);
   return parts.slice(0, -1).map((a2, i2) => `${a2}/${parts[i2 + 1]}`);
@@ -194160,7 +194169,7 @@ var idInQuery = {
   }
 };
 var STRICT_RESOLVERS = [doiOrg];
-var DEFAULT_RESOLVERS = [doiOrg, pathParts, elife, zenodo, idInQuery];
+var DEFAULT_RESOLVERS = [doiOrg, biorxiv, pathParts, elife, zenodo, idInQuery];
 
 // ../../node_modules/doi-utils/dist/index.js
 var OPEN_FUNDER_REGISTRY_PREFIX = "10.13039";
@@ -202004,7 +202013,7 @@ function toText(content3) {
   }).join("");
 }
 function copyNode(node3) {
-  return JSON.parse(JSON.stringify(node3));
+  return structuredClone(node3);
 }
 function mergeTextNodes(node3) {
   var _a6;
@@ -202894,6 +202903,7 @@ var RuleId;
   RuleId2["mystLinkValid"] = "myst-link-valid";
   RuleId2["sphinxLinkValid"] = "sphinx-link-valid";
   RuleId2["rridLinkValid"] = "rrid-link-valid";
+  RuleId2["rorLinkValid"] = "ror-link-valid";
   RuleId2["wikipediaLinkValid"] = "wikipedia-link-valid";
   RuleId2["doiLinkValid"] = "doi-link-valid";
   RuleId2["linkResolves"] = "link-resolves";
@@ -202924,6 +202934,191 @@ var RuleId;
   RuleId2["containerChildrenValid"] = "contianer-children-valid";
 })(RuleId || (RuleId = {}));
 
+// ../../node_modules/unist-util-visit-parents/lib/color.js
+function color(d) {
+  return "\x1B[33m" + d + "\x1B[39m";
+}
+
+// ../../node_modules/unist-util-visit-parents/lib/index.js
+var CONTINUE = true;
+var EXIT = false;
+var SKIP = "skip";
+var visitParents = (
+  /**
+   * @type {(
+   *   (<Tree extends Node, Check extends Test>(tree: Tree, test: Check, visitor: BuildVisitor<Tree, Check>, reverse?: boolean | null | undefined) => void) &
+   *   (<Tree extends Node>(tree: Tree, visitor: BuildVisitor<Tree>, reverse?: boolean | null | undefined) => void)
+   * )}
+   */
+  /**
+   * @param {Node} tree
+   * @param {Test} test
+   * @param {Visitor<Node>} visitor
+   * @param {boolean | null | undefined} [reverse]
+   * @returns {void}
+   */
+  function(tree, test2, visitor, reverse) {
+    if (typeof test2 === "function" && typeof visitor !== "function") {
+      reverse = visitor;
+      visitor = test2;
+      test2 = null;
+    }
+    const is4 = convert(test2);
+    const step = reverse ? -1 : 1;
+    factory(tree, void 0, [])();
+    function factory(node3, index4, parents) {
+      const value = node3 && typeof node3 === "object" ? node3 : {};
+      if (typeof value.type === "string") {
+        const name3 = (
+          // `hast`
+          typeof value.tagName === "string" ? value.tagName : (
+            // `xast`
+            typeof value.name === "string" ? value.name : void 0
+          )
+        );
+        Object.defineProperty(visit3, "name", {
+          value: "node (" + color(node3.type + (name3 ? "<" + name3 + ">" : "")) + ")"
+        });
+      }
+      return visit3;
+      function visit3() {
+        let result = [];
+        let subresult;
+        let offset;
+        let grandparents;
+        if (!test2 || is4(node3, index4, parents[parents.length - 1] || null)) {
+          result = toResult(visitor(node3, parents));
+          if (result[0] === EXIT) {
+            return result;
+          }
+        }
+        if (node3.children && result[0] !== SKIP) {
+          offset = (reverse ? node3.children.length : -1) + step;
+          grandparents = parents.concat(node3);
+          while (offset > -1 && offset < node3.children.length) {
+            subresult = factory(node3.children[offset], offset, grandparents)();
+            if (subresult[0] === EXIT) {
+              return subresult;
+            }
+            offset = typeof subresult[1] === "number" ? subresult[1] : offset + step;
+          }
+        }
+        return result;
+      }
+    }
+  }
+);
+function toResult(value) {
+  if (Array.isArray(value)) {
+    return value;
+  }
+  if (typeof value === "number") {
+    return [CONTINUE, value];
+  }
+  return [value];
+}
+
+// ../../node_modules/unist-util-visit/lib/index.js
+var visit = (
+  /**
+   * @type {(
+   *   (<Tree extends Node, Check extends Test>(tree: Tree, test: Check, visitor: BuildVisitor<Tree, Check>, reverse?: boolean | null | undefined) => void) &
+   *   (<Tree extends Node>(tree: Tree, visitor: BuildVisitor<Tree>, reverse?: boolean | null | undefined) => void)
+   * )}
+   */
+  /**
+   * @param {Node} tree
+   * @param {Test} test
+   * @param {Visitor} visitor
+   * @param {boolean | null | undefined} [reverse]
+   * @returns {void}
+   */
+  function(tree, test2, visitor, reverse) {
+    if (typeof test2 === "function" && typeof visitor !== "function") {
+      reverse = visitor;
+      visitor = test2;
+      test2 = null;
+    }
+    visitParents(tree, test2, overload, reverse);
+    function overload(node3, parents) {
+      const parent2 = parents[parents.length - 1];
+      return visitor(
+        node3,
+        parent2 ? parent2.children.indexOf(node3) : null,
+        parent2
+      );
+    }
+  }
+);
+
+// ../myst-common/dist/selectNodes.js
+function isTargetIdentifierNode(node3) {
+  const nonTargetTypes = ["crossReference", "cite", "footnoteDefinition", "footnoteReference"];
+  return !nonTargetTypes.includes(node3.type);
+}
+var hiddenNodes = /* @__PURE__ */ new Set(["comment", "mystComment"]);
+function selectHeadingNodes(mdast2, identifier, maxNodes) {
+  let begin = false;
+  let htmlId = void 0;
+  const nodes = [];
+  visit(mdast2, (node3) => {
+    if (begin && node3.type === "heading" || maxNodes && nodes.length >= maxNodes) {
+      return EXIT;
+    }
+    if (node3.identifier === identifier && node3.type === "heading") {
+      begin = true;
+      htmlId = node3.html_id || node3.identifier;
+    }
+    if (begin) {
+      if (!hiddenNodes.has(node3.type))
+        nodes.push(node3);
+      return SKIP;
+    }
+  });
+  return { htmlId, nodes };
+}
+function selectDefinitionTerm(mdast2, identifier, maxNodes) {
+  var _a6, _b;
+  let begin = false;
+  const nodes = [];
+  visit(mdast2, (node3) => {
+    if (begin && node3.type === "definitionTerm") {
+      if (nodes.length > 1)
+        return EXIT;
+    } else if (begin && node3.type !== "definitionDescription") {
+      return EXIT;
+    }
+    if (node3.identifier === identifier && node3.type === "definitionTerm") {
+      nodes.push(node3);
+      begin = true;
+    }
+    if (begin) {
+      if (node3.type === "definitionDescription")
+        nodes.push(node3);
+      return SKIP;
+    }
+  });
+  return {
+    htmlId: ((_a6 = nodes === null || nodes === void 0 ? void 0 : nodes[0]) === null || _a6 === void 0 ? void 0 : _a6.html_id) || ((_b = nodes === null || nodes === void 0 ? void 0 : nodes[0]) === null || _b === void 0 ? void 0 : _b.identifier),
+    nodes: [{ type: "definitionList", key: "dl", children: nodes.slice(0, maxNodes) }]
+  };
+}
+function selectMdastNodes(mdast2, identifier, maxNodes) {
+  if (maxNodes === 0)
+    return { nodes: [] };
+  const node3 = selectAll(`[identifier=${identifier}],[key=${identifier}]`, mdast2).find((n) => isTargetIdentifierNode(n));
+  if (!node3)
+    return { nodes: [] };
+  switch (node3.type) {
+    case "heading":
+      return selectHeadingNodes(mdast2, identifier, maxNodes);
+    case "definitionTerm":
+      return selectDefinitionTerm(mdast2, identifier, maxNodes);
+    default:
+      return { htmlId: node3.html_id || node3.identifier, nodes: [node3] };
+  }
+}
+
 // ../myst-common/dist/templates.js
 var TemplateKind;
 (function(TemplateKind2) {
@@ -203433,9 +203628,9 @@ var VFile = class {
    *
    * Cannot be set if there’s no `path` yet.
    */
-  set dirname(dirname6) {
+  set dirname(dirname7) {
     assertPath(this.basename, "dirname");
-    this.path = import_path.default.join(dirname6 || "", this.basename);
+    this.path = import_path.default.join(dirname7 || "", this.basename);
   }
   /**
    * Get the basename (including extname) (example: `'index.min.js'`).
@@ -203692,123 +203887,6 @@ function admonitionBlockquoteTransform(tree) {
   });
 }
 
-// ../../node_modules/unist-util-visit-parents/lib/color.js
-function color(d) {
-  return "\x1B[33m" + d + "\x1B[39m";
-}
-
-// ../../node_modules/unist-util-visit-parents/lib/index.js
-var CONTINUE = true;
-var EXIT = false;
-var SKIP = "skip";
-var visitParents = (
-  /**
-   * @type {(
-   *   (<Tree extends Node, Check extends Test>(tree: Tree, test: Check, visitor: BuildVisitor<Tree, Check>, reverse?: boolean | null | undefined) => void) &
-   *   (<Tree extends Node>(tree: Tree, visitor: BuildVisitor<Tree>, reverse?: boolean | null | undefined) => void)
-   * )}
-   */
-  /**
-   * @param {Node} tree
-   * @param {Test} test
-   * @param {Visitor<Node>} visitor
-   * @param {boolean | null | undefined} [reverse]
-   * @returns {void}
-   */
-  function(tree, test2, visitor, reverse) {
-    if (typeof test2 === "function" && typeof visitor !== "function") {
-      reverse = visitor;
-      visitor = test2;
-      test2 = null;
-    }
-    const is4 = convert(test2);
-    const step = reverse ? -1 : 1;
-    factory(tree, void 0, [])();
-    function factory(node3, index4, parents) {
-      const value = node3 && typeof node3 === "object" ? node3 : {};
-      if (typeof value.type === "string") {
-        const name3 = (
-          // `hast`
-          typeof value.tagName === "string" ? value.tagName : (
-            // `xast`
-            typeof value.name === "string" ? value.name : void 0
-          )
-        );
-        Object.defineProperty(visit3, "name", {
-          value: "node (" + color(node3.type + (name3 ? "<" + name3 + ">" : "")) + ")"
-        });
-      }
-      return visit3;
-      function visit3() {
-        let result = [];
-        let subresult;
-        let offset;
-        let grandparents;
-        if (!test2 || is4(node3, index4, parents[parents.length - 1] || null)) {
-          result = toResult(visitor(node3, parents));
-          if (result[0] === EXIT) {
-            return result;
-          }
-        }
-        if (node3.children && result[0] !== SKIP) {
-          offset = (reverse ? node3.children.length : -1) + step;
-          grandparents = parents.concat(node3);
-          while (offset > -1 && offset < node3.children.length) {
-            subresult = factory(node3.children[offset], offset, grandparents)();
-            if (subresult[0] === EXIT) {
-              return subresult;
-            }
-            offset = typeof subresult[1] === "number" ? subresult[1] : offset + step;
-          }
-        }
-        return result;
-      }
-    }
-  }
-);
-function toResult(value) {
-  if (Array.isArray(value)) {
-    return value;
-  }
-  if (typeof value === "number") {
-    return [CONTINUE, value];
-  }
-  return [value];
-}
-
-// ../../node_modules/unist-util-visit/lib/index.js
-var visit = (
-  /**
-   * @type {(
-   *   (<Tree extends Node, Check extends Test>(tree: Tree, test: Check, visitor: BuildVisitor<Tree, Check>, reverse?: boolean | null | undefined) => void) &
-   *   (<Tree extends Node>(tree: Tree, visitor: BuildVisitor<Tree>, reverse?: boolean | null | undefined) => void)
-   * )}
-   */
-  /**
-   * @param {Node} tree
-   * @param {Test} test
-   * @param {Visitor} visitor
-   * @param {boolean | null | undefined} [reverse]
-   * @returns {void}
-   */
-  function(tree, test2, visitor, reverse) {
-    if (typeof test2 === "function" && typeof visitor !== "function") {
-      reverse = visitor;
-      visitor = test2;
-      test2 = null;
-    }
-    visitParents(tree, test2, overload, reverse);
-    function overload(node3, parents) {
-      const parent2 = parents[parents.length - 1];
-      return visitor(
-        node3,
-        parent2 ? parent2.children.indexOf(node3) : null,
-        parent2
-      );
-    }
-  }
-);
-
 // ../myst-transforms/dist/caption.js
 function captionParagraphTransform(tree) {
   visit(tree, "caption", (node3) => {
@@ -206224,9 +206302,6 @@ function fillReferenceEnumerators(node3, enumerator) {
   const num = String(enumerator);
   findAndReplace(node3, { "%s": num, "{number}": num });
 }
-function copyNode2(node3) {
-  return JSON.parse(JSON.stringify(node3));
-}
 function kindFromNode(node3) {
   return node3.type === "container" ? node3.kind : node3.type;
 }
@@ -206262,7 +206337,7 @@ var State2 = class {
       }
       if (node3.identifier) {
         this.targets[node3.identifier] = {
-          node: copyNode2(node3),
+          node: structuredClone(node3),
           kind
         };
       }
@@ -206319,13 +206394,13 @@ var State2 = class {
       node3.resolved = true;
     } else if (kinds.ref.ref && kinds.target.heading) {
       if (noNodeChildren) {
-        node3.children = copyNode2(target.node).children;
+        node3.children = structuredClone(target.node).children;
       }
       node3.resolved = true;
     } else if (kinds.ref.ref && (kinds.target.figure || kinds.target.table)) {
       if (noNodeChildren) {
         const caption3 = select("caption > paragraph", target.node);
-        node3.children = copyNode2(caption3).children;
+        node3.children = structuredClone(caption3).children;
       }
       node3.resolved = true;
     } else if (kinds.ref.numref && kinds.target.figure && target.node.enumerator) {
@@ -208886,16 +208961,16 @@ function collectText(node3, info) {
     start = end + 1;
   }
   let index4 = -1;
-  let join21;
+  let join19;
   while (++index4 < lines.length) {
     if (lines[index4].charCodeAt(lines[index4].length - 1) === 8203 || index4 < lines.length - 1 && lines[index4 + 1].charCodeAt(0) === 8203) {
       result.push(lines[index4]);
-      join21 = void 0;
+      join19 = void 0;
     } else if (lines[index4]) {
-      if (typeof join21 === "number")
-        result.push(join21);
+      if (typeof join19 === "number")
+        result.push(join19);
       result.push(lines[index4]);
-      join21 = 0;
+      join19 = 0;
     } else if (index4 === 0 || index4 === lines.length - 1) {
       result.push(0);
     }
@@ -219747,9 +219822,9 @@ var VFile2 = class {
    * @returns {undefined}
    *   Nothing.
    */
-  set dirname(dirname6) {
+  set dirname(dirname7) {
     assertPath2(this.basename, "dirname");
-    this.path = import_node_path3.default.join(dirname6 || "", this.basename);
+    this.path = import_node_path3.default.join(dirname7 || "", this.basename);
   }
   /**
    * Get the extname (including dot) (example: `'.js'`).
@@ -235876,13 +235951,13 @@ function linksTransform(mdast2, file, opts) {
   var _a6;
   const linkNodes = selectAll((_a6 = opts.selector) !== null && _a6 !== void 0 ? _a6 : "link,card", mdast2);
   linkNodes.forEach((link4) => {
-    formatLinkText(link4);
     if (!link4.urlSource)
       link4.urlSource = link4.url;
     const transform3 = opts.transformers.find((t2) => t2.test(link4.urlSource));
-    if (!transform3)
+    const result = transform3 === null || transform3 === void 0 ? void 0 : transform3.transform(link4, file);
+    formatLinkText(link4);
+    if (!transform3 || result === void 0)
       return;
-    const result = transform3.transform(link4, file);
     if (result) {
       delete link4.error;
       if (transform3.protocol) {
@@ -235927,7 +236002,7 @@ var MystTransformer = class {
     return !!this.mystXRefsList.find((m2) => m2.key && normalizedUri.startsWith(`xref:${m2.key}`));
   }
   transform(link4, file) {
-    var _a6;
+    var _a6, _b;
     const urlSource = removeMystPrefix(link4.urlSource || link4.url, file, link4, TRANSFORM_SOURCE3);
     let url;
     try {
@@ -235978,15 +236053,20 @@ var MystTransformer = class {
       });
       return false;
     }
-    link4.internal = false;
-    link4.url = `${mystXRefs.url}${match3.url}`;
-    link4.dataUrl = `${mystXRefs.url}${match3.data}`;
+    if (((_b = link4.children) === null || _b === void 0 ? void 0 : _b.length) === 1 && link4.children[0].type === "text" && link4.children[0].value === link4.urlSource) {
+      link4.children = [];
+    }
     if (match3.kind === "page") {
-      link4.protocol = "file";
+      link4.url = `${mystXRefs.url}${match3.url}`;
+      link4.dataUrl = `${mystXRefs.url}${match3.data}`;
+      link4.internal = false;
     } else {
       const xref = link4;
       xref.type = "crossReference";
       xref.remote = true;
+      xref.remoteBaseUrl = mystXRefs.url;
+      xref.url = match3.url;
+      xref.dataUrl = match3.data;
       xref.identifier = match3.identifier;
       xref.label = match3.identifier;
       xref.html_id = match3.html_id;
@@ -236151,6 +236231,7 @@ var WikiTransformer = class {
     page = page.replace(/[\s]+/g, "_").replace(/_[_]+/, "_").replace(/(?:^_)|(?:_$)/g, "");
     link4.url = `${result.wiki}wiki/${page}`;
     link4.data = {
+      ...link4.data,
       page,
       wiki: result.wiki,
       lang: result.lang
@@ -236200,15 +236281,60 @@ var RRIDTransformer = class {
       return false;
     }
     link4.url = `${RESOLVER}${rrid}`;
-    link4.data = { rrid };
+    link4.data = { ...link4.data, rrid };
     link4.internal = false;
     updateLinkTextIfEmpty(link4, rrid);
     return true;
   }
 };
 
+// ../myst-transforms/dist/links/ror.js
+var RESOLVER2 = "https://ror.org/";
+var TRANSFORM_SOURCE7 = "LinkTransform:RORTransformer";
+function isValid2(rrid) {
+  return !!rrid;
+}
+function getROR(uri) {
+  if (uri.startsWith("ror:")) {
+    return uri.replace(/^ror:/, "").trim();
+  }
+  if (withoutHttp(uri).startsWith(withoutHttp(RESOLVER2))) {
+    return withoutHttp(uri).replace(withoutHttp(RESOLVER2), "").trim();
+  }
+  return uri.trim();
+}
+var RORTransformer = class {
+  constructor() {
+    this.protocol = "ror";
+  }
+  test(uri) {
+    if (!uri)
+      return false;
+    if (uri.startsWith("ror:"))
+      return true;
+    return withoutHttp(uri).startsWith(withoutHttp(RESOLVER2));
+  }
+  transform(link4, file) {
+    const urlSource = link4.urlSource || link4.url;
+    const ror = getROR(urlSource);
+    if (!isValid2(ror)) {
+      fileWarn(file, `ROR is not valid: ${urlSource}`, {
+        node: link4,
+        source: TRANSFORM_SOURCE7,
+        ruleId: RuleId.rorLinkValid
+      });
+      return false;
+    }
+    link4.url = `${RESOLVER2}${ror}`;
+    link4.data = { ...link4.data, ror };
+    link4.internal = false;
+    updateLinkTextIfEmpty(link4, ror);
+    return true;
+  }
+};
+
 // ../myst-transforms/dist/links/doi.js
-var TRANSFORM_SOURCE7 = "LinkTransform:DOITransformer";
+var TRANSFORM_SOURCE8 = "LinkTransform:DOITransformer";
 var DOITransformer = class {
   constructor() {
     this.protocol = "doi";
@@ -236227,13 +236353,13 @@ var DOITransformer = class {
     if (!doiUrl2) {
       fileError(file, `DOI is not valid: ${urlSource}`, {
         node: link4,
-        source: TRANSFORM_SOURCE7,
+        source: TRANSFORM_SOURCE8,
         ruleId: RuleId.doiLinkValid
       });
       return false;
     }
     link4.url = doiUrl2;
-    link4.data = { doi: doi.normalize(doiUrl2) };
+    link4.data = { ...link4.data, doi: doi.normalize(doiUrl2) };
     link4.internal = false;
     updateLinkTextIfEmpty(link4, "");
     return true;
@@ -236241,7 +236367,7 @@ var DOITransformer = class {
 };
 
 // ../myst-transforms/dist/links/github.js
-var RESOLVER2 = "https://github.com/";
+var RESOLVER3 = "https://github.com/";
 function safeUrlParse(urlSource) {
   try {
     return new URL(`https://${withoutHttp(urlSource)}`);
@@ -236300,7 +236426,7 @@ var GithubTransformer = class {
   test(uri) {
     if (!uri)
       return false;
-    return withoutHttp(uri).startsWith(withoutHttp(RESOLVER2));
+    return withoutHttp(uri).startsWith(withoutHttp(RESOLVER3));
   }
   transform(link4, file) {
     const urlSource = link4.urlSource || link4.url;
@@ -236309,7 +236435,7 @@ var GithubTransformer = class {
       return false;
     }
     const [defaultText, data] = parsed;
-    link4.data = data;
+    link4.data = { ...link4.data, ...data };
     link4.internal = false;
     updateLinkTextIfEmpty(link4, defaultText);
     return true;
@@ -236324,7 +236450,7 @@ function checkLinkTextTransform(mdast2, vfile2) {
   linkNodes.forEach((node3) => {
     var _a6;
     if (!toText(node3.children) && !select("image", node3)) {
-      fileWarn(vfile2, `Link text is empty for <${(_a6 = node3.urlSource) !== null && _a6 !== void 0 ? _a6 : node3.url}>`, {
+      fileWarn(vfile2, `Link text is empty for <${(_a6 = node3.urlSource) !== null && _a6 !== void 0 ? _a6 : node3.url}${node3.identifier ? `#${node3.identifier}` : ""}>`, {
         node: node3,
         ruleId: RuleId.linkTextExists
       });
@@ -236892,7 +237018,7 @@ function getDefaultNumberedReferenceTemplate(kind) {
   const domain = kind.includes(":") ? kind.split(":")[1] : kind;
   return `${domain.slice(0, 1).toUpperCase()}${domain.slice(1)}\xA0%s`;
 }
-function getDefaultNamedReferenceTemplate(kind, hasTitle) {
+function getDefaultNamedReferenceTemplate(kind = "unknown", hasTitle) {
   const domain = kind.includes(":") ? kind.split(":")[1] : kind;
   const name3 = `${domain.slice(0, 1).toUpperCase()}${domain.slice(1)}`;
   switch (kind) {
@@ -237046,23 +237172,21 @@ function initializeTargetCounts(numbering, initialCounts, tree) {
 }
 var ReferenceState = class {
   constructor(filePath, opts) {
-    var _a6;
+    var _a6, _b;
     this.numbering = fillNumbering(opts === null || opts === void 0 ? void 0 : opts.numbering, DEFAULT_NUMBERING);
     this.initialCounts = opts === null || opts === void 0 ? void 0 : opts.targetCounts;
     this.targetCounts = initializeTargetCounts(this.numbering, this.initialCounts);
     this.identifiers = (_a6 = opts === null || opts === void 0 ? void 0 : opts.identifiers) !== null && _a6 !== void 0 ? _a6 : [];
     this.targets = {};
-    this.vfile = opts === null || opts === void 0 ? void 0 : opts.vfile;
+    this.vfile = (_b = opts === null || opts === void 0 ? void 0 : opts.vfile) !== null && _b !== void 0 ? _b : new VFile();
     this.filePath = filePath;
     this.url = opts === null || opts === void 0 ? void 0 : opts.url;
     this.dataUrl = opts === null || opts === void 0 ? void 0 : opts.dataUrl;
     this.title = opts === null || opts === void 0 ? void 0 : opts.title;
   }
   addTarget(node3) {
-    const possibleIncorrectNode = node3;
-    if (possibleIncorrectNode.type === "crossReference" || possibleIncorrectNode.type === "cite" || possibleIncorrectNode.type === "footnoteDefinition" || possibleIncorrectNode.type === "footnoteReference") {
+    if (!isTargetIdentifierNode(node3))
       return;
-    }
     const kind = kindFromNode2(node3);
     const numberNode = shouldEnumerate(node3, kind, this.numbering);
     if (numberNode && !node3.enumerator) {
@@ -237134,6 +237258,12 @@ var ReferenceState = class {
     node3.enumerator = enumerator;
     return enumerator;
   }
+  resolveStateProvider(identifier, page) {
+    if (!identifier || !page || page !== this.filePath)
+      return;
+    if (this.getTarget(identifier) || this.getFileTarget(identifier))
+      return this;
+  }
   getIdentifiers() {
     return [...this.identifiers, ...Object.keys(this.targets)];
   }
@@ -237205,7 +237335,7 @@ function warnNodeTargetNotFound(node3, vfile2) {
   });
 }
 var MultiPageReferenceResolver = class {
-  constructor(states, filePath, vfile2) {
+  constructor(states, filePath, vfile2 = new VFile()) {
     this.states = states;
     this.filePath = filePath;
     this.vfile = vfile2;
@@ -237213,19 +237343,19 @@ var MultiPageReferenceResolver = class {
   resolveStateProvider(identifier, page) {
     if (!identifier)
       return void 0;
-    const pageXRefs = this.states.find((state) => {
+    const resolvedState = this.states.find((state) => {
       if (page && page !== state.filePath)
         return false;
       return !!state.getTarget(identifier) || !!state.getFileTarget(identifier);
     });
-    return pageXRefs;
+    return resolvedState;
   }
   getIdentifiers() {
     return this.states.map((state) => state.getIdentifiers()).flat();
   }
   getTarget(identifier, page) {
-    const pageXRefs = this.resolveStateProvider(identifier, page);
-    return pageXRefs === null || pageXRefs === void 0 ? void 0 : pageXRefs.getTarget(identifier);
+    const state = this.resolveStateProvider(identifier, page);
+    return state === null || state === void 0 ? void 0 : state.getTarget(identifier);
   }
   getFileTarget(identifier) {
     if (!identifier)
@@ -237233,16 +237363,16 @@ var MultiPageReferenceResolver = class {
     return this.states.map((state) => state.getFileTarget(identifier)).find((file) => !!file);
   }
   resolveReferenceContent(node3) {
-    const pageXRefs = this.resolveStateProvider(node3.identifier);
-    if (!pageXRefs) {
+    const state = this.resolveStateProvider(node3.identifier);
+    if (!state) {
       warnNodeTargetNotFound(node3, this.vfile);
       return;
     }
-    pageXRefs === null || pageXRefs === void 0 ? void 0 : pageXRefs.resolveReferenceContent(node3);
-    if (node3.resolved && (pageXRefs === null || pageXRefs === void 0 ? void 0 : pageXRefs.filePath) !== this.filePath) {
+    state === null || state === void 0 ? void 0 : state.resolveReferenceContent(node3);
+    if (node3.resolved && (state === null || state === void 0 ? void 0 : state.filePath) !== this.filePath) {
       node3.remote = true;
-      node3.url = pageXRefs.url || void 0;
-      node3.dataUrl = pageXRefs.dataUrl || void 0;
+      node3.url = state.url || void 0;
+      node3.dataUrl = state.dataUrl || void 0;
     }
   }
 };
@@ -237359,30 +237489,40 @@ var resolveReferenceLinksTransform = (tree, opts) => {
 };
 var resolveUnlinkedCitations = (tree, opts) => {
   selectAll("cite", tree).forEach((node3) => {
-    var _a6;
+    var _a6, _b;
     const cite3 = node3;
     if (!cite3.error)
       return;
     const reference = normalizeLabel(cite3.label);
-    const target = (_a6 = opts.state.getTarget(cite3.label)) !== null && _a6 !== void 0 ? _a6 : opts.state.getTarget(reference === null || reference === void 0 ? void 0 : reference.identifier);
-    const fileTarget = opts.state.getFileTarget(reference === null || reference === void 0 ? void 0 : reference.identifier);
-    if (!(target || fileTarget) || !reference) {
-      if (!opts.state.vfile)
+    if (reference) {
+      const target = (_a6 = opts.state.getTarget(cite3.label)) !== null && _a6 !== void 0 ? _a6 : opts.state.getTarget(reference.identifier);
+      const fileTarget = opts.state.getFileTarget(reference.identifier);
+      if (target || fileTarget) {
+        const xref = cite3;
+        xref.type = "crossReference";
+        xref.identifier = reference.identifier;
+        xref.label = reference.label;
+        delete cite3.error;
+        if (target)
+          implicitTargetWarning(target, node3, opts);
         return;
-      fileWarn(opts.state.vfile, `Could not link citation with label "${cite3.label}".`, {
-        node: node3,
-        source: TRANSFORM_NAME2,
-        ruleId: RuleId.referenceTargetResolves
-      });
+      }
+    }
+    const transformer = (_b = opts.transformers) === null || _b === void 0 ? void 0 : _b.find((t2) => t2.test(cite3.label));
+    if (transformer) {
+      const link4 = cite3;
+      link4.type = "link";
+      link4.url = cite3.label;
+      delete cite3.error;
       return;
     }
-    const xref = cite3;
-    xref.type = "crossReference";
-    xref.identifier = reference.identifier;
-    xref.label = reference.label;
-    delete cite3.error;
-    if (target)
-      implicitTargetWarning(target, node3, opts);
+    if (!opts.state.vfile)
+      return;
+    fileWarn(opts.state.vfile, `Could not link citation with label "${cite3.label}".`, {
+      node: node3,
+      source: TRANSFORM_NAME2,
+      ruleId: RuleId.referenceTargetResolves
+    });
   });
 };
 function unnestCrossReferencesTransform(tree) {
@@ -237403,14 +237543,17 @@ function unnestCrossReferencesTransform(tree) {
 }
 var resolveCrossReferencesTransform = (tree, opts) => {
   visit(tree, "crossReference", (node3) => {
-    if (node3.protocol)
+    const { protocol } = node3;
+    if (protocol && protocol !== "file")
       return;
     opts.state.resolveReferenceContent(node3);
   });
 };
-var resolveReferencesTransform = (tree, file, opts) => {
+var resolveLinksAndCitationsTransform = (tree, opts) => {
   resolveReferenceLinksTransform(tree, opts);
   resolveUnlinkedCitations(tree, opts);
+};
+var resolveReferencesTransform = (tree, file, opts) => {
   resolveCrossReferencesTransform(tree, opts);
   addContainerCaptionNumbersTransform(tree, file, opts);
   unnestCrossReferencesTransform(tree);
@@ -240340,11 +240483,11 @@ function reloadAllConfigsForCurrentSite(session) {
 }
 
 // ../myst-cli/dist/project/load.js
-var import_node_fs15 = __toESM(require("fs"), 1);
+var import_node_fs16 = __toESM(require("fs"), 1);
 var import_node_path22 = require("path");
 
 // ../myst-cli/dist/process/citations.js
-var import_node_fs3 = __toESM(require("fs"), 1);
+var import_node_fs4 = __toESM(require("fs"), 1);
 
 // ../citation-js-utils/dist/index.js
 var import_core4 = __toESM(require_lib6(), 1);
@@ -240554,6 +240697,7 @@ async function getCitationRenderers(data) {
 }
 
 // ../myst-cli/dist/session/cache.js
+var import_node_fs3 = __toESM(require("fs"), 1);
 var import_node_path8 = __toESM(require("path"), 1);
 function castSession(session) {
   const cache = session;
@@ -240577,6 +240721,35 @@ function castSession(session) {
   };
   return cache;
 }
+function cachePath(session, filename) {
+  return import_node_path8.default.join(session.buildPath(), "cache", filename);
+}
+function writeToCache(session, filename, data) {
+  const file = cachePath(session, filename);
+  session.log.debug(`Writing cache file: ${file}`);
+  writeFileToFolder(file, data);
+}
+function checkCache(session, filename, opts) {
+  const file = cachePath(session, filename);
+  if (!import_node_fs3.default.existsSync(file)) {
+    session.log.debug(`Cache file not found: ${file}`);
+    return false;
+  }
+  const { ctimeMs } = import_node_fs3.default.lstatSync(file);
+  const age = (Date.now() - ctimeMs) / (1e3 * 60 * 60 * 24);
+  if ((opts === null || opts === void 0 ? void 0 : opts.maxAge) != null && age > opts.maxAge) {
+    session.log.debug(`Cache file has expired (age: ${age.toFixed(3)} days, max: ${opts.maxAge} days): ${file}`);
+    return false;
+  }
+  return true;
+}
+function loadFromCache(session, filename, opts) {
+  if (!checkCache(session, filename, opts))
+    return;
+  const file = cachePath(session, filename);
+  session.log.debug(`Loading cache file: ${file}`);
+  return import_node_fs3.default.readFileSync(file).toString();
+}
 
 // ../myst-cli/dist/process/citations.js
 async function loadBibTeXCitationRenderers(session, path42) {
@@ -240592,7 +240765,7 @@ async function loadBibTeXCitationRenderers(session, path42) {
     session.log.debug(`Fetched citations from "${path42}" successfully.`);
   } else {
     session.log.debug(`Loading citations at "${path42}"`);
-    data = import_node_fs3.default.readFileSync(path42).toString();
+    data = import_node_fs4.default.readFileSync(path42).toString();
   }
   const csl = parseBibTeX(data);
   const renderer = await getCitationRenderers(csl);
@@ -240624,7 +240797,7 @@ function combineProjectCitationRenderers(session, projectPath) {
 }
 
 // ../myst-cli/dist/process/file.js
-var import_node_fs11 = __toESM(require("fs"), 1);
+var import_node_fs12 = __toESM(require("fs"), 1);
 var import_node_path18 = __toESM(require("path"), 1);
 var import_node_crypto2 = require("crypto");
 
@@ -279263,7 +279436,7 @@ function colon_fence_rule(state, startLine, endLine, silent) {
 }
 
 // ../../node_modules/markdown-it-dollarmath/dist/index.js
-var import_utils37 = __toESM(require_utils2(), 1);
+var import_utils38 = __toESM(require_utils2(), 1);
 var OptionDefaults = {
   allow_space: true,
   allow_digits: true,
@@ -279273,7 +279446,7 @@ var OptionDefaults = {
     return label.replace(/[\s]+/g, "-");
   },
   renderer(content3) {
-    return (0, import_utils37.escapeHtml)(content3);
+    return (0, import_utils38.escapeHtml)(content3);
   },
   labelRenderer(label) {
     return `<a href="#${label}" class="mathlabel" title="Permalink to this equation">\xB6</a>`;
@@ -279975,10 +280148,12 @@ var embedDirective = {
   },
   options: {
     "remove-input": {
-      type: Boolean
+      type: Boolean,
+      doc: "If embedding a Jupyter Notebook cell, remove the input of the cell."
     },
     "remove-output": {
-      type: Boolean
+      type: Boolean,
+      doc: "If embedding a Jupyter Notebook cell, remove the output of the cell."
     }
   },
   run(data) {
@@ -287224,13 +287399,13 @@ function parseMyst(session, content3, file, opts) {
 var import_nbtx2 = __toESM(require_cjs2(), 1);
 
 // ../myst-cli/dist/transforms/images.js
-var import_node_fs10 = __toESM(require("fs"), 1);
+var import_node_fs11 = __toESM(require("fs"), 1);
 var import_mime_types = __toESM(require_mime_types(), 1);
 var import_node_path17 = __toESM(require("path"), 1);
 var import_nbtx = __toESM(require_cjs2(), 1);
 
 // ../myst-cli/dist/version.js
-var version2 = "1.2.1";
+var version2 = "1.2.3";
 var version_default2 = version2;
 
 // ../myst-cli/dist/utils/headers.js
@@ -287240,7 +287415,7 @@ var EXT_REQUEST_HEADERS = {
 };
 
 // ../myst-cli/dist/utils/resolveExtension.js
-var import_node_fs4 = __toESM(require("fs"), 1);
+var import_node_fs5 = __toESM(require("fs"), 1);
 var import_node_path9 = __toESM(require("path"), 1);
 var ImageExtensions;
 (function(ImageExtensions2) {
@@ -287263,10 +287438,10 @@ function isValidFile(file) {
   return VALID_FILE_EXTENSIONS.includes(import_node_path9.default.extname(file).toLowerCase());
 }
 function resolveExtension(file) {
-  if (import_node_fs4.default.existsSync(file) && !isDirectory(file))
+  if (import_node_fs5.default.existsSync(file) && !isDirectory(file))
     return file;
   const extensions = VALID_FILE_EXTENSIONS.concat(VALID_FILE_EXTENSIONS.map((ext2) => ext2.toUpperCase()));
-  return extensions.map((ext2) => `${file}${ext2}`).find((fileExt) => import_node_fs4.default.existsSync(fileExt));
+  return extensions.map((ext2) => `${file}${ext2}`).find((fileExt) => import_node_fs5.default.existsSync(fileExt));
 }
 
 // ../myst-cli/dist/utils/check.js
@@ -287342,27 +287517,27 @@ async function checkNodeVersion(session) {
 }
 
 // ../myst-cli/dist/utils/createTempFolder.js
-var import_node_fs5 = __toESM(require("fs"), 1);
+var import_node_fs6 = __toESM(require("fs"), 1);
 var import_node_path10 = __toESM(require("path"), 1);
 var import_os = __toESM(require("os"), 1);
 function createTempFolder(session) {
   if (!session)
-    return import_node_fs5.default.mkdtempSync(import_node_path10.default.join(import_os.default.tmpdir(), "myst"));
+    return import_node_fs6.default.mkdtempSync(import_node_path10.default.join(import_os.default.tmpdir(), "myst"));
   const tempLocation = import_node_path10.default.join(session.buildPath(), "temp");
-  import_node_fs5.default.mkdirSync(tempLocation, { recursive: true });
-  return import_node_fs5.default.mkdtempSync(import_node_path10.default.join(tempLocation, "myst"));
+  import_node_fs6.default.mkdirSync(tempLocation, { recursive: true });
+  return import_node_fs6.default.mkdtempSync(import_node_path10.default.join(tempLocation, "myst"));
 }
 
 // ../myst-cli/dist/utils/fileInfo.js
 var import_node_path11 = __toESM(require("path"), 1);
-function input2name(input3, allowed, join21) {
-  let name3 = `\xB6${input3}`.toLowerCase().split("").map((char) => allowed.test(char) ? char : "\xB6").join("").split("").reduce((p5, n) => p5.charAt(p5.length - 1) === "\xB6" && n === "\xB6" ? p5 : p5 + n).slice(1).replace(/¶/g, join21);
-  if (join21) {
-    name3 = name3.replace(new RegExp(`${join21}+`, "g"), join21);
+function input2name(input3, allowed, join19) {
+  let name3 = `\xB6${input3}`.toLowerCase().split("").map((char) => allowed.test(char) ? char : "\xB6").join("").split("").reduce((p5, n) => p5.charAt(p5.length - 1) === "\xB6" && n === "\xB6" ? p5 : p5 + n).slice(1).replace(/¶/g, join19);
+  if (join19) {
+    name3 = name3.replace(new RegExp(`${join19}+`, "g"), join19);
   }
-  if (name3.charAt(0) === join21)
+  if (name3.charAt(0) === join19)
     name3 = name3.slice(1);
-  if (name3.charAt(name3.length - 1) === join21)
+  if (name3.charAt(name3.length - 1) === join19)
     name3 = name3.slice(0, name3.length - 1);
   return name3;
 }
@@ -287399,7 +287574,7 @@ function fileInfo2(file, pageSlugs) {
 }
 
 // ../myst-cli/dist/utils/getAllBibtexFiles.js
-var import_node_fs6 = __toESM(require("fs"), 1);
+var import_node_fs7 = __toESM(require("fs"), 1);
 var import_node_path12 = __toESM(require("path"), 1);
 
 // ../myst-cli/dist/utils/shouldIgnoreFile.js
@@ -287411,7 +287586,7 @@ function shouldIgnoreFile(session, file) {
 // ../myst-cli/dist/utils/getAllBibtexFiles.js
 function getAllBibTexFilesOnPath(session, dir) {
   let bibFiles = [];
-  const content3 = import_node_fs6.default.readdirSync(dir);
+  const content3 = import_node_fs7.default.readdirSync(dir);
   content3.map((file) => import_node_path12.default.join(dir, file)).filter((file) => {
     const isDir = isDirectory(file);
     if (!isDir && import_node_path12.default.extname(file) === ".bib") {
@@ -287442,7 +287617,7 @@ function removeExtension(file) {
 }
 
 // ../myst-cli/dist/utils/toc.js
-var import_node_fs7 = __toESM(require("fs"), 1);
+var import_node_fs8 = __toESM(require("fs"), 1);
 var import_node_path14 = require("path");
 var TOC_FORMAT = "jb-book";
 var TOC_FORMAT_ARTICLE = "jb-article";
@@ -287465,7 +287640,7 @@ function upgradeOldJupyterBookTOC(oldTOC) {
 }
 function readTOC(log, opts) {
   const filename = (0, import_node_path14.join)((opts === null || opts === void 0 ? void 0 : opts.path) || ".", (opts === null || opts === void 0 ? void 0 : opts.filename) || "_toc.yml");
-  const toc = js_yaml_default.load(import_node_fs7.default.readFileSync(filename).toString());
+  const toc = js_yaml_default.load(import_node_fs8.default.readFileSync(filename).toString());
   if (Array.isArray(toc)) {
     try {
       const old = upgradeOldJupyterBookTOC(toc);
@@ -287489,7 +287664,7 @@ function readTOC(log, opts) {
 function validateTOC(session, path42) {
   const filename = tocFile(path42);
   const { dir, base: base5 } = (0, import_node_path14.parse)(filename);
-  if (!import_node_fs7.default.existsSync(filename))
+  if (!import_node_fs8.default.existsSync(filename))
     return false;
   try {
     readTOC(silentLogger(), { filename: base5, path: dir });
@@ -287523,7 +287698,7 @@ __export(imagemagick_exports, {
   isImageMagickAvailable: () => isImageMagickAvailable,
   isWebpAvailable: () => isWebpAvailable
 });
-var import_node_fs8 = __toESM(require("fs"), 1);
+var import_node_fs9 = __toESM(require("fs"), 1);
 var import_node_path15 = __toESM(require("path"), 1);
 var import_which = __toESM(require_lib15(), 1);
 function isImageMagickAvailable() {
@@ -287559,14 +287734,14 @@ function createImagemagikLogger(session) {
   return logger;
 }
 async function extractFirstFrameOfGif(session, gif, writeFolder) {
-  if (!import_node_fs8.default.existsSync(gif))
+  if (!import_node_fs9.default.existsSync(gif))
     return null;
   const { name: name3, ext: ext2 } = import_node_path15.default.parse(gif);
   if (ext2 !== ".gif")
     return null;
   const pngFile = `${name3}.png`;
   const png = import_node_path15.default.join(writeFolder, pngFile);
-  if (import_node_fs8.default.existsSync(png)) {
+  if (import_node_fs9.default.existsSync(png)) {
     session.log.debug(`Cached file found for extracted GIF: ${gif}`);
   } else {
     const executable = `convert -density 600 -colorspace RGB ${gif}[0] ${png}`;
@@ -287584,7 +287759,7 @@ async function extractFirstFrameOfGif(session, gif, writeFolder) {
   return pngFile;
 }
 async function convert2(inputExtension, outputExtension, session, input3, writeFolder, options) {
-  if (!import_node_fs8.default.existsSync(input3))
+  if (!import_node_fs9.default.existsSync(input3))
     return null;
   const { name: name3, ext: ext2 } = import_node_path15.default.parse(input3);
   if (ext2 !== inputExtension)
@@ -287593,7 +287768,7 @@ async function convert2(inputExtension, outputExtension, session, input3, writeF
   const output2 = import_node_path15.default.join(writeFolder, filename);
   const inputFormatUpper = inputExtension.slice(1).toUpperCase();
   const outputFormatUpper = outputExtension.slice(1).toUpperCase();
-  if (import_node_fs8.default.existsSync(output2)) {
+  if (import_node_fs9.default.existsSync(output2)) {
     session.log.debug(`Cached file found for converted ${inputFormatUpper}: ${input3}`);
     return filename;
   } else {
@@ -287608,18 +287783,18 @@ async function convert2(inputExtension, outputExtension, session, input3, writeF
       });
       return null;
     }
-    if (import_node_fs8.default.existsSync(output2))
+    if (import_node_fs9.default.existsSync(output2))
       return filename;
     const maybeNumbered = output2.replace(new RegExp(`\\${outputExtension}$`), `-0${outputExtension}`);
-    if (import_node_fs8.default.existsSync(maybeNumbered)) {
-      import_node_fs8.default.renameSync(maybeNumbered, output2);
+    if (import_node_fs9.default.existsSync(maybeNumbered)) {
+      import_node_fs9.default.renameSync(maybeNumbered, output2);
       return filename;
     }
   }
   return null;
 }
 async function convertImageToWebp(session, image6, { quality = 80, overwrite = false, maxSize = LARGE_IMAGE }) {
-  if (!import_node_fs8.default.existsSync(image6)) {
+  if (!import_node_fs9.default.existsSync(image6)) {
     session.log.debug(`Image does not exist: "${image6}"`);
     return null;
   }
@@ -287629,7 +287804,7 @@ async function convertImageToWebp(session, image6, { quality = 80, overwrite = f
     session.log.debug(`Skipping webp conversion of "${image6}"`);
     return null;
   }
-  const { size } = import_node_fs8.default.statSync(image6);
+  const { size } = import_node_fs9.default.statSync(image6);
   if (size > maxSize && !(imageExt === ".pdf" || imageExt === ".tiff")) {
     const inMB = (size / (1024 * 1024)).toLocaleString(void 0, {
       minimumFractionDigits: 2,
@@ -287638,11 +287813,11 @@ async function convertImageToWebp(session, image6, { quality = 80, overwrite = f
     addWarningForFile(session, image6, `Image is too large (${inMB} MB) to convert to webp (build will be slow).`, "warn", { ruleId: RuleId.imageFormatOptimizes });
     return null;
   }
-  const dirname6 = import_node_path15.default.dirname(image6);
+  const dirname7 = import_node_path15.default.dirname(image6);
   const basename3 = import_node_path15.default.basename(image6, imageExt);
-  const png = import_node_path15.default.join(dirname6, `${basename3}.png`);
-  const webp = import_node_path15.default.join(dirname6, `${basename3}.webp`);
-  if (!overwrite && import_node_fs8.default.existsSync(webp)) {
+  const png = import_node_path15.default.join(dirname7, `${basename3}.png`);
+  const webp = import_node_path15.default.join(dirname7, `${basename3}.webp`);
+  if (!overwrite && import_node_fs9.default.existsSync(webp)) {
     session.log.debug(`Image is already converted ${webp}`);
     return `${basename3}.webp`;
   }
@@ -287706,7 +287881,7 @@ __export(inkscape_exports, {
   convert: () => convert3,
   isInkscapeAvailable: () => isInkscapeAvailable
 });
-var import_node_fs9 = __toESM(require("fs"), 1);
+var import_node_fs10 = __toESM(require("fs"), 1);
 var import_node_path16 = __toESM(require("path"), 1);
 var import_which2 = __toESM(require_lib15(), 1);
 function createInkscpapeLogger(session) {
@@ -287732,7 +287907,7 @@ function isInkscapeAvailable() {
   return import_which2.default.sync("inkscape", { nothrow: true });
 }
 async function convert3(inputExtension, outputExtension, session, input3, writeFolder) {
-  if (!import_node_fs9.default.existsSync(input3))
+  if (!import_node_fs10.default.existsSync(input3))
     return null;
   const { name: name3, ext: ext2 } = import_node_path16.default.parse(input3);
   if (ext2 !== inputExtension)
@@ -287741,7 +287916,7 @@ async function convert3(inputExtension, outputExtension, session, input3, writeF
   const output2 = import_node_path16.default.join(writeFolder, filename);
   const inputFormatUpper = inputExtension.slice(1).toUpperCase();
   const outputFormat = outputExtension.slice(1);
-  if (import_node_fs9.default.existsSync(output2)) {
+  if (import_node_fs10.default.existsSync(output2)) {
     session.log.debug(`Cached file found for converted ${inputFormatUpper}: ${input3}`);
   } else {
     const inkscapeCommand = `inkscape ${input3} --export-area-drawing --export-type=${outputFormat} --export-filename=${output2}`;
@@ -287776,16 +287951,16 @@ async function writeBase64(session, writeFolder, data, contentType) {
   const file = `${hash}${ext2}`;
   const filePath = import_node_path17.default.join(writeFolder, file);
   session.log.debug(`Writing binary output file ${justData.length} bytes to ${filePath}`);
-  if (!import_node_fs10.default.existsSync(writeFolder))
-    import_node_fs10.default.mkdirSync(writeFolder, { recursive: true });
-  import_node_fs10.default.writeFileSync(filePath, justData, {
+  if (!import_node_fs11.default.existsSync(writeFolder))
+    import_node_fs11.default.mkdirSync(writeFolder, { recursive: true });
+  import_node_fs11.default.writeFileSync(filePath, justData, {
     encoding: "base64"
   });
   return file;
 }
 async function downloadAndSaveImage(session, url, file, fileFolder) {
-  const exists2 = import_node_fs10.default.existsSync(fileFolder);
-  const fileMatch = exists2 && import_node_fs10.default.readdirSync(fileFolder).find((f3) => import_node_path17.default.parse(f3).name === file);
+  const exists2 = import_node_fs11.default.existsSync(fileFolder);
+  const fileMatch = exists2 && import_node_fs11.default.readdirSync(fileFolder).find((f3) => import_node_path17.default.parse(f3).name === file);
   if (exists2 && fileMatch) {
     session.log.debug(`Cached image found for: ${url}...`);
     return fileMatch;
@@ -287803,9 +287978,9 @@ async function downloadAndSaveImage(session, url, file, fileFolder) {
     if (!contentType.startsWith("image/")) {
       throw new Error(`ContentType "${contentType}" is not an image`);
     }
-    if (!import_node_fs10.default.existsSync(fileFolder))
-      import_node_fs10.default.mkdirSync(fileFolder, { recursive: true });
-    const fileStream = import_node_fs10.default.createWriteStream(`${filePath}.${extension}`);
+    if (!import_node_fs11.default.existsSync(fileFolder))
+      import_node_fs11.default.mkdirSync(fileFolder, { recursive: true });
+    const fileStream = import_node_fs11.default.createWriteStream(`${filePath}.${extension}`);
     await new Promise((resolve7, reject) => {
       if (!res.body) {
         reject(`no response body from ${url}`);
@@ -287844,7 +288019,7 @@ async function saveImageInStaticFolder(session, urlSource, sourceFile, writeFold
   let file;
   if (isUrl(urlSource)) {
     file = await downloadAndSaveImage(session, urlSource, computeHash(urlSource), writeFolder);
-  } else if (import_node_fs10.default.existsSync(imageLocalFile)) {
+  } else if (import_node_fs11.default.existsSync(imageLocalFile)) {
     if (import_node_path17.default.resolve(import_node_path17.default.dirname(imageLocalFile)) === import_node_path17.default.resolve(writeFolder)) {
       file = import_node_path17.default.basename(imageLocalFile);
     } else {
@@ -287871,9 +288046,9 @@ function transformImagesToEmbed(mdast2) {
   const images = selectAll("image", mdast2);
   images.forEach((image6) => {
     var _a6;
-    if (image6.url.startsWith("#")) {
+    if (image6.url.startsWith("xref:") || image6.url.startsWith("#")) {
       image6.type = "embed";
-      image6.source = { label: image6.url.substring(1) };
+      image6.source = { label: image6.url.startsWith("xref:") ? image6.url : image6.url.substring(1) };
       image6["remove-input"] = (_a6 = image6["remove-input"]) !== null && _a6 !== void 0 ? _a6 : true;
       delete image6.url;
       return;
@@ -287886,7 +288061,7 @@ function transformImagesWithoutExt(session, mdast2, file, opts) {
     var _a6;
     const wildcardRegex = /\.\*$/;
     const imagePath = import_node_path17.default.join(import_node_path17.default.dirname(file), image6.url).replace(wildcardRegex, "");
-    if (!import_node_fs10.default.existsSync(imagePath)) {
+    if (!import_node_fs11.default.existsSync(imagePath)) {
       const sortedExtensions = [
         // Valid extensions
         ...(_a6 = opts === null || opts === void 0 ? void 0 : opts.imageExtensions) !== null && _a6 !== void 0 ? _a6 : [],
@@ -287895,7 +288070,7 @@ function transformImagesWithoutExt(session, mdast2, file, opts) {
         // All known extensions
         ...KNOWN_IMAGE_EXTENSIONS
       ];
-      const extension = sortedExtensions.find((ext2) => import_node_fs10.default.existsSync(imagePath + ext2));
+      const extension = sortedExtensions.find((ext2) => import_node_fs11.default.existsSync(imagePath + ext2));
       if (extension) {
         const replacement = image6.url.replace(wildcardRegex, "") + extension;
         session.log.debug(`Resolving ${image6.url} to ${replacement}`);
@@ -288127,9 +288302,9 @@ async function transformWebp(session, opts) {
   const postData = (_a6 = cache.$getMdast(opts.file)) === null || _a6 === void 0 ? void 0 : _a6.post;
   if (!postData)
     throw new Error(`Expected mdast to be processed and transformed for ${file}`);
-  if (!import_node_fs10.default.existsSync(imageWriteFolder))
+  if (!import_node_fs11.default.existsSync(imageWriteFolder))
     return;
-  const writeFolderContents = import_node_fs10.default.readdirSync(imageWriteFolder);
+  const writeFolderContents = import_node_fs11.default.readdirSync(imageWriteFolder);
   const { mdast: mdast2, frontmatter } = postData;
   const images = selectAll("image", mdast2);
   await Promise.all(images.map(async (image6) => {
@@ -288376,7 +288551,7 @@ async function processNotebook(session, file, content3) {
 }
 
 // ../myst-cli/dist/process/file.js
-function checkCache(cache, content3, file) {
+function checkCache2(cache, content3, file) {
   const sha256 = (0, import_node_crypto2.createHash)("sha256").update(content3).digest("hex");
   cache.store.dispatch(watch.actions.markFileChanged({ path: file, sha256 }));
   const mdast2 = cache.$getMdast(file);
@@ -288428,8 +288603,8 @@ async function loadFile(session, file, projectPath, extension, opts) {
   }
   location4 = location4.replaceAll("\\", "/");
   try {
-    const content3 = import_node_fs11.default.readFileSync(file).toString();
-    const { sha256, useCache } = checkCache(cache, content3, file);
+    const content3 = import_node_fs12.default.readFileSync(file).toString();
+    const { sha256, useCache } = checkCache2(cache, content3, file);
     if (useCache) {
       session.log.debug(toc(`loadFile: ${file} already loaded.`));
       return (_a6 = cache.$getMdast(file)) === null || _a6 === void 0 ? void 0 : _a6.pre;
@@ -288483,7 +288658,7 @@ ${error === null || error === void 0 ? void 0 : error.stack}
   return (_b = cache.$getMdast(file)) === null || _b === void 0 ? void 0 : _b.pre;
 }
 async function bibFilesInDir(session, dir, load2 = true) {
-  const bibFiles = await Promise.all(import_node_fs11.default.readdirSync(dir).map(async (f3) => {
+  const bibFiles = await Promise.all(import_node_fs12.default.readdirSync(dir).map(async (f3) => {
     if (import_node_path18.default.extname(f3).toLowerCase() === ".bib") {
       const bibFile = import_node_path18.default.join(dir, f3);
       if (load2)
@@ -288526,7 +288701,7 @@ async function getRawFrontmatterFromFile(session, file, projectPath) {
 }
 
 // ../myst-cli/dist/project/fromPath.js
-var import_node_fs13 = __toESM(require("fs"), 1);
+var import_node_fs14 = __toESM(require("fs"), 1);
 var import_node_path20 = require("path");
 
 // ../../node_modules/glob/node_modules/minimatch/dist/mjs/index.js
@@ -294911,7 +295086,7 @@ var glob = Object.assign(glob_, {
 glob.glob = glob;
 
 // ../myst-cli/dist/project/fromTOC.js
-var import_node_fs12 = __toESM(require("fs"), 1);
+var import_node_fs13 = __toESM(require("fs"), 1);
 var import_node_path19 = require("path");
 function pagesFromChapters(session, path42, chapters, pages = [], level = 1, pageSlugs) {
   const filename = tocFile(path42);
@@ -294936,7 +295111,7 @@ function pagesFromChapters(session, path42, chapters, pages = [], level = 1, pag
 }
 function projectFromTOC(session, path42, level = 1) {
   const filename = tocFile(path42);
-  if (!import_node_fs12.default.existsSync(filename)) {
+  if (!import_node_fs13.default.existsSync(filename)) {
     throw new Error(`Could not find TOC "${filename}". Please create a '_toc.yml'.`);
   }
   const { dir, base: base5 } = (0, import_node_path19.parse)(filename);
@@ -294988,7 +295163,7 @@ function sortByNumber(a2, b) {
 }
 function projectPagesFromPath(session, path42, level, pageSlugs, opts) {
   const { ignore: ignore3, suppressWarnings } = opts || {};
-  const contents = import_node_fs13.default.readdirSync(path42).filter((file) => !shouldIgnoreFile(session, file)).map((file) => (0, import_node_path20.join)(path42, file)).filter((file) => !ignore3 || !ignore3.includes(file)).sort(sortByNumber);
+  const contents = import_node_fs14.default.readdirSync(path42).filter((file) => !shouldIgnoreFile(session, file)).map((file) => (0, import_node_path20.join)(path42, file)).filter((file) => !ignore3 || !ignore3.includes(file)).sort(sortByNumber);
   if (session.configFiles.filter((file) => contents.includes((0, import_node_path20.join)(path42, file))).length) {
     session.log.debug(`\u{1F50D} Found config file, ignoring subdirectory: ${path42}`);
     return [];
@@ -295054,7 +295229,7 @@ async function projectFromPath(session, path42, indexFile) {
   if (indexFile) {
     if (!isValidFile(indexFile))
       throw Error(`Index file ${indexFile} has invalid extension; must be ${ext_string}}`);
-    if (!import_node_fs13.default.existsSync(indexFile))
+    if (!import_node_fs14.default.existsSync(indexFile))
       throw Error(`Index file ${indexFile} not found`);
   }
   const rootConfigYamls = session.configFiles.map((file) => (0, import_node_path20.join)(path42, file));
@@ -295085,7 +295260,7 @@ async function projectFromPath(session, path42, indexFile) {
 }
 
 // ../myst-cli/dist/project/toTOC.js
-var import_node_fs14 = __toESM(require("fs"), 1);
+var import_node_fs15 = __toESM(require("fs"), 1);
 var import_node_path21 = require("path");
 function getRelativeDocumentLink(file, path42) {
   if (path42 === ".")
@@ -295152,7 +295327,7 @@ function tocFromProject(project, path42 = ".") {
 function writeTOCFromProject(project, path42) {
   const filename = (0, import_node_path21.join)(path42, "_toc.yml");
   const content3 = `${GENERATED_TOC_HEADER}${js_yaml_default.dump(tocFromProject(project, path42))}`;
-  import_node_fs14.default.writeFileSync(filename, content3);
+  import_node_fs15.default.writeFileSync(filename, content3);
 }
 
 // ../myst-cli/dist/project/load.js
@@ -295205,7 +295380,7 @@ Consider running "myst init --project" in that directory`, "warn", { ruleId: Rul
         return true;
       if (isUrl(bib))
         return true;
-      if (import_node_fs15.default.existsSync(bib)) {
+      if (import_node_fs16.default.existsSync(bib)) {
         allBibFiles.push(bib);
         return true;
       }
@@ -295240,7 +295415,7 @@ function filterPages(project) {
 var import_node_fs30 = __toESM(require("fs"), 1);
 
 // ../myst-cli/dist/process/site.js
-var import_node_path39 = require("path");
+var import_node_path38 = require("path");
 
 // ../../node_modules/intersphinx/dist/intersphinx.js
 var import_fs2 = __toESM(require("fs"), 1);
@@ -296697,19 +296872,19 @@ var Domains;
 })(Domains || (Domains = {}));
 
 // ../myst-cli/dist/build/site/manifest.js
-var import_node_fs22 = __toESM(require("fs"), 1);
+var import_node_fs23 = __toESM(require("fs"), 1);
 var import_node_path29 = __toESM(require("path"), 1);
 
 // ../myst-cli/dist/build/site/template.js
-var import_node_fs20 = __toESM(require("fs"), 1);
+var import_node_fs21 = __toESM(require("fs"), 1);
 var import_node_path26 = require("path");
 
 // ../myst-templates/dist/template.js
-var import_node_fs19 = __toESM(require("fs"), 1);
+var import_node_fs20 = __toESM(require("fs"), 1);
 var import_node_path25 = require("path");
 
 // ../myst-templates/dist/download.js
-var import_node_fs17 = __toESM(require("fs"), 1);
+var import_node_fs18 = __toESM(require("fs"), 1);
 var import_node_path23 = require("path");
 var import_node_crypto3 = require("crypto");
 var import_adm_zip = __toESM(require_adm_zip(), 1);
@@ -296775,12 +296950,12 @@ function defaultPath(template, hash, opts) {
 function resolveInputs(session, opts) {
   let templateUrl;
   let templatePath;
-  if (opts.template && import_node_fs17.default.existsSync(opts.template)) {
+  if (opts.template && import_node_fs18.default.existsSync(opts.template)) {
     const { base: base5, dir } = (0, import_node_path23.parse)(opts.template);
     if (base5 === TEMPLATE_YML || Object.values(KIND_TO_EXT).filter(Boolean).includes((0, import_node_path23.extname)(base5))) {
       templatePath = dir;
-    } else if (import_node_fs17.default.lstatSync(opts.template).isDirectory()) {
-      if (import_node_fs17.default.existsSync((0, import_node_path23.join)(opts.template, TEMPLATE_YML))) {
+    } else if (import_node_fs18.default.lstatSync(opts.template).isDirectory()) {
+      if (import_node_fs18.default.existsSync((0, import_node_path23.join)(opts.template, TEMPLATE_YML))) {
         templatePath = opts.template;
       }
     }
@@ -296803,21 +296978,21 @@ function resolveInputs(session, opts) {
 }
 async function unnestTemplate(session, path42) {
   var _a6;
-  const content3 = import_node_fs17.default.readdirSync(path42);
+  const content3 = import_node_fs18.default.readdirSync(path42);
   if (content3.includes(TEMPLATE_YML))
     return;
   let nestedPath;
   content3.forEach((dir) => {
     const templateYmlFile2 = (0, import_node_path23.join)(path42, dir, TEMPLATE_YML);
-    if (!nestedPath && import_node_fs17.default.existsSync(templateYmlFile2)) {
+    if (!nestedPath && import_node_fs18.default.existsSync(templateYmlFile2)) {
       nestedPath = (0, import_node_path23.join)(path42, dir);
     }
   });
   if (!nestedPath)
     return;
   const templateYmlFile = (0, import_node_path23.join)(nestedPath, TEMPLATE_YML);
-  import_node_fs17.default.copyFileSync(templateYmlFile, (0, import_node_path23.join)(path42, TEMPLATE_YML));
-  const templateYml = js_yaml_default.load(import_node_fs17.default.readFileSync(templateYmlFile).toString());
+  import_node_fs18.default.copyFileSync(templateYmlFile, (0, import_node_path23.join)(path42, TEMPLATE_YML));
+  const templateYml = js_yaml_default.load(import_node_fs18.default.readFileSync(templateYmlFile).toString());
   if ((_a6 = templateYml.files) === null || _a6 === void 0 ? void 0 : _a6.length) {
     await Promise.all(templateYml.files.map(async (file) => {
       const resolvedEntry = [...nestedPath.split(import_node_path23.sep), file].join("/");
@@ -296871,8 +297046,8 @@ async function downloadAndUnzipTemplate(session, downloadUrl, opts) {
   }
   const { templatePath } = opts;
   const zipFile = (0, import_node_path23.join)(templatePath, "template.zip");
-  (0, import_node_fs17.mkdirSync)(templatePath, { recursive: true });
-  const fileStream = (0, import_node_fs17.createWriteStream)(zipFile);
+  (0, import_node_fs18.mkdirSync)(templatePath, { recursive: true });
+  const fileStream = (0, import_node_fs18.createWriteStream)(zipFile);
   await new Promise((resolve7, reject) => {
     var _a6, _b;
     (_a6 = res.body) === null || _a6 === void 0 ? void 0 : _a6.pipe(fileStream);
@@ -297015,7 +297190,7 @@ function debugLogger(session) {
 }
 
 // ../myst-templates/dist/validators.js
-var import_node_fs18 = __toESM(require("fs"), 1);
+var import_node_fs19 = __toESM(require("fs"), 1);
 var import_node_path24 = __toESM(require("path"), 1);
 function validateFile(session, input3, opts) {
   const filename = validateString(input3, opts);
@@ -297027,7 +297202,7 @@ function validateFile(session, input3, opts) {
   } else {
     resolvedFile = import_node_path24.default.resolve(filename);
   }
-  if (!import_node_fs18.default.existsSync(resolvedFile)) {
+  if (!import_node_fs19.default.existsSync(resolvedFile)) {
     return validationError(`unable to resolve file: ${filename}`, opts);
   }
   const { copyFolder, relativePathFrom } = opts;
@@ -297570,10 +297745,10 @@ var MystTemplate = class {
   }
   getTemplateYml() {
     const templateYmlPath = this.getTemplateYmlPath();
-    if (!import_node_fs19.default.existsSync(templateYmlPath)) {
+    if (!import_node_fs20.default.existsSync(templateYmlPath)) {
       throw new Error(`The template yml at "${templateYmlPath}" does not exist`);
     }
-    const content3 = import_node_fs19.default.readFileSync(templateYmlPath).toString();
+    const content3 = import_node_fs20.default.readFileSync(templateYmlPath).toString();
     return js_yaml_default.load(content3);
   }
   getValidatedTemplateYml() {
@@ -297654,7 +297829,7 @@ var MystTemplate = class {
     return validatedDoc;
   }
   async ensureTemplateExistsOnPath(force) {
-    if (!force && import_node_fs19.default.existsSync((0, import_node_path25.join)(this.templatePath, TEMPLATE_YML))) {
+    if (!force && import_node_fs20.default.existsSync((0, import_node_path25.join)(this.templatePath, TEMPLATE_YML))) {
       this.session.log.debug(`Template found: ${this.templatePath}`);
     } else if (!this.templateUrl) {
       throw new Error(`No template on path and no download URL to fetch from: ${this.templatePath}`);
@@ -297677,7 +297852,7 @@ To list valid templates, try the command "myst templates list"`);
     }
   }
   prepare(opts) {
-    if (!import_node_fs19.default.existsSync((0, import_node_path25.join)(this.templatePath, TEMPLATE_YML))) {
+    if (!import_node_fs20.default.existsSync((0, import_node_path25.join)(this.templatePath, TEMPLATE_YML))) {
       throw new Error(`The template at "${(0, import_node_path25.join)(this.templatePath, TEMPLATE_YML)}" does not exist`);
     }
     const fileOpts = { copyFolder: opts.filesPath };
@@ -297698,15 +297873,15 @@ To list valid templates, try the command "myst templates list"`);
         return;
       const source2 = (0, import_node_path25.join)(this.templatePath, ...file.split("/"));
       const dest = (0, import_node_path25.join)(outputDir, ...file.split("/"));
-      if (import_node_fs19.default.existsSync(dest)) {
+      if (import_node_fs20.default.existsSync(dest)) {
         if (!(opts === null || opts === void 0 ? void 0 : opts.force)) {
           this.session.log.debug(`Template files ${file} already exists, not copying.`);
           return;
         }
-        import_node_fs19.default.rmSync(dest);
+        import_node_fs20.default.rmSync(dest);
       }
-      import_node_fs19.default.mkdirSync((0, import_node_path25.dirname)(dest), { recursive: true });
-      import_node_fs19.default.copyFileSync(source2, dest);
+      import_node_fs20.default.mkdirSync((0, import_node_path25.dirname)(dest), { recursive: true });
+      import_node_fs20.default.copyFileSync(source2, dest);
     });
   }
 };
@@ -297746,7 +297921,7 @@ async function getMystTemplate(session, opts) {
 }
 async function installSiteTemplate(session, mystTemplate) {
   var _a6, _b;
-  if (import_node_fs20.default.existsSync((0, import_node_path26.join)(mystTemplate.templatePath, "node_modules")))
+  if (import_node_fs21.default.existsSync((0, import_node_path26.join)(mystTemplate.templatePath, "node_modules")))
     return;
   const toc = tic();
   session.log.info("\u2935\uFE0F  Installing web libraries (can take up to 60 s)");
@@ -297757,7 +297932,7 @@ async function installSiteTemplate(session, mystTemplate) {
 }
 
 // ../myst-cli/dist/build/utils/collectExportOptions.js
-var import_node_fs21 = __toESM(require("fs"), 1);
+var import_node_fs22 = __toESM(require("fs"), 1);
 var import_node_path28 = __toESM(require("path"), 1);
 
 // ../myst-cli/dist/build/utils/defaultNames.js
@@ -297817,7 +297992,7 @@ function resolveTemplate(sourceFile, exp, disableTemplate) {
     return null;
   if (exp.template) {
     const resolvedTemplatePath = import_node_path28.default.resolve(import_node_path28.default.dirname(sourceFile), exp.template);
-    if (import_node_fs21.default.existsSync(resolvedTemplatePath)) {
+    if (import_node_fs22.default.existsSync(resolvedTemplatePath)) {
       return resolvedTemplatePath;
     }
   }
@@ -297844,8 +298019,8 @@ function resolveFormat(vfile2, exp) {
     return ExportFormats.typst;
   if ((_c = exp.template) === null || _c === void 0 ? void 0 : _c.endsWith("-docx"))
     return ExportFormats.docx;
-  if (exp.template && import_node_fs21.default.existsSync(exp.template)) {
-    const templateFiles = import_node_fs21.default.readdirSync(exp.template);
+  if (exp.template && import_node_fs22.default.existsSync(exp.template)) {
+    const templateFiles = import_node_fs22.default.readdirSync(exp.template);
     const templateTexFiles = templateFiles.filter((file) => file.endsWith(".tex"));
     const templateTypFiles = templateFiles.filter((file) => file.endsWith(".typ"));
     if (templateTexFiles.length && !templateTypFiles.length)
@@ -297893,7 +298068,7 @@ function resolveArticles(session, sourceFile, vfile2, exp, projectPath) {
     if (!article.file)
       return article;
     const resolvedFile = import_node_path28.default.resolve(import_node_path28.default.dirname(sourceFile), article.file);
-    if (!import_node_fs21.default.existsSync(resolvedFile)) {
+    if (!import_node_fs22.default.existsSync(resolvedFile)) {
       fileError(vfile2, `Invalid export article - '${article.file}' does not exist`, {
         ruleId: RuleId.exportArticleExists
       });
@@ -297903,7 +298078,7 @@ function resolveArticles(session, sourceFile, vfile2, exp, projectPath) {
   }).filter((article) => !!article);
   resolved.sub_articles = (_d2 = resolved.sub_articles) === null || _d2 === void 0 ? void 0 : _d2.map((file) => {
     const resolvedFile = import_node_path28.default.resolve(import_node_path28.default.dirname(sourceFile), file);
-    if (!import_node_fs21.default.existsSync(resolvedFile)) {
+    if (!import_node_fs22.default.existsSync(resolvedFile)) {
       fileError(vfile2, `Invalid export sub_article - '${file}' does not exist`, {
         ruleId: RuleId.exportArticleExists
       });
@@ -298045,7 +298220,7 @@ async function resolvePageExports(session, file) {
   ], {})).filter((exp) => {
     return [".docx", ".pdf", ".zip", ".xml"].includes(import_node_path29.default.extname(exp.output));
   }).filter((exp) => {
-    return import_node_fs22.default.existsSync(exp.output);
+    return import_node_fs23.default.existsSync(exp.output);
   });
   const exportsAsDownloads = exports2.map((exp) => {
     const { format, output: output2 } = exp;
@@ -298210,7 +298385,7 @@ function resolveSiteAction(session, action, file, property) {
     };
   }
   const resolvedFile = import_node_path29.default.resolve(import_node_path29.default.dirname(file), action.url);
-  if (!import_node_fs22.default.existsSync(resolvedFile)) {
+  if (!import_node_fs23.default.existsSync(resolvedFile)) {
     if (action.static) {
       addWarningForFile(session, file, `Could not find static resource at "${action.url}" in ${property}`, "error", { ruleId: RuleId.staticActionFileCopied });
       return void 0;
@@ -298279,16 +298454,109 @@ async function getSiteManifest(session, opts) {
 }
 
 // ../myst-cli/dist/process/loadReferences.js
-var import_node_fs23 = __toESM(require("fs"), 1);
+var import_node_fs24 = __toESM(require("fs"), 1);
+
+// ../myst-cli/dist/transforms/crossReferences.js
+var XREF_MAX_AGE = 1;
+function mystDataFilename(dataUrl) {
+  return `myst-${computeHash(dataUrl)}.json`;
+}
+async function fetchMystData(session, dataUrl, urlSource, vfile2) {
+  var _a6;
+  let note;
+  if (dataUrl) {
+    const filename = mystDataFilename(dataUrl);
+    const cacheData = loadFromCache(session, filename, { maxAge: XREF_MAX_AGE });
+    if (cacheData) {
+      return JSON.parse(cacheData);
+    }
+    try {
+      const resp = await session.fetch(dataUrl);
+      if (resp.ok) {
+        const data = await resp.json();
+        writeToCache(session, filename, JSON.stringify(data));
+        return data;
+      }
+    } catch {
+    }
+    note = "Could not load data from external project";
+  } else {
+    note = "Data source URL unavailable";
+  }
+  fileWarn(vfile2, `Unable to resolve link text from external MyST reference: ${(_a6 = urlSource !== null && urlSource !== void 0 ? urlSource : dataUrl) !== null && _a6 !== void 0 ? _a6 : ""}`, {
+    ruleId: RuleId.mystLinkValid,
+    note
+  });
+  return;
+}
+async function fetchMystLinkData(session, node3, vfile2) {
+  return fetchMystData(session, node3.dataUrl, node3.urlSource, vfile2);
+}
+async function fetchMystXRefData(session, node3, vfile2) {
+  let dataUrl;
+  if (node3.remoteBaseUrl && node3.dataUrl) {
+    dataUrl = `${node3.remoteBaseUrl}${node3.dataUrl}`;
+  }
+  return fetchMystData(session, dataUrl, node3.urlSource, vfile2);
+}
+function nodesFromMystXRefData(data, identifier, vfile2, opts) {
+  const targetNodes = selectMdastNodes(data.mdast, identifier, opts === null || opts === void 0 ? void 0 : opts.maxNodes).nodes;
+  if (!(targetNodes === null || targetNodes === void 0 ? void 0 : targetNodes.length)) {
+    fileWarn(vfile2, `Unable to resolve content from external MyST reference: ${opts === null || opts === void 0 ? void 0 : opts.urlSource}`, {
+      ruleId: RuleId.mystLinkValid,
+      note: `Could not locate identifier ${identifier} in page content`
+    });
+    return;
+  }
+  return targetNodes;
+}
+async function transformMystXRefs(session, vfile2, mdast2, frontmatter) {
+  const toc = tic();
+  const nodes = selectAll("link,crossReference", mdast2).filter((node3) => {
+    return node3.protocol === "xref:myst" && node3.dataUrl;
+  }).filter((node3) => {
+    var _a6;
+    if (!((_a6 = node3.children) === null || _a6 === void 0 ? void 0 : _a6.length))
+      return true;
+    return !!node3.identifier;
+  });
+  if (nodes.length === 0)
+    return;
+  session.log.debug(`Updating link text for ${plural("%s external MyST reference(s)", nodes)}`);
+  let number2 = 0;
+  await Promise.all([
+    ...nodes.map(async (node3) => {
+      var _a6, _b, _c;
+      if (!node3.identifier) {
+        const data = await fetchMystLinkData(session, node3, vfile2);
+        if (!data)
+          return;
+        node3.children = [{ type: "text", value: (_c = (_b = (_a6 = data.frontmatter) === null || _a6 === void 0 ? void 0 : _a6.title) !== null && _b !== void 0 ? _b : data.slug) !== null && _c !== void 0 ? _c : "" }];
+      } else {
+        const data = await fetchMystXRefData(session, node3, vfile2);
+        if (!data)
+          return;
+        const targets = nodesFromMystXRefData(data, node3.identifier, vfile2, {
+          urlSource: node3.urlSource,
+          maxNodes: 1
+        });
+        if (targets === null || targets === void 0 ? void 0 : targets.length) {
+          addChildrenFromTargetNode(node3, targets[0], frontmatter.numbering, vfile2);
+        }
+      }
+      number2 += 1;
+    })
+  ]);
+  const denominator = number2 === nodes.length ? "" : `/${nodes.length}`;
+  session.log.info(toc(`\u{1FA84}  Updated link text for ${plural(`%s${denominator} external MyST reference(s)`, number2)} in %s seconds`));
+}
+
+// ../myst-cli/dist/process/loadReferences.js
 var import_node_path30 = require("path");
-function inventoryCacheFile(session, refKind, id, path42) {
+function inventoryCacheFilename(refKind, id, path42) {
   const hashcontent = `${id}${path42}`;
   const ext2 = refKind === "intersphinx" ? "inv" : "json";
-  const filename = `${refKind}-${computeHash(hashcontent)}.${ext2}`;
-  const cacheFolder = (0, import_node_path30.join)(session.buildPath(), "cache");
-  if (!import_node_fs23.default.existsSync(cacheFolder))
-    import_node_fs23.default.mkdirSync(cacheFolder, { recursive: true });
-  return (0, import_node_path30.join)(cacheFolder, filename);
+  return `xrefs-${refKind}-${computeHash(hashcontent)}.${ext2}`;
 }
 async function preloadReference(session, key2, reference) {
   const ref = {
@@ -298296,26 +298564,31 @@ async function preloadReference(session, key2, reference) {
     url: reference.url,
     kind: reference.kind
   };
-  const mystCachePath = inventoryCacheFile(session, "myst", key2, reference.url);
-  const intersphinxCachePath = inventoryCacheFile(session, "intersphinx", key2, reference.url);
-  if ((!ref.kind || ref.kind === "myst") && import_node_fs23.default.existsSync(mystCachePath)) {
-    const toc = tic();
-    const xrefs = JSON.parse(import_node_fs23.default.readFileSync(mystCachePath).toString());
-    session.log.debug(`Loading cached inventory file for ${reference.url}: ${mystCachePath}`);
-    session.log.info(toc(`\u{1F3EB} Read ${xrefs.references.length} references links for "${key2}" in %s.`));
+  const toc = tic();
+  const mystXRefFilename = inventoryCacheFilename("myst", key2, reference.url);
+  const mystXRefData = loadFromCache(session, mystXRefFilename, {
+    maxAge: XREF_MAX_AGE
+  });
+  const intersphinxFilename = inventoryCacheFilename("intersphinx", key2, reference.url);
+  if ((!ref.kind || ref.kind === "myst") && !!mystXRefData) {
+    session.log.debug(`Loading cached inventory file for ${reference.url}: ${mystXRefFilename}`);
+    const xrefs = JSON.parse(mystXRefData);
+    session.log.info(toc(`\u{1F3EB} Read ${xrefs.references.length} myst references for "${key2}" in %s (cached).`));
     ref.kind = "myst";
     ref.value = xrefs;
-  } else if ((!ref.kind || ref.kind === "intersphinx") && import_node_fs23.default.existsSync(intersphinxCachePath)) {
+  } else if ((!ref.kind || ref.kind === "intersphinx") && checkCache(session, intersphinxFilename, { maxAge: XREF_MAX_AGE })) {
     const inventory = new Inventory({ id: key2, path: reference.url });
-    const localInventory = new Inventory({ id: key2, path: intersphinxCachePath });
-    session.log.debug(`Loading cached inventory file for ${reference.url}: ${intersphinxCachePath}`);
-    const toc = tic();
+    const localInventory = new Inventory({
+      id: key2,
+      path: cachePath(session, intersphinxFilename)
+    });
+    session.log.debug(`Loading cached inventory file for ${reference.url}: ${intersphinxFilename}`);
     await localInventory.load();
     inventory.project = localInventory.project;
     inventory.version = localInventory.version;
     inventory.data = localInventory.data;
     inventory._loaded = true;
-    session.log.info(toc(`\u{1F3EB} Read ${inventory.numEntries} references links for "${key2}" in %s.`));
+    session.log.info(toc(`\u{1F3EB} Read ${inventory.numEntries} intersphinx references for "${key2}" in %s (cached).`));
     ref.kind = "intersphinx";
     ref.value = inventory;
   }
@@ -298333,15 +298606,19 @@ async function loadReference(session, vfile2, reference) {
     const mystXRefsUrl = `${reference.url}/myst.xref.json`;
     session.log.debug(`Attempting to load MyST xref file: ${mystXRefsUrl}`);
     const toc = tic();
-    const mystXRefsResp = await fetch2(mystXRefsUrl);
-    if (mystXRefsResp.status === 200) {
+    let mystXRefsResp;
+    try {
+      mystXRefsResp = await session.fetch(mystXRefsUrl);
+    } catch {
+      session.log.debug(`Request to ${mystXRefsUrl} failed`);
+    }
+    if ((mystXRefsResp === null || mystXRefsResp === void 0 ? void 0 : mystXRefsResp.status) === 200) {
       reference.kind = "myst";
-      const mystXRefs = await mystXRefsResp.json();
+      const mystXRefs = await (mystXRefsResp === null || mystXRefsResp === void 0 ? void 0 : mystXRefsResp.json());
+      session.log.debug(`Saving remote myst xref file to cache: ${reference.url}`);
+      writeToCache(session, inventoryCacheFilename("myst", reference.key, reference.url), JSON.stringify(mystXRefs));
       reference.value = mystXRefs;
-      const cachePath = inventoryCacheFile(session, "myst", reference.key, reference.url);
-      session.log.debug(`Saving remote myst xref file to cache ${reference.url}: ${cachePath}`);
-      writeFileToFolder(cachePath, JSON.stringify(mystXRefs));
-      session.log.info(toc(`\u{1F3EB} Read ${mystXRefs.references.length} references for "${reference.key}" in %s.`));
+      session.log.info(toc(`\u{1F3EB} Read ${mystXRefs.references.length} myst references for "${reference.key}" in %s.`));
       return reference;
     } else if (reference.kind === "myst") {
       fileError(vfile2, `Problem fetching references entry: ${reference.key} (${mystXRefsUrl})`, {
@@ -298371,15 +298648,24 @@ ${error === null || error === void 0 ? void 0 : error.stack}
       } else {
         session.log.debug(`Unable to load reference "${reference.key}" as intersphinx`);
       }
-      return null;
+      return;
     }
-    const cachePath = inventoryCacheFile(session, "intersphinx", inventory.id, inventory.path);
-    if (!import_node_fs23.default.existsSync(cachePath) && isUrl(inventory.path)) {
-      session.log.debug(`Saving remote inventory file to cache ${inventory.path}: ${cachePath}`);
-      inventory.write(cachePath);
+    reference.kind = "intersphinx";
+    reference.value = inventory;
+    if (inventory.id && inventory.path && isUrl(inventory.path)) {
+      const intersphinxPath = cachePath(session, inventoryCacheFilename("intersphinx", inventory.id, inventory.path));
+      if (!import_node_fs24.default.existsSync(intersphinxPath)) {
+        session.log.debug(`Saving remote inventory file to cache: ${inventory.path}`);
+        import_node_fs24.default.mkdirSync((0, import_node_path30.dirname)(intersphinxPath), { recursive: true });
+        inventory.write(intersphinxPath);
+      }
     }
-    session.log.info(toc(`\u{1F3EB} Read ${inventory.numEntries} references for "${inventory.id}" in %s.`));
+    session.log.info(toc(`\u{1F3EB} Read ${inventory.numEntries} intersphinx references for "${inventory.id}" in %s.`));
+    return reference;
   }
+  fileError(vfile2, `Unable to resolve references: ${reference.key} (${reference.url})`, {
+    ruleId: RuleId.intersphinxReferencesResolve
+  });
 }
 async function loadReferences(session, opts) {
   const state = session.store.getState();
@@ -298402,7 +298688,7 @@ async function loadReferences(session, opts) {
 }
 
 // ../myst-cli/dist/process/mdast.js
-var import_node_path38 = __toESM(require("path"), 1);
+var import_node_path37 = __toESM(require("path"), 1);
 
 // ../myst-cli/dist/transforms/citations.js
 function pushCite(references, citeRenderer, label) {
@@ -298656,77 +298942,14 @@ function transformLiftCodeBlocksInJupytext(mdast2) {
   mdast2.children = flattened;
 }
 
-// ../myst-cli/dist/transforms/crossReferences.js
-async function transformMystXRefs(session, vfile2, mdast2, frontmatter) {
-  const toc = tic();
-  const nodes = selectAll("link,crossReference", mdast2).filter((node3) => {
-    return node3.protocol === "xref:myst" && node3.dataUrl;
-  }).filter((node3) => {
-    var _a6;
-    if (!((_a6 = node3.children) === null || _a6 === void 0 ? void 0 : _a6.length))
-      return true;
-    return !!node3.identifier;
-  });
-  if (nodes.length === 0)
-    return;
-  session.log.debug(`Updating link text for ${plural("%s external MyST reference(s)", nodes)}`);
-  let number2 = 0;
-  let data;
-  await Promise.all([
-    ...nodes.map(async (node3) => {
-      var _a6, _b, _c;
-      try {
-        const resp = await fetch(node3.dataUrl);
-        if (resp.ok) {
-          data = await resp.json();
-        }
-      } catch {
-      }
-      if (!data) {
-        fileWarn(vfile2, `Unable to resolve link text from external MyST reference: ${node3.urlSource}`, { ruleId: RuleId.mystLinkValid, note: "Could not load data from external project" });
-        return;
-      }
-      if (!node3.identifier) {
-        node3.children = [{ type: "text", value: (_c = (_b = (_a6 = data.frontmatter) === null || _a6 === void 0 ? void 0 : _a6.title) !== null && _b !== void 0 ? _b : data.slug) !== null && _c !== void 0 ? _c : "" }];
-      } else {
-        const targets = selectAll(`[identifier=${node3.identifier}]`, data.mdast);
-        const target = targets.find((t2) => {
-          return !["crossReference", "cite", "footnoteDefinition", "footnoteReference"].includes(t2.type);
-        });
-        if (!target) {
-          fileWarn(vfile2, `Unable to resolve link text from external MyST reference: ${node3.urlSource}`, {
-            ruleId: RuleId.mystLinkValid,
-            note: `Could not locate identifier ${node3.identifier} in page content`
-          });
-          return;
-        }
-        addChildrenFromTargetNode(node3, target, frontmatter.numbering, vfile2);
-      }
-      number2 += 1;
-    })
-  ]);
-  const denominator = number2 === nodes.length ? "" : `/${nodes.length}`;
-  session.log.info(toc(`\u{1FA84}  Updated link text for ${plural(`%s${denominator} external MyST reference(s)`, number2)} in %s seconds`));
-}
-
 // ../myst-cli/dist/transforms/dois.js
-var import_node_fs24 = __toESM(require("fs"), 1);
-var import_node_path31 = require("path");
 var CSL_JSON_MIMETYPE = "application/vnd.citationstyles.csl+json";
 var BIBTEX_MIMETYPE = "application/x-bibtex";
-function doiCSLJSONCacheFile(session, normalizedDoi) {
-  const filename = `doi-${computeHash(normalizedDoi)}.csl.json`;
-  const cacheFolder = (0, import_node_path31.join)(session.buildPath(), "cache");
-  if (!import_node_fs24.default.existsSync(cacheFolder))
-    import_node_fs24.default.mkdirSync(cacheFolder, { recursive: true });
-  return (0, import_node_path31.join)(cacheFolder, filename);
-}
-function doiResolvesCacheFile(session, normalizedDoi) {
-  const filename = `doi-${computeHash(normalizedDoi)}.txt`;
-  const cacheFolder = (0, import_node_path31.join)(session.buildPath(), "cache");
-  if (!import_node_fs24.default.existsSync(cacheFolder))
-    import_node_fs24.default.mkdirSync(cacheFolder, { recursive: true });
-  return (0, import_node_path31.join)(cacheFolder, filename);
+function doiCSLJSONCacheFilename(normalizedDoi) {
+  return `doi-${computeHash(normalizedDoi)}.csl.json`;
+}
+function doiResolvesCacheFilename(normalizedDoi) {
+  return `doi-${computeHash(normalizedDoi)}.txt`;
 }
 async function resolveDOIAsBibTeX(session, url) {
   session.log.debug("Fetching DOI BibTeX from doi.org");
@@ -298763,9 +298986,9 @@ async function resolveDoiOrg(session, doiString) {
   const url = doi.buildUrl(doiString);
   if (!doi.validate(doiString) || !normalizedDoi || !url)
     return void 0;
-  const cachePath = doiCSLJSONCacheFile(session, normalizedDoi);
-  if (import_node_fs24.default.existsSync(cachePath)) {
-    const cached = import_node_fs24.default.readFileSync(cachePath).toString();
+  const filename = doiCSLJSONCacheFilename(normalizedDoi);
+  const cached = loadFromCache(session, filename);
+  if (cached) {
     session.log.debug(`Loaded cached reference CSL-JSON for doi:${normalizedDoi}`);
     return JSON.parse(cached);
   }
@@ -298795,8 +299018,8 @@ async function resolveDoiOrg(session, doiString) {
   }
   if (!data)
     return void 0;
-  session.log.debug(`Saving DOI CSL-JSON to cache ${cachePath}`);
-  import_node_fs24.default.writeFileSync(cachePath, JSON.stringify(data));
+  session.log.debug(`Saving DOI CSL-JSON to cache ${filename}`);
+  writeToCache(session, filename, JSON.stringify(data));
   return data;
 }
 async function doiOrgResolves(session, doiString) {
@@ -298804,8 +299027,9 @@ async function doiOrgResolves(session, doiString) {
   const url = doi.buildUrl(doiString);
   if (!doi.validate(doiString) || !normalizedDoi || !url)
     return false;
-  const cachePath = doiResolvesCacheFile(session, normalizedDoi);
-  if (import_node_fs24.default.existsSync(cachePath)) {
+  const filename = doiResolvesCacheFilename(normalizedDoi);
+  const cached = loadFromCache(session, filename);
+  if (cached) {
     session.log.debug(`Loaded cached resolution result for doi:${normalizedDoi}`);
     return true;
   }
@@ -298820,8 +299044,8 @@ async function doiOrgResolves(session, doiString) {
     return false;
   }
   session.log.debug(toc(`Resolved doi existence for doi:${normalizedDoi} in %s`));
-  session.log.debug(`Saving resolution result to cache ${cachePath}`);
-  import_node_fs24.default.writeFileSync(cachePath, "ok");
+  session.log.debug(`Saving resolution result to cache ${filename}`);
+  writeToCache(session, filename, "ok");
   return true;
 }
 async function getCitation(session, vfile2, doiString, node3) {
@@ -298929,6 +299153,81 @@ async function transformLinkedDOIs(session, vfile2, mdast2, doiRenderer, path42)
   return renderer;
 }
 
+// ../myst-cli/dist/transforms/ror.js
+var ROR_MAX_AGE = 30;
+function rorCacheFilename(ror) {
+  return `ror-${computeHash(ror)}.json`;
+}
+async function resolveRORAsJSON(session, ror) {
+  const url = `https://api.ror.org/organizations/${ror}`;
+  session.log.debug(`Fetching ROR JSON from ${url}`);
+  const response = await session.fetch(url).catch(() => {
+    session.log.debug(`Request to ${url} failed.`);
+    return void 0;
+  });
+  if (!response || !response.ok) {
+    session.log.debug(`ROR fetch failed for ${url}`);
+    return void 0;
+  }
+  const data = await response.json();
+  return data;
+}
+async function resolveROR(session, vfile2, node3, ror) {
+  if (!ror)
+    return void 0;
+  const filename = rorCacheFilename(ror);
+  const cached = loadFromCache(session, filename, { maxAge: ROR_MAX_AGE });
+  if (cached)
+    return JSON.parse(cached);
+  const toc = tic();
+  let data;
+  try {
+    data = await resolveRORAsJSON(session, ror);
+    if (data) {
+      session.log.debug(toc(`Fetched ROR JSON for ror:${ror} in %s`));
+    } else {
+      fileError(vfile2, `Could not find ROR "${ror}" from https://ror.org/${ror}`, {
+        node: node3,
+        ruleId: RuleId.rorLinkValid,
+        note: `Please check the ROR is correct and has a page at https://ror.org/${ror}`
+      });
+      session.log.debug(`JSON not available from ror.org for ror:${ror}`);
+    }
+  } catch (error) {
+    session.log.debug(`JSON from ror.org was malformed for ror:${ror}`);
+  }
+  if (!data)
+    return void 0;
+  writeToCache(session, filename, JSON.stringify(data));
+  return data;
+}
+async function transformLinkedRORs(session, vfile2, mdast2, path42) {
+  const toc = tic();
+  const linkedRORs = selectAll("link[protocol=ror]", mdast2);
+  if (linkedRORs.length === 0)
+    return;
+  session.log.debug(`Found ${plural("%s ROR(s)", linkedRORs.length)} to auto link.`);
+  let number2 = 0;
+  await Promise.all([
+    ...linkedRORs.map(async (node3) => {
+      var _a6;
+      const ror = (_a6 = node3.data) === null || _a6 === void 0 ? void 0 : _a6.ror;
+      if (!ror)
+        return;
+      number2 += 1;
+      const rorData = await resolveROR(session, vfile2, node3, ror);
+      if (rorData && toText(node3.children) === ror) {
+        node3.children = [{ type: "text", value: rorData.name }];
+      }
+      return true;
+    })
+  ]);
+  if (number2 > 0) {
+    session.log.info(toc(`\u{1FA84}  Linked ${plural("%s ROR(s)", number2)} in %s for ${path42}`));
+  }
+  return;
+}
+
 // ../../node_modules/unist-util-filter/lib/index.js
 var own16 = {}.hasOwnProperty;
 var filter2 = (
@@ -298980,146 +299279,11 @@ var filter2 = (
   }
 );
 
-// ../myst-cli/dist/transforms/embed.js
-function embedTransform(session, mdast2, file, dependencies, state) {
-  const embedNodes = selectAll("embed", mdast2);
-  embedNodes.forEach((node3) => {
-    var _a6, _b, _c, _d2;
-    const normalized = normalizeLabel((_a6 = node3.source) === null || _a6 === void 0 ? void 0 : _a6.label);
-    if (!normalized)
-      return;
-    const target = state.getTarget(normalized.identifier);
-    if (!target)
-      return;
-    let newNode = copyNode(target.node);
-    if (newNode && node3["remove-output"]) {
-      newNode = filter2(newNode, (n) => {
-        var _a7;
-        return n.type !== "output" && ((_a7 = n.data) === null || _a7 === void 0 ? void 0 : _a7.type) !== "output";
-      });
-    }
-    if (newNode && node3["remove-input"]) {
-      newNode = filter2(newNode, (n) => {
-        var _a7;
-        return n.type !== "code" || ((_a7 = n.data) === null || _a7 === void 0 ? void 0 : _a7.type) === "output";
-      });
-    }
-    selectAll("[identifier],[label],[html_id]", newNode).forEach((idNode) => {
-      delete idNode.identifier;
-      delete idNode.label;
-      delete idNode.html_id;
-    });
-    if (!newNode) {
-      node3.children = [];
-    } else if (newNode.type === "block") {
-      node3.children = newNode.children;
-    } else {
-      node3.children = [newNode];
-    }
-    const multiState = state;
-    if (!multiState.states)
-      return;
-    const { url, filePath } = (_b = multiState.resolveStateProvider(normalized.identifier)) !== null && _b !== void 0 ? _b : {};
-    if (!url)
-      return;
-    const source2 = { url, label: (_c = node3.source) === null || _c === void 0 ? void 0 : _c.label };
-    if (filePath) {
-      session.store.dispatch(watch.actions.addLocalDependency({
-        path: file,
-        dependency: filePath
-      }));
-      const { kind, slug, frontmatter, location: location4 } = (_d2 = selectFile(session, filePath)) !== null && _d2 !== void 0 ? _d2 : {};
-      if (kind)
-        source2.kind = kind;
-      if (slug)
-        source2.slug = slug;
-      if (location4)
-        source2.location = location4;
-      if (frontmatter === null || frontmatter === void 0 ? void 0 : frontmatter.title)
-        source2.title = frontmatter.title;
-      if (frontmatter === null || frontmatter === void 0 ? void 0 : frontmatter.short_title)
-        source2.short_title = frontmatter.short_title;
-    }
-    node3.source = source2;
-    if (!dependencies.map((dep) => dep.url).includes(url))
-      dependencies.push(source2);
-  });
-  const containerNodes = selectAll("container", mdast2);
-  containerNodes.forEach((node3) => {
-    var _a6, _b;
-    const containerEmbeds = (_a6 = node3.children) === null || _a6 === void 0 ? void 0 : _a6.filter((child) => child.type === "embed");
-    if ((containerEmbeds === null || containerEmbeds === void 0 ? void 0 : containerEmbeds.length) === 1) {
-      node3.source = { ...containerEmbeds[0].source };
-      containerEmbeds[0].type = "_lift";
-      if (((_b = containerEmbeds[0].children) === null || _b === void 0 ? void 0 : _b.length) === 1 && containerEmbeds[0].children[0].type === "container") {
-        containerEmbeds[0].children[0].type = "_lift";
-        remove(containerEmbeds[0].children[0], "caption");
-        remove(containerEmbeds[0].children[0], "legend");
-      }
-    }
-  });
-  const remainingEmbedNodes = selectAll("embed", mdast2);
-  remainingEmbedNodes.forEach((node3) => {
-    var _a6;
-    if (((_a6 = node3.children) === null || _a6 === void 0 ? void 0 : _a6.length) === 1 && node3.children[0].type === "container") {
-      node3.children[0].source = { ...node3.source };
-      node3.type = "_lift";
-    }
-  });
-  liftChildren(mdast2, "_lift");
-}
-
-// ../myst-cli/dist/transforms/include.js
-var import_node_path32 = __toESM(require("path"), 1);
-var import_node_fs25 = __toESM(require("fs"), 1);
-var makeFileResolver = (baseFile) => (relativeFile, sourceFile, vfile2) => {
-  const base5 = sourceFile.toLowerCase().endsWith(".tex") ? baseFile : sourceFile;
-  const fullFile = import_node_path32.default.resolve(import_node_path32.default.dirname(base5), relativeFile);
-  if (!import_node_fs25.default.existsSync(fullFile)) {
-    fileError(vfile2, `Include Directive: Could not find "${relativeFile}" relative to "${base5}"`, {
-      ruleId: RuleId.includeContentLoads
-    });
-    return;
-  }
-  return fullFile;
-};
-var makeFileLoader = (session, baseFile) => (fullFile) => {
-  session.store.dispatch(watch.actions.addLocalDependency({
-    path: baseFile,
-    dependency: fullFile
-  }));
-  return import_node_fs25.default.readFileSync(fullFile).toString();
-};
-var makeContentParser = (session, file) => async (filename, content3) => {
-  if (filename.toLowerCase().endsWith(".html")) {
-    const mdast2 = { type: "root", children: [{ type: "html", value: content3 }] };
-    return { mdast: mdast2, kind: SourceFileKind.Article };
-  }
-  const opts = { keepTitleNode: true };
-  if (filename.toLowerCase().endsWith(".tex")) {
-    return loadTexFile(session, content3, file, opts);
-  }
-  if (filename.toLowerCase().endsWith(".ipynb")) {
-    return loadNotebookFile(session, content3, file, opts);
-  }
-  return loadMdFile(session, content3, file, opts);
-};
-async function includeFilesTransform(session, baseFile, tree, frontmatter, vfile2) {
-  const parseContent = makeContentParser(session, baseFile);
-  const loadFile2 = makeFileLoader(session, baseFile);
-  const resolveFile = makeFileResolver(baseFile);
-  await includeDirectiveTransform(tree, frontmatter, vfile2, {
-    resolveFile,
-    loadFile: loadFile2,
-    parseContent,
-    sourceFile: baseFile
-  });
-}
-
 // ../myst-cli/dist/transforms/links.js
-var import_node_fs26 = __toESM(require("fs"), 1);
-var import_node_path33 = __toESM(require("path"), 1);
+var import_node_fs25 = __toESM(require("fs"), 1);
+var import_node_path31 = __toESM(require("path"), 1);
 var import_p_limit = __toESM(require_p_limit(), 1);
+var LINK_MAX_AGE = 30;
 var skippedDomains = [
   "www.linkedin.com",
   "linkedin.com",
@@ -299127,20 +299291,8 @@ var skippedDomains = [
   "twitter.com",
   "en.wikipedia.org"
 ];
-function checkLinkCacheFile(session, url) {
-  const filename = `checkLink-${computeHash(url)}.json`;
-  return import_node_path33.default.join(session.buildPath(), "cache", filename);
-}
-function writeLinkCache(session, link4) {
-  session.log.debug(`Writing successful link check to cache file for "${link4.url}"`);
-  writeFileToFolder(checkLinkCacheFile(session, link4.url), JSON.stringify(link4, null, 2));
-}
-function loadLinkCache(session, url) {
-  const cacheFile = checkLinkCacheFile(session, url);
-  if (!import_node_fs26.default.existsSync(cacheFile))
-    return;
-  session.log.debug(`Using cached success for "${url}"`);
-  return JSON.parse(import_node_fs26.default.readFileSync(cacheFile).toString());
+function checkLinkCacheFilename(url) {
+  return `checkLink-${computeHash(url)}.json`;
 }
 async function checkLink(session, url) {
   const cached = selectors_exports.selectLinkStatus(session.store.getState(), url);
@@ -299164,13 +299316,14 @@ async function checkLink(session, url) {
       return link4;
     }
     session.log.debug(`Checking that "${url}" exists`);
-    const linkCache = loadLinkCache(session, url);
-    const resp = linkCache !== null && linkCache !== void 0 ? linkCache : await session.fetch(url, { headers: EXT_REQUEST_HEADERS });
+    const filename = checkLinkCacheFilename(url);
+    const linkCache = loadFromCache(session, filename, { maxAge: LINK_MAX_AGE });
+    const resp = linkCache ? JSON.parse(linkCache) : await session.fetch(url, { headers: EXT_REQUEST_HEADERS });
     link4.ok = resp.ok;
     link4.status = resp.status;
     link4.statusText = resp.statusText;
     if (link4.ok && !linkCache) {
-      writeLinkCache(session, link4);
+      writeToCache(session, filename, JSON.stringify(link4));
     }
   } catch (error) {
     session.log.debug(`
@@ -299184,22 +299337,20 @@ ${error === null || error === void 0 ? void 0 : error.stack}
   session.store.dispatch(links.actions.updateLink(link4));
   return link4;
 }
-function fileFromRelativePath(pathFromLink, file, sitePath) {
+function fileFromRelativePath(pathFromLink, file) {
   let target;
   [pathFromLink, ...target] = pathFromLink.split("#");
   pathFromLink = decodeURIComponent(pathFromLink);
-  if (!sitePath)
-    sitePath = ".";
   if (file) {
-    pathFromLink = import_node_path33.default.relative(sitePath, import_node_path33.default.resolve(import_node_path33.default.dirname(file), pathFromLink));
+    pathFromLink = import_node_path31.default.resolve(import_node_path31.default.dirname(file), pathFromLink);
   }
-  if (import_node_fs26.default.existsSync(pathFromLink) && import_node_fs26.default.lstatSync(pathFromLink).isDirectory()) {
+  if (import_node_fs25.default.existsSync(pathFromLink) && import_node_fs25.default.lstatSync(pathFromLink).isDirectory()) {
     return void 0;
   }
-  if (!import_node_fs26.default.existsSync(pathFromLink)) {
-    if (import_node_fs26.default.existsSync(`${pathFromLink}.md`)) {
+  if (!import_node_fs25.default.existsSync(pathFromLink)) {
+    if (import_node_fs25.default.existsSync(`${pathFromLink}.md`)) {
       pathFromLink = `${pathFromLink}.md`;
-    } else if (import_node_fs26.default.existsSync(`${pathFromLink}.ipynb`)) {
+    } else if (import_node_fs25.default.existsSync(`${pathFromLink}.ipynb`)) {
       pathFromLink = `${pathFromLink}.ipynb`;
     } else {
       return void 0;
@@ -299225,13 +299376,25 @@ var StaticFileTransformer = class {
     if (!linkFileWithTarget) {
       return false;
     }
-    const [linkFile, ...target] = linkFileWithTarget.split("#");
+    const [linkFile] = linkFileWithTarget.split("#");
+    const target = linkFileWithTarget.slice(linkFile.length + 1);
+    const reference = normalizeLabel(target);
     const { url, title, dataUrl } = selectors_exports.selectFileInfo(this.session.store.getState(), linkFile) || {};
     if (url != null && link4.static !== true) {
-      link4.url = [url, ...target || []].join("#");
-      link4.internal = true;
       if (dataUrl)
         link4.dataUrl = dataUrl;
+      if (reference) {
+        const xref = link4;
+        xref.type = "crossReference";
+        xref.identifier = reference.identifier;
+        xref.label = reference.label;
+        xref.url = url;
+        xref.remote = true;
+        return true;
+      } else {
+        link4.url = [url, ...target || []].join("#");
+        link4.internal = true;
+      }
     } else {
       const copiedFile = hashAndCopyStaticFile(this.session, linkFile, this.session.publicPath(), (m2) => {
         fileError(file, m2, {
@@ -299245,7 +299408,7 @@ var StaticFileTransformer = class {
       link4.url = `/${copiedFile}`;
       link4.static = true;
     }
-    updateLinkTextIfEmpty(link4, title || import_node_path33.default.basename(linkFile));
+    updateLinkTextIfEmpty(link4, title || import_node_path31.default.basename(linkFile));
     return true;
   }
 };
@@ -299273,19 +299436,270 @@ async function checkLinksTransform(session, file, mdast2) {
   return linkResults;
 }
 
+// ../myst-cli/dist/transforms/embed.js
+function mutateEmbedNode(node3, targetNode) {
+  if (targetNode && node3["remove-output"]) {
+    targetNode = filter2(targetNode, (n) => {
+      var _a6;
+      return n.type !== "output" && ((_a6 = n.data) === null || _a6 === void 0 ? void 0 : _a6.type) !== "output";
+    });
+  }
+  if (targetNode && node3["remove-input"]) {
+    targetNode = filter2(targetNode, (n) => {
+      var _a6;
+      return n.type !== "code" || ((_a6 = n.data) === null || _a6 === void 0 ? void 0 : _a6.type) === "output";
+    });
+  }
+  selectAll("[identifier],[label],[html_id]", targetNode).forEach((idNode) => {
+    if (!isTargetIdentifierNode(idNode))
+      return;
+    delete idNode.identifier;
+    delete idNode.label;
+    delete idNode.html_id;
+  });
+  if (!targetNode) {
+    node3.children = [];
+  } else if (targetNode.type === "block") {
+    node3.children = targetNode.children;
+  } else {
+    node3.children = [targetNode];
+  }
+}
+async function embedTransform(session, mdast2, file, dependencies, state) {
+  const mystTransformer = new MystTransformer(Object.values(castSession(session).$externalReferences));
+  const embedNodes = selectAll("embed", mdast2);
+  await Promise.all(embedNodes.map(async (node3) => {
+    var _a6, _b, _c, _d2, _e, _f, _g, _h;
+    const vfile2 = state.vfile;
+    const label = (_a6 = node3.source) === null || _a6 === void 0 ? void 0 : _a6.label;
+    if (!label) {
+      fileError(vfile2, "Embed node does not have a label", { node: node3 });
+      return;
+    }
+    if (label.startsWith("xref:") || label.startsWith("myst:")) {
+      if (!mystTransformer.test(label)) {
+        fileError(vfile2, `Cannot embed "${label}"`, {
+          node: node3,
+          note: "The target must be a MyST project and be included in your project references.\nEmbed does not work with intersphinx."
+        });
+        return;
+      }
+      const referenceLink = {
+        type: "link",
+        url: label,
+        urlSource: label,
+        children: []
+      };
+      const transformed = mystTransformer.transform(referenceLink, vfile2);
+      const referenceXRef = referenceLink;
+      if (transformed) {
+        let data;
+        let targetNodes2;
+        if (referenceXRef.identifier) {
+          data = await fetchMystXRefData(session, referenceXRef, vfile2);
+          if (!data)
+            return;
+          targetNodes2 = nodesFromMystXRefData(data, referenceXRef.identifier, vfile2, {
+            urlSource: label
+            // TODO: maxNodes - settable via embed directive
+          });
+        } else {
+          data = await fetchMystLinkData(session, referenceLink, vfile2);
+          if (!data)
+            return;
+          targetNodes2 = data.mdast.children;
+        }
+        const targetNode = { type: "block", children: targetNodes2 };
+        selectAll("crossReference", targetNode).forEach((targetXRef) => {
+          if (targetXRef.remoteBaseUrl)
+            return;
+          targetXRef.remoteBaseUrl = referenceXRef.remoteBaseUrl;
+          if (!targetXRef.remote) {
+            targetXRef.url = referenceXRef.url;
+            targetXRef.dataUrl = referenceXRef.dataUrl;
+            targetXRef.remote = true;
+          }
+        });
+        selectAll("link", targetNode).forEach((targetLink) => {
+          if (!targetLink.internal)
+            return;
+          targetLink.internal = false;
+          targetLink.url = `${referenceXRef.remoteBaseUrl}${targetLink.url}`;
+          if (targetLink.dataUrl) {
+            targetLink.dataUrl = `${referenceXRef.remoteBaseUrl}${targetLink.dataUrl}`;
+          }
+        });
+        selectAll("[source]", targetNode).forEach((target2) => {
+          if (!target2.source)
+            return;
+          target2.source.remoteBaseUrl = referenceXRef.remoteBaseUrl;
+        });
+        mutateEmbedNode(node3, targetNode);
+        const source3 = {
+          url: referenceXRef.url,
+          remoteBaseUrl: referenceXRef.remoteBaseUrl,
+          label
+        };
+        if (data.kind)
+          source3.kind = data.kind;
+        if (data.slug)
+          source3.slug = data.slug;
+        if (data.location)
+          source3.location = data.location;
+        if ((_b = data.frontmatter) === null || _b === void 0 ? void 0 : _b.title)
+          source3.title = data.frontmatter.title;
+        if ((_c = data.frontmatter) === null || _c === void 0 ? void 0 : _c.short_title)
+          source3.short_title = data.frontmatter.short_title;
+        node3.source = source3;
+      }
+      return;
+    }
+    let hash = label;
+    let linkFile;
+    if (label.includes("#")) {
+      const linkFileWithTarget = fileFromRelativePath(label, file);
+      if (!linkFileWithTarget)
+        return;
+      linkFile = linkFileWithTarget.split("#")[0];
+      hash = linkFileWithTarget.slice(linkFile.length + 1);
+    }
+    const { identifier } = (_d2 = normalizeLabel(hash)) !== null && _d2 !== void 0 ? _d2 : {};
+    if (!identifier) {
+      fileError(vfile2, "Embed node does not have label", { node: node3 });
+      return;
+    }
+    const stateProvider = state.resolveStateProvider(identifier, linkFile);
+    if (!stateProvider)
+      return;
+    const cache = castSession(session);
+    const pageMdast = (_f = (_e = cache.$getMdast(stateProvider.filePath)) === null || _e === void 0 ? void 0 : _e.post) === null || _f === void 0 ? void 0 : _f.mdast;
+    if (!pageMdast)
+      return;
+    let targetNodes;
+    if (stateProvider.getFileTarget(identifier)) {
+      targetNodes = pageMdast.children;
+    } else {
+      targetNodes = selectMdastNodes(pageMdast, identifier).nodes;
+    }
+    if (!(targetNodes === null || targetNodes === void 0 ? void 0 : targetNodes.length)) {
+      fileError(vfile2, `Embed target for "${label}" not found`, { node: node3 });
+      return;
+    }
+    const target = { type: "block", children: copyNode(targetNodes) };
+    mutateEmbedNode(node3, target);
+    const multiState = state;
+    if (!multiState.states)
+      return;
+    const { url, filePath } = (_g = multiState.resolveStateProvider(identifier, linkFile)) !== null && _g !== void 0 ? _g : {};
+    if (!url)
+      return;
+    const source2 = { url, label };
+    if (filePath) {
+      session.store.dispatch(watch.actions.addLocalDependency({
+        path: file,
+        dependency: filePath
+      }));
+      const { kind, slug, frontmatter, location: location4 } = (_h = selectFile(session, filePath)) !== null && _h !== void 0 ? _h : {};
+      if (kind)
+        source2.kind = kind;
+      if (slug)
+        source2.slug = slug;
+      if (location4)
+        source2.location = location4;
+      if (frontmatter === null || frontmatter === void 0 ? void 0 : frontmatter.title)
+        source2.title = frontmatter.title;
+      if (frontmatter === null || frontmatter === void 0 ? void 0 : frontmatter.short_title)
+        source2.short_title = frontmatter.short_title;
+    }
+    node3.source = source2;
+    if (!dependencies.map((dep) => dep.url).includes(url))
+      dependencies.push(source2);
+  }));
+  const containerNodes = selectAll("container", mdast2);
+  containerNodes.forEach((node3) => {
+    var _a6, _b;
+    const containerEmbeds = (_a6 = node3.children) === null || _a6 === void 0 ? void 0 : _a6.filter((child) => child.type === "embed");
+    if ((containerEmbeds === null || containerEmbeds === void 0 ? void 0 : containerEmbeds.length) === 1) {
+      node3.source = { ...containerEmbeds[0].source };
+      containerEmbeds[0].type = "_lift";
+      if (((_b = containerEmbeds[0].children) === null || _b === void 0 ? void 0 : _b.length) === 1 && containerEmbeds[0].children[0].type === "container") {
+        containerEmbeds[0].children[0].type = "_lift";
+        remove(containerEmbeds[0].children[0], "caption");
+        remove(containerEmbeds[0].children[0], "legend");
+      }
+    }
+  });
+  const remainingEmbedNodes = selectAll("embed", mdast2);
+  remainingEmbedNodes.forEach((node3) => {
+    var _a6;
+    if (((_a6 = node3.children) === null || _a6 === void 0 ? void 0 : _a6.length) === 1 && node3.children[0].type === "container") {
+      node3.children[0].source = { ...node3.source };
+      node3.type = "_lift";
+    }
+  });
+  liftChildren(mdast2, "_lift");
+}
+
+// ../myst-cli/dist/transforms/include.js
+var import_node_path32 = __toESM(require("path"), 1);
+var import_node_fs26 = __toESM(require("fs"), 1);
+var makeFileResolver = (baseFile) => (relativeFile, sourceFile, vfile2) => {
+  const base5 = sourceFile.toLowerCase().endsWith(".tex") ? baseFile : sourceFile;
+  const fullFile = import_node_path32.default.resolve(import_node_path32.default.dirname(base5), relativeFile);
+  if (!import_node_fs26.default.existsSync(fullFile)) {
+    fileError(vfile2, `Include Directive: Could not find "${relativeFile}" relative to "${base5}"`, {
+      ruleId: RuleId.includeContentLoads
+    });
+    return;
+  }
+  return fullFile;
+};
+var makeFileLoader = (session, baseFile) => (fullFile) => {
+  session.store.dispatch(watch.actions.addLocalDependency({
+    path: baseFile,
+    dependency: fullFile
+  }));
+  return import_node_fs26.default.readFileSync(fullFile).toString();
+};
+var makeContentParser = (session, file) => async (filename, content3) => {
+  if (filename.toLowerCase().endsWith(".html")) {
+    const mdast2 = { type: "root", children: [{ type: "html", value: content3 }] };
+    return { mdast: mdast2, kind: SourceFileKind.Article };
+  }
+  const opts = { keepTitleNode: true };
+  if (filename.toLowerCase().endsWith(".tex")) {
+    return loadTexFile(session, content3, file, opts);
+  }
+  if (filename.toLowerCase().endsWith(".ipynb")) {
+    return loadNotebookFile(session, content3, file, opts);
+  }
+  return loadMdFile(session, content3, file, opts);
+};
+async function includeFilesTransform(session, baseFile, tree, frontmatter, vfile2) {
+  const parseContent = makeContentParser(session, baseFile);
+  const loadFile2 = makeFileLoader(session, baseFile);
+  const resolveFile = makeFileResolver(baseFile);
+  await includeDirectiveTransform(tree, frontmatter, vfile2, {
+    resolveFile,
+    loadFile: loadFile2,
+    parseContent,
+    sourceFile: baseFile
+  });
+}
+
 // ../myst-cli/dist/transforms/mdast.js
 var import_node_fs27 = __toESM(require("fs"), 1);
-var import_node_path34 = require("path");
+var import_node_path33 = require("path");
 function importMdastFromJson(session, filename, mdast2) {
   const mdastNodes = selectAll("mdast", mdast2);
   const loadedData = {};
-  const dir = (0, import_node_path34.dirname)(filename);
+  const dir = (0, import_node_path33.dirname)(filename);
   mdastNodes.forEach((node3) => {
     const [mdastFilename, id] = node3.id.split("#");
     let data = loadedData[mdastFilename];
     if (!data) {
       try {
-        data = JSON.parse(import_node_fs27.default.readFileSync((0, import_node_path34.join)(dir, mdastFilename)).toString());
+        data = JSON.parse(import_node_fs27.default.readFileSync((0, import_node_path33.join)(dir, mdastFilename)).toString());
         loadedData[mdastFilename] = data;
       } catch {
         addWarningForFile(session, filename, `Mdast Node import: Could not load ${mdastFilename}`, "error", { ruleId: RuleId.mdastSnippetImports });
@@ -299305,7 +299719,7 @@ function importMdastFromJson(session, filename, mdast2) {
 
 // ../myst-cli/dist/transforms/outputs.js
 var import_node_fs28 = __toESM(require("fs"), 1);
-var import_node_path35 = require("path");
+var import_node_path34 = require("path");
 
 // ../../node_modules/ansi-regex/index.js
 function ansiRegex({ onlyFirst = false } = {}) {
@@ -299331,7 +299745,7 @@ function getFilename(hash, contentType) {
   return `${hash}${(0, import_nbtx3.extFromMimeType)(contentType)}`;
 }
 function getWriteDestination(hash, contentType, writeFolder) {
-  return (0, import_node_path35.join)(writeFolder, getFilename(hash, contentType));
+  return (0, import_node_path34.join)(writeFolder, getFilename(hash, contentType));
 }
 async function transformOutputsToCache(session, mdast2, kind, opts) {
   const outputs = selectAll("output", mdast2);
@@ -299511,7 +299925,7 @@ function reduceOutputs(session, mdast2, file, writeFolder, opts) {
         });
         if (!path42)
           return void 0;
-        const relativePath = (0, import_node_path35.relative)((0, import_node_path35.dirname)(file), path42);
+        const relativePath = (0, import_node_path34.relative)((0, import_node_path34.dirname)(file), path42);
         return {
           type: "image",
           data: { type: "output" },
@@ -299555,7 +299969,7 @@ function frontmatterPartsTransform(session, file, mdast2, frontmatter) {
 }
 
 // ../myst-execute/dist/execute.js
-var import_node_path36 = __toESM(require("path"), 1);
+var import_node_path35 = __toESM(require("path"), 1);
 var import_node_assert = __toESM(require("assert"), 1);
 var import_node_crypto4 = require("crypto");
 function IOPubAsOutput(msg) {
@@ -299709,9 +300123,9 @@ async function kernelExecutionTransform(tree, vfile2, opts) {
     } else {
       let sessionConnection;
       const sessionOpts = {
-        path: import_node_path36.default.relative(opts.basePath, vfile2.path),
+        path: import_node_path35.default.relative(opts.basePath, vfile2.path),
         type: "notebook",
-        name: import_node_path36.default.basename(vfile2.path),
+        name: import_node_path35.default.basename(vfile2.path),
         kernel: {
           name: (_d2 = (_c = (_b = opts.frontmatter) === null || _b === void 0 ? void 0 : _b.kernelspec) === null || _c === void 0 ? void 0 : _c.name) !== null && _d2 !== void 0 ? _d2 : "python3"
         }
@@ -300314,16 +300728,16 @@ async function launchJupyterServer(contentPath, log) {
 
 // ../myst-execute/dist/cache.js
 var import_node_fs29 = require("fs");
-var import_node_path37 = __toESM(require("path"), 1);
+var import_node_path36 = __toESM(require("path"), 1);
 var LocalDiskCache = class {
-  constructor(cachePath) {
-    this._cachePath = cachePath;
-    if (!(0, import_node_fs29.existsSync)(cachePath)) {
-      (0, import_node_fs29.mkdirSync)(cachePath, { recursive: true });
+  constructor(cachePath2) {
+    this._cachePath = cachePath2;
+    if (!(0, import_node_fs29.existsSync)(cachePath2)) {
+      (0, import_node_fs29.mkdirSync)(cachePath2, { recursive: true });
     }
   }
   _makeKeyPath(key2) {
-    return import_node_path37.default.join(this._cachePath, `${key2}.json`);
+    return import_node_path36.default.join(this._cachePath, `${key2}.json`);
   }
   test(key2) {
     return (0, import_node_fs29.existsSync)(this._makeKeyPath(key2));
@@ -300386,7 +300800,7 @@ async function transformMdast(session, opts) {
   log.debug(`Processing "${file}"`);
   const vfile2 = new VFile();
   vfile2.path = file;
-  const mdast2 = JSON.parse(JSON.stringify(mdastPre));
+  const mdast2 = structuredClone(mdastPre);
   const frontmatter = processPageFrontmatter(session, preFrontmatter !== null && preFrontmatter !== void 0 ? preFrontmatter : {}, {
     property: "frontmatter",
     file,
@@ -300419,31 +300833,20 @@ async function transformMdast(session, opts) {
   });
   await pipe.run(mdast2, vfile2);
   propagateBlockDataToCode(session, vfile2, mdast2);
-  const transformers = [
-    new WikiTransformer(),
-    new GithubTransformer(),
-    new RRIDTransformer(),
-    new DOITransformer(),
-    // This also is picked up in the next transform
-    new MystTransformer(Object.values(cache.$externalReferences)),
-    new SphinxTransformer(Object.values(cache.$externalReferences))
-  ];
-  linksTransform(mdast2, vfile2, { transformers, selector: LINKS_SELECTOR });
-  await transformMystXRefs(session, vfile2, mdast2, frontmatter);
   cache.$citationRenderers[file] = await transformLinkedDOIs(session, vfile2, mdast2, cache.$doiRenderers, file);
   const rendererFiles = [file];
   if (projectPath) {
     rendererFiles.unshift(projectPath);
   } else {
-    const localFiles = await bibFilesInDir(session, import_node_path38.default.dirname(file)) || [];
+    const localFiles = await bibFilesInDir(session, import_node_path37.default.dirname(file)) || [];
     rendererFiles.push(...localFiles);
   }
   const fileCitationRenderer = combineCitationRenderers(cache, ...rendererFiles);
   if (execute) {
-    const cachePath = import_node_path38.default.join(session.buildPath(), "execute");
+    const cachePath2 = import_node_path37.default.join(session.buildPath(), "execute");
     await kernelExecutionTransform(mdast2, vfile2, {
       basePath: session.sourcePath(),
-      cache: new LocalDiskCache(cachePath),
+      cache: new LocalDiskCache(cachePath2),
       sessionFactory: () => session.jupyterSessionManager(),
       frontmatter,
       ignoreCache: false,
@@ -300499,20 +300902,31 @@ async function postProcessMdast(session, { file, checkLinks, pageReferenceStates
     return;
   const vfile2 = new VFile();
   vfile2.path = file;
-  const { mdast: mdast2, dependencies } = mdastPost;
+  const { mdast: mdast2, dependencies, frontmatter } = mdastPost;
   const fileState = cache.$internalReferences[file];
   const state = pageReferenceStates ? new MultiPageReferenceResolver(pageReferenceStates, file, vfile2) : fileState;
   const transformers = [
     ...extraLinkTransformers || [],
+    new WikiTransformer(),
+    new GithubTransformer(),
+    new RRIDTransformer(),
+    new RORTransformer(),
+    new DOITransformer(),
+    // This also is picked up in the next transform
+    new MystTransformer(Object.values(cache.$externalReferences)),
+    new SphinxTransformer(Object.values(cache.$externalReferences)),
     new StaticFileTransformer(session, file)
     // Links static files and internally linked files
   ];
+  resolveLinksAndCitationsTransform(mdast2, { state, transformers });
   linksTransform(mdast2, state.vfile, {
     transformers,
     selector: LINKS_SELECTOR
   });
-  resolveReferencesTransform(mdast2, state.vfile, { state });
-  embedTransform(session, mdast2, file, dependencies, state);
+  await transformLinkedRORs(session, vfile2, mdast2, file);
+  resolveReferencesTransform(mdast2, state.vfile, { state, transformers });
+  await transformMystXRefs(session, vfile2, mdast2, frontmatter);
+  await embedTransform(session, mdast2, file, dependencies, state);
   const pipe = unified();
   (_a6 = session.plugins) === null || _a6 === void 0 ? void 0 : _a6.transforms.forEach((t2) => {
     if (t2.stage !== "project")
@@ -300582,13 +300996,13 @@ async function finalizeMdast(session, mdast2, frontmatter, file, { imageWriteFol
 
 // ../myst-cli/dist/process/site.js
 var WEB_IMAGE_EXTENSIONS = [
+  ImageExtensions.mp4,
   ImageExtensions.webp,
   ImageExtensions.svg,
   ImageExtensions.gif,
   ImageExtensions.png,
   ImageExtensions.jpg,
-  ImageExtensions.jpeg,
-  ImageExtensions.mp4
+  ImageExtensions.jpeg
 ];
 function changeFile(session, path42, eventType) {
   session.log.debug(`File modified: "${path42}" (${eventType})`);
@@ -300598,7 +301012,7 @@ function changeFile(session, path42, eventType) {
   delete cache.$citationRenderers[path42];
 }
 async function writeSiteManifest(session, opts) {
-  const configPath = (0, import_node_path39.join)(session.sitePath(), "config.json");
+  const configPath = (0, import_node_path38.join)(session.sitePath(), "config.json");
   session.log.debug("Writing site config.json");
   const siteManifest = await getSiteManifest(session, opts);
   writeFileToFolder(configPath, JSON.stringify(siteManifest));
@@ -300639,7 +301053,7 @@ async function writeMystXRefJson(session, states) {
       return [pageRef, ...pageIdRefs, ...targetRefs];
     }).flat()
   };
-  const filename = (0, import_node_path39.join)(session.sitePath(), "myst.xref.json");
+  const filename = (0, import_node_path38.join)(session.sitePath(), "myst.xref.json");
   session.log.debug(`Writing myst.xref.json file: ${filename}`);
   writeFileToFolder(filename, JSON.stringify(mystXRefs));
 }
@@ -300670,7 +301084,7 @@ async function writeObjectsInv(session, states, siteConfig) {
       });
     });
   });
-  const filename = (0, import_node_path39.join)(session.sitePath(), "objects.inv");
+  const filename = (0, import_node_path38.join)(session.sitePath(), "objects.inv");
   session.log.debug(`Writing objects.inv file: ${filename}`);
   inv.write(filename);
 }
@@ -300729,7 +301143,7 @@ async function resolvePageSource(session, file) {
       ruleId: RuleId.sourceFileCopied
     });
   });
-  return { format: (0, import_node_path39.extname)(file).substring(1), filename: (0, import_node_path39.basename)(file), url: `/${fileHash}` };
+  return { format: (0, import_node_path38.extname)(file).substring(1), filename: (0, import_node_path38.basename)(file), url: `/${fileHash}` };
 }
 async function writeFile(session, { file, pageSlug, projectSlug, projectPath }) {
   const toc = tic();
@@ -300747,7 +301161,7 @@ async function writeFile(session, { file, pageSlug, projectSlug, projectPath })
   if (projectSlug)
     jsonFilenameParts.push(projectSlug);
   jsonFilenameParts.push(`${pageSlug}.json`);
-  writeFileToFolder((0, import_node_path39.join)(...jsonFilenameParts), JSON.stringify({
+  writeFileToFolder((0, import_node_path38.join)(...jsonFilenameParts), JSON.stringify({
     kind,
     sha256,
     slug,
@@ -300948,7 +301362,7 @@ async function buildSite(session, opts) {
 }
 
 // ../myst-cli/dist/build/utils/localArticleExport.js
-var import_node_path53 = __toESM(require("path"), 1);
+var import_node_path52 = __toESM(require("path"), 1);
 var import_chokidar = __toESM(require_chokidar(), 1);
 
 // ../myst-cli/dist/build/utils/resolveAndLogErrors.js
@@ -300970,10 +301384,10 @@ ${e2 === null || e2 === void 0 ? void 0 : e2.stack}
 
 // ../myst-cli/dist/build/tex/single.js
 var import_adm_zip2 = __toESM(require_adm_zip(), 1);
-var import_node_path45 = __toESM(require("path"), 1);
+var import_node_path44 = __toESM(require("path"), 1);
 
 // ../jtex/dist/tex/export.js
-var import_node_path40 = __toESM(require("path"), 1);
+var import_node_path39 = __toESM(require("path"), 1);
 
 // ../jtex/dist/utils.js
 function createCommand2(baseCommand, logFile) {
@@ -300989,7 +301403,7 @@ function pdfTexExportCommand(texFile, logFile, template) {
   return createCommand2(baseCommand, logFile);
 }
 function texMakeGlossariesCommand(texFile, logFile) {
-  const fileNameNoExt = import_node_path40.default.basename(texFile, ".tex");
+  const fileNameNoExt = import_node_path39.default.basename(texFile, ".tex");
   const baseCommand = `makeglossaries ${fileNameNoExt}`;
   return createCommand2(baseCommand, logFile);
 }
@@ -301041,7 +301455,7 @@ function mergeTexTemplateImports(current2, next) {
 }
 
 // ../jtex/dist/typst/imports.js
-var import_node_path41 = __toESM(require("path"), 1);
+var import_node_path40 = __toESM(require("path"), 1);
 function renderTypstImports(output2, templateImports, preamble) {
   const { macros: macros18, commands } = templateImports !== null && templateImports !== void 0 ? templateImports : {};
   const importStatements = [];
@@ -301049,7 +301463,7 @@ function renderTypstImports(output2, templateImports, preamble) {
   if (hasMacros)
     importStatements.push('#import "myst.typ": *');
   if (output2 && hasMacros) {
-    const mystTypst = import_node_path41.default.join(import_node_path41.default.dirname(output2), "myst.typ");
+    const mystTypst = import_node_path40.default.join(import_node_path40.default.dirname(output2), "myst.typ");
     writeFileToFolder(mystTypst, macros18.join("\n\n"));
   }
   if (commands && Object.keys(commands).length > 0) {
@@ -301072,7 +301486,7 @@ function mergeTypstTemplateImports(current2, next) {
 
 // ../jtex/dist/jtex.js
 var import_node_fs31 = __toESM(require("fs"), 1);
-var import_node_path42 = require("path");
+var import_node_path41 = require("path");
 var import_nunjucks = __toESM(require_nunjucks(), 1);
 
 // ../jtex/dist/render.js
@@ -301119,7 +301533,7 @@ function renderTemplate(template, opts) {
   if (!ext2) {
     throw new Error(`Cannot render template of kind: ${template.kind}`);
   }
-  if ((0, import_node_path42.extname)(opts.outputPath) !== ext2) {
+  if ((0, import_node_path41.extname)(opts.outputPath) !== ext2) {
     throw new Error(`outputPath must be a "${ext2}" file, not "${opts.outputPath}"`);
   }
   let content3;
@@ -301140,9 +301554,9 @@ function renderTemplate(template, opts) {
   };
   const env7 = getDefaultEnv(template);
   const rendered = env7.render(template.getTemplateFilename(), renderer);
-  const outputDirectory = (0, import_node_path42.dirname)(opts.outputPath);
+  const outputDirectory = (0, import_node_path41.dirname)(opts.outputPath);
   ensureDirectoryExists(outputDirectory);
-  template.copyTemplateFiles((0, import_node_path42.dirname)(opts.outputPath), { force: opts.force });
+  template.copyTemplateFiles((0, import_node_path41.dirname)(opts.outputPath), { force: opts.force });
   import_node_fs31.default.writeFileSync(opts.outputPath, opts.removeVersionComment ? rendered : `${commentSymbol(template.kind)} Created with jtex v.${version_default3}
 ${rendered}`);
 }
@@ -302527,11 +302941,11 @@ var plugin2 = function(opts) {
 var dist_default3 = plugin2;
 
 // ../myst-cli/dist/build/utils/getFileContent.js
-var import_node_path43 = require("path");
+var import_node_path42 = require("path");
 async function getFileContent(session, files, { projectPath, imageExtensions, extraLinkTransformers, extraTransforms, titleDepths, preFrontmatters }) {
   const toc = tic();
-  files = files.map((file) => (0, import_node_path43.resolve)(file));
-  projectPath = projectPath !== null && projectPath !== void 0 ? projectPath : (0, import_node_path43.resolve)(".");
+  files = files.map((file) => (0, import_node_path42.resolve)(file));
+  projectPath = projectPath !== null && projectPath !== void 0 ? projectPath : (0, import_node_path42.resolve)(".");
   const { project, pages } = await loadProject(session, projectPath);
   const projectFiles = pages.map((page) => page.file).filter((file) => !files.includes(file));
   const allFiles = [...files, ...projectFiles];
@@ -302593,7 +303007,7 @@ function cleanOutput(session, output2) {
 
 // ../myst-cli/dist/build/utils/bibtex.js
 var import_node_fs33 = __toESM(require("fs"), 1);
-var import_node_path44 = __toESM(require("path"), 1);
+var import_node_path43 = __toESM(require("path"), 1);
 function writeBibtexFromCitationRenderers(session, output2, content3) {
   const order3 = content3.map(({ references }) => {
     var _a6, _b;
@@ -302621,7 +303035,7 @@ function writeBibtexFromCitationRenderers(session, output2, content3) {
   if (!bibtexContent.length)
     return false;
   if (!import_node_fs33.default.existsSync(output2))
-    import_node_fs33.default.mkdirSync(import_node_path44.default.dirname(output2), { recursive: true });
+    import_node_fs33.default.mkdirSync(import_node_path43.default.dirname(output2), { recursive: true });
   import_node_fs33.default.writeFileSync(output2, bibtexContent.join("\n"));
   return true;
 }
@@ -302695,7 +303109,7 @@ async function localArticleToTexRaw(session, templateOptions, opts) {
   const toc = tic();
   const results = await Promise.all(content3.map(async ({ mdast: mdast2, frontmatter, references }, ind) => {
     await finalizeMdast(session, mdast2, frontmatter, fileArticles[ind].file, {
-      imageWriteFolder: import_node_path45.default.join(import_node_path45.default.dirname(output2), "files"),
+      imageWriteFolder: import_node_path44.default.join(import_node_path44.default.dirname(output2), "files"),
       imageAltOutputFolder: "files/",
       imageExtensions: TEX_IMAGE_EXTENSIONS,
       simplifyFigures: true
@@ -302708,12 +303122,12 @@ async function localArticleToTexRaw(session, templateOptions, opts) {
   } else {
     let includeContent = "";
     let fileInd = 0;
-    const { dir, name: name3, ext: ext2 } = import_node_path45.default.parse(output2);
+    const { dir, name: name3, ext: ext2 } = import_node_path44.default.parse(output2);
     articles.forEach((article) => {
       var _a6, _b, _c, _d2, _e;
       if (article.file) {
         const base5 = `${name3}-${(_b = (_a6 = content3[fileInd]) === null || _a6 === void 0 ? void 0 : _a6.slug) !== null && _b !== void 0 ? _b : fileInd}${ext2}`;
-        const includeFile = import_node_path45.default.format({ dir, ext: ext2, base: base5 });
+        const includeFile = import_node_path44.default.format({ dir, ext: ext2, base: base5 });
         let part = "";
         const { title, content_includes_title } = (_d2 = (_c = content3[fileInd]) === null || _c === void 0 ? void 0 : _c.frontmatter) !== null && _d2 !== void 0 ? _d2 : {};
         if (title && !content_includes_title) {
@@ -302740,7 +303154,7 @@ async function localArticleToTexTemplated(session, file, templateOptions, opts)
   var _a6;
   const { output: output2, articles, template } = templateOptions;
   const { projectPath, extraLinkTransformers, clean: clean3, ci } = opts !== null && opts !== void 0 ? opts : {};
-  const filesPath = import_node_path45.default.join(import_node_path45.default.dirname(output2), "files");
+  const filesPath = import_node_path44.default.join(import_node_path44.default.dirname(output2), "files");
   const fileArticles = articlesWithFile(articles);
   const content3 = await getFileContent(session, fileArticles.map((article) => article.file), {
     projectPath,
@@ -302749,7 +303163,7 @@ async function localArticleToTexTemplated(session, file, templateOptions, opts)
     titleDepths: fileArticles.map((article) => article.level),
     preFrontmatters: fileArticles.map((article) => filterKeys(article, [...PAGE_FRONTMATTER_KEYS, ...Object.keys(FRONTMATTER_ALIASES)]))
   });
-  const bibtexWritten = writeBibtexFromCitationRenderers(session, import_node_path45.default.join(import_node_path45.default.dirname(output2), DEFAULT_BIB_FILENAME), content3);
+  const bibtexWritten = writeBibtexFromCitationRenderers(session, import_node_path44.default.join(import_node_path44.default.dirname(output2), DEFAULT_BIB_FILENAME), content3);
   const warningLogFn = (message) => {
     addWarningForFile(session, file, message, "warn", {
       ruleId: RuleId.texRenders
@@ -302815,14 +303229,14 @@ async function localArticleToTexTemplated(session, file, templateOptions, opts)
   } else {
     const state = session.store.getState();
     frontmatter = (_a6 = selectors_exports.selectLocalProjectConfig(state, projectPath !== null && projectPath !== void 0 ? projectPath : ".")) !== null && _a6 !== void 0 ? _a6 : {};
-    const { dir, name: name3, ext: ext2 } = import_node_path45.default.parse(output2);
+    const { dir, name: name3, ext: ext2 } = import_node_path44.default.parse(output2);
     texContent = "";
     let fileInd = 0;
     articles.forEach((article) => {
       var _a7, _b, _c, _d2;
       if (article.file) {
         const includeFilename = `${name3}-${(_b = (_a7 = content3[fileInd]) === null || _a7 === void 0 ? void 0 : _a7.slug) !== null && _b !== void 0 ? _b : fileInd}`;
-        const includeFile = import_node_path45.default.format({ dir, ext: ext2, base: `${includeFilename}${ext2}` });
+        const includeFile = import_node_path44.default.format({ dir, ext: ext2, base: `${includeFilename}${ext2}` });
         let part = "";
         const { title, content_includes_title } = (_d2 = (_c = content3[fileInd]) === null || _c === void 0 ? void 0 : _c.frontmatter) !== null && _d2 !== void 0 ? _d2 : {};
         if (title && !content_includes_title) {
@@ -302882,7 +303296,7 @@ async function runTexZipExport(session, file, exportOptions, opts) {
     cleanOutput(session, exportOptions.output);
   const zipOutput = exportOptions.output;
   const texFolder = createTempFolder(session);
-  exportOptions.output = import_node_path45.default.join(texFolder, `${import_node_path45.default.basename(zipOutput, import_node_path45.default.extname(zipOutput))}.tex`);
+  exportOptions.output = import_node_path44.default.join(texFolder, `${import_node_path44.default.basename(zipOutput, import_node_path44.default.extname(zipOutput))}.tex`);
   await runTexExport(session, file, exportOptions, opts);
   session.log.info(`\u{1F910} Zipping tex outputs to ${zipOutput}`);
   const zip2 = new import_adm_zip2.default();
@@ -302898,7 +303312,7 @@ function hasGlossary(mdast2) {
 // ../myst-cli/dist/build/typst.js
 var import_adm_zip3 = __toESM(require_adm_zip(), 1);
 var import_node_fs34 = __toESM(require("fs"), 1);
-var import_node_path46 = __toESM(require("path"), 1);
+var import_node_path45 = __toESM(require("path"), 1);
 var import_which4 = __toESM(require_lib15(), 1);
 
 // ../myst-to-typst/dist/container.js
@@ -304094,7 +304508,7 @@ async function runTypstExecutable(session, typstFile) {
   if (!isTypstAvailable()) {
     throw new Error("The typst CLI must be installed to build PDFs with typst");
   }
-  if (import_node_path46.default.extname(typstFile) !== ".typ") {
+  if (import_node_path45.default.extname(typstFile) !== ".typ") {
     throw new Error(`invalid input file for typst executable: ${typstFile}`);
   }
   session.log.debug("Running typst compile");
@@ -304160,7 +304574,7 @@ async function localArticleToTypstRaw(session, templateOptions, opts) {
   const toc = tic();
   const results = await Promise.all(content3.map(async ({ mdast: mdast2, frontmatter, references }, ind) => {
     await finalizeMdast(session, mdast2, frontmatter, fileArticles[ind].file, {
-      imageWriteFolder: import_node_path46.default.join(import_node_path46.default.dirname(output2), "files"),
+      imageWriteFolder: import_node_path45.default.join(import_node_path45.default.dirname(output2), "files"),
       imageAltOutputFolder: "files/",
       imageExtensions: TYPST_IMAGE_EXTENSIONS,
       simplifyFigures: true
@@ -304171,14 +304585,14 @@ async function localArticleToTypstRaw(session, templateOptions, opts) {
   if (results.length === 1) {
     writeFileToFolder(output2, results[0].value);
   } else {
-    const { dir, name: name3, ext: ext2 } = import_node_path46.default.parse(output2);
+    const { dir, name: name3, ext: ext2 } = import_node_path45.default.parse(output2);
     let includeContent = "";
     let fileInd = 0;
     articles.forEach((article) => {
       var _a6, _b, _c, _d2;
       if (article.file) {
         const base5 = `${name3}-${(_b = (_a6 = content3[fileInd]) === null || _a6 === void 0 ? void 0 : _a6.slug) !== null && _b !== void 0 ? _b : fileInd}${ext2}`;
-        const includeFile = import_node_path46.default.format({ dir, ext: ext2, base: base5 });
+        const includeFile = import_node_path45.default.format({ dir, ext: ext2, base: base5 });
         let part = "";
         const { title, content_includes_title } = (_d2 = (_c = content3[fileInd]) === null || _c === void 0 ? void 0 : _c.frontmatter) !== null && _d2 !== void 0 ? _d2 : {};
         if (title && !content_includes_title) {
@@ -304205,7 +304619,7 @@ async function localArticleToTypstTemplated(session, file, templateOptions, opts
   var _a6;
   const { output: output2, articles, template } = templateOptions;
   const { projectPath, extraLinkTransformers, clean: clean3, ci } = opts !== null && opts !== void 0 ? opts : {};
-  const filesPath = import_node_path46.default.join(import_node_path46.default.dirname(output2), "files");
+  const filesPath = import_node_path45.default.join(import_node_path45.default.dirname(output2), "files");
   const fileArticles = articlesWithFile(articles);
   const content3 = await getFileContent(session, fileArticles.map((article) => article.file), {
     projectPath,
@@ -304214,7 +304628,7 @@ async function localArticleToTypstTemplated(session, file, templateOptions, opts
     titleDepths: fileArticles.map((article) => article.level),
     preFrontmatters: fileArticles.map((article) => filterKeys(article, [...PAGE_FRONTMATTER_KEYS, ...Object.keys(FRONTMATTER_ALIASES)]))
   });
-  const bibtexWritten = writeBibtexFromCitationRenderers(session, import_node_path46.default.join(import_node_path46.default.dirname(output2), DEFAULT_BIB_FILENAME2), content3);
+  const bibtexWritten = writeBibtexFromCitationRenderers(session, import_node_path45.default.join(import_node_path45.default.dirname(output2), DEFAULT_BIB_FILENAME2), content3);
   const warningLogFn = (message) => {
     addWarningForFile(session, file, message, "warn", {
       ruleId: RuleId.texRenders
@@ -304278,14 +304692,14 @@ async function localArticleToTypstTemplated(session, file, templateOptions, opts
   } else {
     const state = session.store.getState();
     frontmatter = (_a6 = selectors_exports.selectLocalProjectConfig(state, projectPath !== null && projectPath !== void 0 ? projectPath : ".")) !== null && _a6 !== void 0 ? _a6 : {};
-    const { dir, name: name3, ext: ext2 } = import_node_path46.default.parse(output2);
+    const { dir, name: name3, ext: ext2 } = import_node_path45.default.parse(output2);
     typstContent = "";
     let fileInd = 0;
     articles.forEach((article) => {
       var _a7, _b, _c, _d2;
       if (article.file) {
         const base5 = `${name3}-${(_b = (_a7 = content3[fileInd]) === null || _a7 === void 0 ? void 0 : _a7.slug) !== null && _b !== void 0 ? _b : fileInd}${ext2}`;
-        const includeFile = import_node_path46.default.format({ dir, ext: ext2, base: base5 });
+        const includeFile = import_node_path45.default.format({ dir, ext: ext2, base: base5 });
         const exports2 = renderTypstImports(false, collected);
         let part = "";
         const { title, content_includes_title } = (_d2 = (_c = content3[fileInd]) === null || _c === void 0 ? void 0 : _c.frontmatter) !== null && _d2 !== void 0 ? _d2 : {};
@@ -304348,7 +304762,7 @@ async function runTypstZipExport(session, file, exportOptions, opts) {
     cleanOutput(session, exportOptions.output);
   const zipOutput = exportOptions.output;
   const typFolder = createTempFolder(session);
-  exportOptions.output = import_node_path46.default.join(typFolder, `${import_node_path46.default.basename(zipOutput, import_node_path46.default.extname(zipOutput))}.typ`);
+  exportOptions.output = import_node_path45.default.join(typFolder, `${import_node_path45.default.basename(zipOutput, import_node_path45.default.extname(zipOutput))}.typ`);
   await runTypstExport(session, file, exportOptions, { ...opts !== null && opts !== void 0 ? opts : {}, clean: false });
   session.log.info(`\u{1F910} Zipping typst outputs to ${zipOutput}`);
   const zip2 = new import_adm_zip3.default();
@@ -304361,9 +304775,9 @@ async function runTypstPdfExport(session, file, exportOptions, opts) {
     cleanOutput(session, exportOptions.output);
   const pdfOutput = exportOptions.output;
   const typFolder = createTempFolder(session);
-  exportOptions.output = import_node_path46.default.join(typFolder, `${import_node_path46.default.basename(pdfOutput, import_node_path46.default.extname(pdfOutput))}.typ`);
+  exportOptions.output = import_node_path45.default.join(typFolder, `${import_node_path45.default.basename(pdfOutput, import_node_path45.default.extname(pdfOutput))}.typ`);
   await runTypstExport(session, file, exportOptions, { ...opts !== null && opts !== void 0 ? opts : {}, clean: false });
-  const writeFolder = import_node_path46.default.dirname(pdfOutput);
+  const writeFolder = import_node_path45.default.dirname(pdfOutput);
   session.log.info(`\u{1F5A8}  Rendering typst pdf to ${pdfOutput}`);
   if (!import_node_fs34.default.existsSync(writeFolder))
     import_node_fs34.default.mkdirSync(writeFolder, { recursive: true });
@@ -304373,7 +304787,7 @@ async function runTypstPdfExport(session, file, exportOptions, opts) {
 
 // ../myst-cli/dist/build/docx/single.js
 var import_node_fs36 = __toESM(require("fs"), 1);
-var import_node_path47 = __toESM(require("path"), 1);
+var import_node_path46 = __toESM(require("path"), 1);
 
 // ../myst-to-docx/dist/serializer.js
 var import_docx4 = __toESM(require_build(), 1);
@@ -305099,9 +305513,9 @@ function defaultWordRenderer(session, data, doc, opts, staticPath, vfile2) {
   selectAll("footnoteDefinition", mdast2).forEach((footnote2) => {
     serializer.render(footnote2);
   });
-  const logo = import_node_path47.default.join(staticPath, "logo.png");
+  const logo = import_node_path46.default.join(staticPath, "logo.png");
   const docfooter = import_node_fs36.default.existsSync(logo) && !opts.hideFooter ? createFooter(logo) : void 0;
-  const styles16 = import_node_path47.default.join(staticPath, "styles.xml");
+  const styles16 = import_node_path46.default.join(staticPath, "styles.xml");
   const docstyles = import_node_fs36.default.existsSync(styles16) ? import_node_fs36.default.readFileSync(styles16).toString() : void 0;
   return createDocFromState(serializer, docfooter, docstyles);
 }
@@ -305161,7 +305575,7 @@ async function runWordExport(session, file, exportOptions, opts) {
 }
 
 // ../myst-cli/dist/build/jats/single.js
-var import_node_path48 = __toESM(require("path"), 1);
+var import_node_path47 = __toESM(require("path"), 1);
 
 // ../myst-to-jats/dist/index.js
 var import_xml_js2 = __toESM(require_lib19(), 1);
@@ -307651,7 +308065,7 @@ async function runJatsExport(session, sourceFile, exportOptions, opts) {
   });
   await Promise.all(processedContents.map(({ mdast: mdast2, frontmatter, file }) => {
     return finalizeMdast(session, mdast2, frontmatter, file, {
-      imageWriteFolder: import_node_path48.default.join(import_node_path48.default.dirname(output2), "files"),
+      imageWriteFolder: import_node_path47.default.join(import_node_path47.default.dirname(output2), "files"),
       imageAltOutputFolder: "files/",
       imageExtensions: KNOWN_IMAGE_EXTENSIONS,
       simplifyFigures: false
@@ -307694,11 +308108,11 @@ async function runJatsExport(session, sourceFile, exportOptions, opts) {
 }
 
 // ../myst-cli/dist/build/pdf/single.js
-var import_node_path50 = __toESM(require("path"), 1);
+var import_node_path49 = __toESM(require("path"), 1);
 
 // ../myst-cli/dist/build/pdf/create.js
 var import_node_fs37 = __toESM(require("fs"), 1);
-var import_node_path49 = __toESM(require("path"), 1);
+var import_node_path48 = __toESM(require("path"), 1);
 var import_util5 = __toESM(require("util"), 1);
 
 // ../myst-cli/dist/build/pdf/utils.js
@@ -307714,8 +308128,8 @@ function isMakeglossariesAvailable() {
 var copyFile = import_util5.default.promisify(import_node_fs37.default.copyFile);
 function copyContents(srcFolder, destFolder) {
   import_node_fs37.default.readdirSync(srcFolder).forEach((item) => {
-    const srcItemPath = import_node_path49.default.join(srcFolder, item);
-    const destItemPath = import_node_path49.default.join(destFolder, item);
+    const srcItemPath = import_node_path48.default.join(srcFolder, item);
+    const destItemPath = import_node_path48.default.join(destFolder, item);
     if (import_node_fs37.default.lstatSync(srcItemPath).isDirectory()) {
       import_node_fs37.default.mkdirSync(destItemPath);
       copyContents(srcItemPath, destItemPath);
@@ -307725,12 +308139,12 @@ function copyContents(srcFolder, destFolder) {
   });
 }
 function getLogOutputFolder(pdfOutput) {
-  const pdfBasename = import_node_path49.default.basename(pdfOutput, import_node_path49.default.extname(pdfOutput));
-  return import_node_path49.default.join(import_node_path49.default.dirname(pdfOutput), `${pdfBasename}_pdf_logs`);
+  const pdfBasename = import_node_path48.default.basename(pdfOutput, import_node_path48.default.extname(pdfOutput));
+  return import_node_path48.default.join(import_node_path48.default.dirname(pdfOutput), `${pdfBasename}_pdf_logs`);
 }
 function getTexOutputFolder(pdfOutput) {
-  const pdfBasename = import_node_path49.default.basename(pdfOutput, import_node_path49.default.extname(pdfOutput));
-  return import_node_path49.default.join(import_node_path49.default.dirname(pdfOutput), `${pdfBasename}_pdf_tex`);
+  const pdfBasename = import_node_path48.default.basename(pdfOutput, import_node_path48.default.extname(pdfOutput));
+  return import_node_path48.default.join(import_node_path48.default.dirname(pdfOutput), `${pdfBasename}_pdf_tex`);
 }
 async function createPdfGivenTexExport(session, texExportOptions, pdfOutput, copyLogs, clean3, glossaries) {
   if (clean3)
@@ -307773,8 +308187,8 @@ async function createPdfGivenTexExport(session, texExportOptions, pdfOutput, cop
   const pdfBuildExists = import_node_fs37.default.existsSync(pdfBuild);
   const logBuildExists = import_node_fs37.default.existsSync(logBuild);
   const texLogBuildExists = import_node_fs37.default.existsSync(texLogBuild);
-  if (pdfBuildExists && !import_node_fs37.default.existsSync(import_node_path49.default.dirname(pdfOutput))) {
-    import_node_fs37.default.mkdirSync(import_node_path49.default.dirname(pdfOutput), { recursive: true });
+  if (pdfBuildExists && !import_node_fs37.default.existsSync(import_node_path48.default.dirname(pdfOutput))) {
+    import_node_fs37.default.mkdirSync(import_node_path48.default.dirname(pdfOutput), { recursive: true });
   }
   if (pdfBuildExists) {
     session.log.info(toc(`\u{1F4C4} Exported PDF ${templateLogString} in %s, copying to ${pdfOutput}`));
@@ -307784,8 +308198,8 @@ async function createPdfGivenTexExport(session, texExportOptions, pdfOutput, cop
     fileError(vfile2, `Could not find ${pdfBuild} as expected`, { ruleId: RuleId.pdfBuilds });
   }
   if (copyLogs) {
-    if ((logBuildExists || texLogBuildExists) && !import_node_fs37.default.existsSync(import_node_path49.default.dirname(logOutput))) {
-      import_node_fs37.default.mkdirSync(import_node_path49.default.dirname(logOutput), { recursive: true });
+    if ((logBuildExists || texLogBuildExists) && !import_node_fs37.default.existsSync(import_node_path48.default.dirname(logOutput))) {
+      import_node_fs37.default.mkdirSync(import_node_path48.default.dirname(logOutput), { recursive: true });
     }
     if (logBuildExists) {
       session.log.debug(`Copying log file: ${logOutput}`);
@@ -307807,23 +308221,23 @@ async function createPdfGivenTexExport(session, texExportOptions, pdfOutput, cop
 }
 function ensurePaths(session, texOutput, pdfOutput) {
   const buildPath = createTempFolder(session);
-  const texFile = import_node_path49.default.basename(texOutput);
-  const texBuild = import_node_path49.default.join(buildPath, texFile);
-  copyContents(import_node_path49.default.dirname(texOutput), buildPath);
+  const texFile = import_node_path48.default.basename(texOutput);
+  const texBuild = import_node_path48.default.join(buildPath, texFile);
+  copyContents(import_node_path48.default.dirname(texOutput), buildPath);
   if (!import_node_fs37.default.existsSync(texBuild)) {
     throw Error(`Error exporting: ${pdfOutput}
 Could not find tex file: ${texOutput}`);
   }
-  const pdfBasename = import_node_path49.default.basename(pdfOutput, import_node_path49.default.extname(pdfOutput));
+  const pdfBasename = import_node_path48.default.basename(pdfOutput, import_node_path48.default.extname(pdfOutput));
   const pdfFile = `${pdfBasename}.pdf`;
-  const pdfBuild = import_node_path49.default.join(buildPath, pdfFile);
+  const pdfBuild = import_node_path48.default.join(buildPath, pdfFile);
   const logFile = `${pdfBasename}.log`;
   const texLogFile = `${pdfBasename}.shell.log`;
-  const logBuild = import_node_path49.default.join(buildPath, logFile);
-  const texLogBuild = import_node_path49.default.join(buildPath, texLogFile);
+  const logBuild = import_node_path48.default.join(buildPath, logFile);
+  const texLogBuild = import_node_path48.default.join(buildPath, texLogFile);
   const logOutputFolder = getLogOutputFolder(pdfOutput);
-  const logOutput = import_node_path49.default.join(logOutputFolder, logFile);
-  const texLogOutput = import_node_path49.default.join(logOutputFolder, texLogFile);
+  const logOutput = import_node_path48.default.join(logOutputFolder, logFile);
+  const texLogOutput = import_node_path48.default.join(logOutputFolder, texLogFile);
   return {
     buildPath,
     texFile,
@@ -307911,23 +308325,23 @@ ${docLinks.installLatex}`);
 
 // ../myst-cli/dist/build/pdf/single.js
 function texExportOptionsFromPdf(session, pdfExp, keepTex, clean3) {
-  const basename3 = import_node_path50.default.basename(pdfExp.output, import_node_path50.default.extname(pdfExp.output));
+  const basename3 = import_node_path49.default.basename(pdfExp.output, import_node_path49.default.extname(pdfExp.output));
   const outputTexFile = `${basename3}.tex`;
   let output2;
   if (keepTex) {
     const texOutputFolder = getTexOutputFolder(pdfExp.output);
     if (clean3)
       cleanOutput(session, texOutputFolder);
-    output2 = import_node_path50.default.join(texOutputFolder, outputTexFile);
+    output2 = import_node_path49.default.join(texOutputFolder, outputTexFile);
   } else {
-    output2 = import_node_path50.default.join(createTempFolder(session), outputTexFile);
+    output2 = import_node_path49.default.join(createTempFolder(session), outputTexFile);
   }
   return { ...pdfExp, format: ExportFormats.tex, output: output2 };
 }
 
 // ../myst-cli/dist/build/meca/index.js
 var import_node_fs38 = __toESM(require("fs"), 1);
-var import_node_path51 = __toESM(require("path"), 1);
+var import_node_path50 = __toESM(require("path"), 1);
 var import_adm_zip4 = __toESM(require_adm_zip(), 1);
 var import_mime_types2 = __toESM(require_mime_types(), 1);
 
@@ -308011,7 +308425,7 @@ function mediaTypeFromFile(file) {
   const mediaType = import_mime_types2.default.lookup(file);
   if (mediaType)
     return mediaType;
-  const ext2 = import_node_path51.default.extname(file);
+  const ext2 = import_node_path50.default.extname(file);
   if (ext2 === ".ipynb")
     return "application/x-ipynb+json";
   if (ext2 === ".bib")
@@ -308021,7 +308435,7 @@ function mediaTypeFromFile(file) {
 function addManifestItem(manifestItems, itemType, mecaFolder, file, mediaType) {
   if (!file)
     return;
-  const hrefPath = import_node_path51.default.relative(mecaFolder, file).split(import_node_path51.default.sep).join("/");
+  const hrefPath = import_node_path50.default.relative(mecaFolder, file).split(import_node_path50.default.sep).join("/");
   const hrefTrail = isDirectory(file) ? "/" : "";
   manifestItems.push({
     href: `${hrefPath}${hrefTrail}`,
@@ -308030,7 +308444,7 @@ function addManifestItem(manifestItems, itemType, mecaFolder, file, mediaType) {
   });
 }
 function bundleFolder(folder) {
-  return import_node_path51.default.join(folder, "bundle");
+  return import_node_path50.default.join(folder, "bundle");
 }
 async function copyFilesFromConfig(session, projectPath, mecaFolder, manifestItems, errorLogFn) {
   var _a6, _b;
@@ -308045,9 +308459,9 @@ async function copyFilesFromConfig(session, projectPath, mecaFolder, manifestIte
   ];
   if (entries2.length) {
     await Promise.all(entries2.map(async ({ itemType, entry }) => {
-      const resolvedEntry = [...projectPath.split(import_node_path51.default.sep), entry].join("/");
+      const resolvedEntry = [...projectPath.split(import_node_path50.default.sep), entry].join("/");
       const matches4 = await glob(resolvedEntry);
-      matches4.map((match3) => match3.split("/").join(import_node_path51.default.sep)).filter((match3) => !isDirectory(match3)).forEach((match3) => {
+      matches4.map((match3) => match3.split("/").join(import_node_path50.default.sep)).filter((match3) => !isDirectory(match3)).forEach((match3) => {
         const destination = copyFileMaintainPath(session, match3, projectPath, bundleFolder(mecaFolder), errorLogFn);
         addManifestItem(manifestItems, itemType, mecaFolder, destination);
       });
@@ -308070,7 +308484,7 @@ async function copyDependentFiles(session, sourceFile, projectPath, mecaFolder,
     ...urlNodes.map((node3) => node3.url),
     ...fileNodes.map((node3) => node3.file),
     frontmatter === null || frontmatter === void 0 ? void 0 : frontmatter.thumbnail
-  ].filter((file) => !!file).map((file) => import_node_path51.default.resolve(import_node_path51.default.dirname(sourceFile), file)).filter((file) => import_node_fs38.default.existsSync(file));
+  ].filter((file) => !!file).map((file) => import_node_path50.default.resolve(import_node_path50.default.dirname(sourceFile), file)).filter((file) => import_node_fs38.default.existsSync(file));
   filesToCopy.forEach((file) => {
     const dependency = copyFileMaintainPath(session, file, projectPath, bundleFolder(mecaFolder), errorLogFn);
     addManifestItem(manifestItems, "article-source", mecaFolder, dependency);
@@ -308078,7 +308492,7 @@ async function copyDependentFiles(session, sourceFile, projectPath, mecaFolder,
 }
 function writeMecaManifest(manifestItems, mecaFolder) {
   const manifest = createManifestXml(manifestItems);
-  import_node_fs38.default.writeFileSync(import_node_path51.default.join(mecaFolder, "manifest.xml"), manifest);
+  import_node_fs38.default.writeFileSync(import_node_path50.default.join(mecaFolder, "manifest.xml"), manifest);
 }
 async function runMecaExport(session, sourceFile, exportOptions, opts) {
   var _a6;
@@ -308099,13 +308513,13 @@ async function runMecaExport(session, sourceFile, exportOptions, opts) {
     projectPath
   });
   if (jatsExports.length === 0 && articleFile) {
-    const jatsOutput = import_node_path51.default.join(mecaFolder, "article.xml");
+    const jatsOutput = import_node_path50.default.join(mecaFolder, "article.xml");
     await runJatsExport(session, sourceFile, { ...exportOptions, output: jatsOutput }, { projectPath, clean: clean3, extraLinkTransformers });
     addManifestItem(manifestItems, "article-metadata", mecaFolder, jatsOutput);
-    const jatsFiles = import_node_path51.default.join(mecaFolder, "files");
+    const jatsFiles = import_node_path50.default.join(mecaFolder, "files");
     if (import_node_fs38.default.existsSync(jatsFiles)) {
       import_node_fs38.default.readdirSync(jatsFiles).forEach((file) => {
-        addManifestItem(manifestItems, "article-supporting-file", mecaFolder, import_node_path51.default.join(mecaFolder, "files", file));
+        addManifestItem(manifestItems, "article-supporting-file", mecaFolder, import_node_path50.default.join(mecaFolder, "files", file));
       });
     }
   } else if (jatsExports.length === 0) {
@@ -308129,11 +308543,11 @@ To resolve this, run: myst build --all`, {
     if (jatsDest) {
       addManifestItem(manifestItems, "article-metadata", mecaFolder, jatsDest);
     }
-    const jatsFiles = import_node_path51.default.join(import_node_path51.default.dirname(jatsOutput), "files");
+    const jatsFiles = import_node_path50.default.join(import_node_path50.default.dirname(jatsOutput), "files");
     if (import_node_fs38.default.existsSync(jatsFiles)) {
       import_node_fs38.default.readdirSync(jatsFiles).forEach((file) => {
-        const src = import_node_path51.default.join(jatsFiles, file);
-        const fileDest = copyFileToFolder(session, src, import_node_path51.default.join(mecaFolder, "files"), fileCopyErrorLogFn);
+        const src = import_node_path50.default.join(jatsFiles, file);
+        const fileDest = copyFileToFolder(session, src, import_node_path50.default.join(mecaFolder, "files"), fileCopyErrorLogFn);
         addManifestItem(manifestItems, "article-supporting-file", mecaFolder, fileDest);
       });
     }
@@ -308141,7 +308555,7 @@ To resolve this, run: myst build --all`, {
   const manuscriptExports = (await collectExportOptions(session, articleFile ? [articleFile] : [], [ExportFormats.docx, ExportFormats.pdf, ExportFormats.tex], {
     projectPath
   })).filter((exp) => {
-    return exp.format !== ExportFormats.tex || import_node_path51.default.extname(exp.output) === ".zip";
+    return exp.format !== ExportFormats.tex || import_node_path50.default.extname(exp.output) === ".zip";
   });
   manuscriptExports.forEach(({ output: manuscriptOutput }) => {
     if (!import_node_fs38.default.existsSync(manuscriptOutput)) {
@@ -308162,12 +308576,12 @@ To resolve this, run: myst build --all`, {
       addManifestItem(manifestItems, "article-source", mecaFolder, configDest);
       await copyFilesFromConfig(session, projectPath, mecaFolder, manifestItems, fileCopyErrorLogFn);
     }
-    if (import_node_fs38.default.existsSync(import_node_path51.default.join(projectPath, "_toc.yml"))) {
-      copyFileToFolder(session, import_node_path51.default.join(projectPath, "_toc.yml"), bundle, fileCopyErrorLogFn);
+    if (import_node_fs38.default.existsSync(import_node_path50.default.join(projectPath, "_toc.yml"))) {
+      copyFileToFolder(session, import_node_path50.default.join(projectPath, "_toc.yml"), bundle, fileCopyErrorLogFn);
     } else {
       writeTOCFromProject(project, bundle);
     }
-    addManifestItem(manifestItems, "article-source", mecaFolder, import_node_path51.default.join(bundle, "_toc.yml"));
+    addManifestItem(manifestItems, "article-source", mecaFolder, import_node_path50.default.join(bundle, "_toc.yml"));
     const projectPages = [
       { page: project.file, itemType: "article-source" },
       ...project.pages.filter((page) => {
@@ -308189,7 +308603,7 @@ To resolve this, run: myst build --all`, {
     addManifestItem(manifestItems, "article-source", mecaFolder, articleDest);
   }
   if (import_node_fs38.default.existsSync(bundle)) {
-    addManifestItem(manifestItems, "article-source-directory", mecaFolder, import_node_path51.default.join(bundle, ""), "application/x-directory");
+    addManifestItem(manifestItems, "article-source-directory", mecaFolder, import_node_path50.default.join(bundle, ""), "application/x-directory");
   }
   writeMecaManifest(manifestItems, mecaFolder);
   const zip2 = new import_adm_zip4.default();
@@ -308201,7 +308615,7 @@ To resolve this, run: myst build --all`, {
 }
 
 // ../myst-cli/dist/build/md/index.js
-var import_node_path52 = __toESM(require("path"), 1);
+var import_node_path51 = __toESM(require("path"), 1);
 
 // ../../node_modules/character-entities/index.js
 var characterEntities = {
@@ -311776,7 +312190,7 @@ var handle5 = {
 };
 
 // ../../node_modules/mdast-util-to-markdown/lib/join.js
-var join17 = [joinDefaults];
+var join15 = [joinDefaults];
 function joinDefaults(left2, right2, parent2, state) {
   if (right2.type === "code" && formatCodeAsIndented(right2, state) && (left2.type === "list" || left2.type === right2.type && formatCodeAsIndented(left2, state))) {
     return false;
@@ -311948,7 +312362,7 @@ function toMarkdown(tree, options = {}) {
     // @ts-expect-error: we’ll add `handle` later.
     handle: void 0
   };
-  configure(state, { unsafe, join: join17, handlers: handle5 });
+  configure(state, { unsafe, join: join15, handlers: handle5 });
   configure(state, options);
   if (state.options.tightDefinitions) {
     configure(state, { join: [joinDefinition] });
@@ -312591,7 +313005,7 @@ async function runMdExport(session, sourceFile, exportOptions, opts) {
     ]
   });
   await finalizeMdast(session, mdast2, frontmatter, article.file, {
-    imageWriteFolder: import_node_path52.default.join(import_node_path52.default.dirname(output2), "files"),
+    imageWriteFolder: import_node_path51.default.join(import_node_path51.default.dirname(output2), "files"),
     imageAltOutputFolder: "files/",
     imageExtensions: KNOWN_IMAGE_EXTENSIONS,
     simplifyFigures: false,
@@ -312645,21 +313059,21 @@ async function _localArticleExport(session, exportOptionsList, opts) {
     const { $file, $project, ...exportOptions } = exportOptionsWithFile;
     const { format, output: output2 } = exportOptions;
     const sessionClone = session.clone();
-    const fileProjectPath = (_a6 = projectPath !== null && projectPath !== void 0 ? projectPath : $project) !== null && _a6 !== void 0 ? _a6 : findCurrentProjectAndLoad(sessionClone, import_node_path53.default.dirname($file));
+    const fileProjectPath = (_a6 = projectPath !== null && projectPath !== void 0 ? projectPath : $project) !== null && _a6 !== void 0 ? _a6 : findCurrentProjectAndLoad(sessionClone, import_node_path52.default.dirname($file));
     if (fileProjectPath) {
       await loadProjectFromDisk(sessionClone, fileProjectPath);
     }
     let exportFn;
     if (format === ExportFormats.tex) {
-      if (import_node_path53.default.extname(output2) === ".zip") {
+      if (import_node_path52.default.extname(output2) === ".zip") {
         exportFn = runTexZipExport;
       } else {
         exportFn = runTexExport;
       }
     } else if (format === ExportFormats.typst) {
-      if (import_node_path53.default.extname(output2) === ".zip") {
+      if (import_node_path52.default.extname(output2) === ".zip") {
         exportFn = runTypstZipExport;
-      } else if (import_node_path53.default.extname(output2) === ".pdf") {
+      } else if (import_node_path52.default.extname(output2) === ".pdf") {
         exportFn = runTypstPdfExport;
       } else {
         exportFn = runTypstExport;
@@ -312697,7 +313111,7 @@ async function localArticleExport(session, exportOptionsList, opts) {
 
 // ../myst-cli/dist/build/html/index.js
 var import_fs_extra = __toESM(require_lib20(), 1);
-var import_node_path56 = __toESM(require("path"), 1);
+var import_node_path55 = __toESM(require("path"), 1);
 
 // ../myst-cli/dist/build/site/start.js
 var import_cors = __toESM(require_lib21(), 1);
@@ -312838,7 +313252,7 @@ function portNumbers(from4, to) {
 }
 
 // ../myst-cli/dist/build/site/start.js
-var import_node_path55 = require("path");
+var import_node_path54 = require("path");
 
 // ../../node_modules/ws/wrapper.mjs
 var import_stream = __toESM(require_stream(), 1);
@@ -312898,7 +313312,7 @@ function createServerLogger(session, ready) {
 
 // ../myst-cli/dist/build/site/watch.js
 var import_chokidar2 = __toESM(require_chokidar(), 1);
-var import_node_path54 = require("path");
+var import_node_path53 = require("path");
 function watchConfigAndPublic(session, serverReload, opts) {
   const watchFiles = ["public"];
   const siteConfigFile = selectors_exports.selectCurrentSiteFile(session.store.getState());
@@ -312912,7 +313326,7 @@ function watchConfigAndPublic(session, serverReload, opts) {
 function triggerProjectReload(session, file, eventType, projectPath) {
   const state = session.store.getState();
   const projectConfigFile = projectPath ? selectors_exports.selectLocalConfigFile(state, projectPath) : selectors_exports.selectCurrentProjectFile(state);
-  if (file === projectConfigFile || (0, import_node_path54.basename)(file) === "_toc.yml")
+  if (file === projectConfigFile || (0, import_node_path53.basename)(file) === "_toc.yml")
     return true;
   if (["add", "unlink"].includes(eventType))
     return true;
@@ -312921,11 +313335,11 @@ function triggerProjectReload(session, file, eventType, projectPath) {
 async function processorFn(session, file, eventType, siteProject, serverReload, opts) {
   if (file) {
     changeFile(session, file, eventType);
-    if (KNOWN_FAST_BUILDS.has((0, import_node_path54.extname)(file)) && eventType === "unlink") {
+    if (KNOWN_FAST_BUILDS.has((0, import_node_path53.extname)(file)) && eventType === "unlink") {
       session.log.info(`\u{1F6AE} File ${file} deleted...`);
     }
   }
-  if (!siteProject || !file || !KNOWN_FAST_BUILDS.has((0, import_node_path54.extname)(file)) || ["add", "unlink"].includes(eventType)) {
+  if (!siteProject || !file || !KNOWN_FAST_BUILDS.has((0, import_node_path53.extname)(file)) || ["add", "unlink"].includes(eventType)) {
     let reloadProject = false;
     if (file && triggerProjectReload(session, file, eventType, siteProject === null || siteProject === void 0 ? void 0 : siteProject.path)) {
       session.log.info("\u{1F4A5} Triggered full project load and site rebuild");
@@ -313010,7 +313424,7 @@ function watchContent(session, serverReload, opts) {
     return Boolean(proj.path);
   });
   localProjects.forEach((proj) => {
-    const ignored = proj.path === "." ? localProjects.filter(({ path: path42 }) => path42 !== ".").map(({ path: path42 }) => (0, import_node_path54.join)(path42, "*")) : [];
+    const ignored = proj.path === "." ? localProjects.filter(({ path: path42 }) => path42 !== ".").map(({ path: path42 }) => (0, import_node_path53.join)(path42, "*")) : [];
     if (siteConfigFile)
       ignored.push(siteConfigFile);
     const projectConfig = selectors_exports.selectLocalProjectConfig(state, proj.path);
@@ -313043,9 +313457,9 @@ async function startContentServer(session, opts) {
   });
   app.use("/", import_express.default.static(session.publicPath()));
   app.use("/content", import_express.default.static(session.contentPath()));
-  app.use("/config.json", import_express.default.static((0, import_node_path55.join)(session.sitePath(), "config.json")));
-  app.use("/objects.inv", import_express.default.static((0, import_node_path55.join)(session.sitePath(), "objects.inv")));
-  app.use("/myst.xref.json", import_express.default.static((0, import_node_path55.join)(session.sitePath(), "myst.xref.json")));
+  app.use("/config.json", import_express.default.static((0, import_node_path54.join)(session.sitePath(), "config.json")));
+  app.use("/objects.inv", import_express.default.static((0, import_node_path54.join)(session.sitePath(), "objects.inv")));
+  app.use("/myst.xref.json", import_express.default.static((0, import_node_path54.join)(session.sitePath(), "myst.xref.json")));
   const server = app.listen(port, () => {
     session.log.debug(`Content server listening on port ${port}`);
   });
@@ -313160,24 +313574,24 @@ async function currentSiteRoutes(session, host, baseurl, opts) {
     const siteIndex = baseurl ? `/${proj.index}` : "";
     const pages = proj.pages.filter((page) => !!page.slug);
     return [
-      { url: `${host}${projSlug}${siteIndex}`, path: import_node_path56.default.join((_a7 = proj.slug) !== null && _a7 !== void 0 ? _a7 : "", "index.html") },
+      { url: `${host}${projSlug}${siteIndex}`, path: import_node_path55.default.join((_a7 = proj.slug) !== null && _a7 !== void 0 ? _a7 : "", "index.html") },
       ...pages.map((page) => {
         var _a8;
         return {
           url: `${host}${projSlug}/${page.slug}`,
-          path: import_node_path56.default.join((_a8 = proj.slug) !== null && _a8 !== void 0 ? _a8 : "", `${page.slug}.html`)
+          path: import_node_path55.default.join((_a8 = proj.slug) !== null && _a8 !== void 0 ? _a8 : "", `${page.slug}.html`)
         };
       }),
       // Download all of the configured JSON
       {
         url: `${host}${projSlug}/${proj.index}.json`,
-        path: import_node_path56.default.join((_b2 = proj.slug) !== null && _b2 !== void 0 ? _b2 : "", `${proj.index}.json`)
+        path: import_node_path55.default.join((_b2 = proj.slug) !== null && _b2 !== void 0 ? _b2 : "", `${proj.index}.json`)
       },
       ...pages.map((page) => {
         var _a8;
         return {
           url: `${host}${projSlug}/${page.slug}.json`,
-          path: import_node_path56.default.join((_a8 = proj.slug) !== null && _a8 !== void 0 ? _a8 : "", `${page.slug}.json`)
+          path: import_node_path55.default.join((_a8 = proj.slug) !== null && _a8 !== void 0 ? _a8 : "", `${page.slug}.json`)
         };
       }),
       // Download other assets
@@ -313191,16 +313605,16 @@ async function currentSiteRoutes(session, host, baseurl, opts) {
 var ASSETS_FOLDER = "myst_assets_folder";
 function rewriteAssetsFolder(directory, baseurl) {
   import_fs_extra.default.readdirSync(directory).forEach((filename) => {
-    const file = import_node_path56.default.join(directory, filename);
+    const file = import_node_path55.default.join(directory, filename);
     if (import_fs_extra.default.statSync(file).isDirectory()) {
       rewriteAssetsFolder(file, baseurl);
       return;
     }
-    if (import_node_path56.default.extname(file) === ".map") {
+    if (import_node_path55.default.extname(file) === ".map") {
       import_fs_extra.default.rmSync(file);
       return;
     }
-    if (![".html", ".js", ".json"].includes(import_node_path56.default.extname(file)))
+    if (![".html", ".js", ".json"].includes(import_node_path55.default.extname(file)))
       return;
     const data = import_fs_extra.default.readFileSync(file).toString();
     const modified = data.replace(new RegExp(`\\/${ASSETS_FOLDER}\\/`, "g"), `${baseurl || ""}/build/`);
@@ -313225,7 +313639,7 @@ function get_baseurl(session) {
 async function buildHtml(session, opts) {
   const template = await getMystTemplate(session, opts);
   const baseurl = get_baseurl(session);
-  const htmlDir = import_node_path56.default.join(session.buildPath(), "html");
+  const htmlDir = import_node_path55.default.join(session.buildPath(), "html");
   import_fs_extra.default.rmSync(htmlDir, { recursive: true, force: true });
   import_fs_extra.default.mkdirSync(htmlDir, { recursive: true });
   const appServer = await startServer(session, { ...opts, buildStatic: true, baseurl });
@@ -313240,15 +313654,15 @@ async function buildHtml(session, opts) {
       return;
     }
     const content3 = await resp.text();
-    writeFileToFolder(import_node_path56.default.join(htmlDir, page.path), content3);
+    writeFileToFolder(import_node_path55.default.join(htmlDir, page.path), content3);
   }));
   appServer.stop();
-  const templateBuildDir = import_node_path56.default.join(template.templatePath, "public");
+  const templateBuildDir = import_node_path55.default.join(template.templatePath, "public");
   import_fs_extra.default.copySync(templateBuildDir, htmlDir);
-  import_fs_extra.default.copySync(session.publicPath(), import_node_path56.default.join(htmlDir, "build"));
-  import_fs_extra.default.copySync(import_node_path56.default.join(session.sitePath(), "config.json"), import_node_path56.default.join(htmlDir, "config.json"));
-  import_fs_extra.default.copySync(import_node_path56.default.join(session.sitePath(), "objects.inv"), import_node_path56.default.join(htmlDir, "objects.inv"));
-  import_fs_extra.default.copySync(import_node_path56.default.join(session.sitePath(), "myst.xref.json"), import_node_path56.default.join(htmlDir, "myst.xref.json"));
+  import_fs_extra.default.copySync(session.publicPath(), import_node_path55.default.join(htmlDir, "build"));
+  import_fs_extra.default.copySync(import_node_path55.default.join(session.sitePath(), "config.json"), import_node_path55.default.join(htmlDir, "config.json"));
+  import_fs_extra.default.copySync(import_node_path55.default.join(session.sitePath(), "objects.inv"), import_node_path55.default.join(htmlDir, "objects.inv"));
+  import_fs_extra.default.copySync(import_node_path55.default.join(session.sitePath(), "myst.xref.json"), import_node_path55.default.join(htmlDir, "myst.xref.json"));
   rewriteAssetsFolder(htmlDir, baseurl);
   process.exit(0);
 }
@@ -313309,7 +313723,7 @@ function getProjectPaths(session) {
   var _a6, _b, _c;
   const siteConfig = selectors_exports.selectCurrentSiteConfig(session.store.getState());
   const projectPaths = [
-    (_a6 = selectors_exports.selectCurrentProjectPath(session.store.getState())) !== null && _a6 !== void 0 ? _a6 : import_node_path57.default.resolve("."),
+    (_a6 = selectors_exports.selectCurrentProjectPath(session.store.getState())) !== null && _a6 !== void 0 ? _a6 : import_node_path56.default.resolve("."),
     ...(_c = (_b = siteConfig === null || siteConfig === void 0 ? void 0 : siteConfig.projects) === null || _b === void 0 ? void 0 : _b.map((proj) => proj.path).filter((projectPath) => !!projectPath)) !== null && _c !== void 0 ? _c : []
   ];
   return uniqueArray(projectPaths);
@@ -313317,7 +313731,7 @@ function getProjectPaths(session) {
 async function collectAllBuildExportOptions(session, files, opts) {
   var _a6;
   const { output: output2 } = opts;
-  files = files.map((file) => import_node_path57.default.resolve(file));
+  files = files.map((file) => import_node_path56.default.resolve(file));
   if (output2 && files.length !== 1) {
     throw new Error("When specifying a named output for export, you must list exactly one file.");
   }
@@ -313326,16 +313740,16 @@ async function collectAllBuildExportOptions(session, files, opts) {
     throw new Error(`When specifying output, you can only request one format`);
   }
   let exportOptionsList;
-  const projectPath = findCurrentProjectAndLoad(session, files[0] ? import_node_path57.default.dirname(files[0]) : ".");
+  const projectPath = findCurrentProjectAndLoad(session, files[0] ? import_node_path56.default.dirname(files[0]) : ".");
   if (projectPath)
     await loadProjectFromDisk(session, projectPath);
   if (output2) {
     session.log.debug(`Exporting formats: "${requestedFormats.join('", "')}"`);
-    const format = (_a6 = requestedFormats[0]) !== null && _a6 !== void 0 ? _a6 : EXT_TO_FORMAT[import_node_path57.default.extname(output2)];
+    const format = (_a6 = requestedFormats[0]) !== null && _a6 !== void 0 ? _a6 : EXT_TO_FORMAT[import_node_path56.default.extname(output2)];
     if (!format) {
       throw new Error(`Cannot specify format from output "${output2}" - please specify format option, e.g. --pdf`);
     }
-    exportOptionsList = resolveExportListArticles(session, files[0], [{ format, output: import_node_path57.default.join(import_node_path57.default.resolve("."), output2) }], projectPath, opts).map((exp) => {
+    exportOptionsList = resolveExportListArticles(session, files[0], [{ format, output: import_node_path56.default.join(import_node_path56.default.resolve("."), output2) }], projectPath, opts).map((exp) => {
       return { ...exp, $file: files[0], $project: projectPath };
     });
   } else if (files.length) {
@@ -313395,7 +313809,7 @@ async function build(session, files, opts) {
     exports: exportOptionsList
   };
   const exportLogList = exportOptionsList.map((exportOptions) => {
-    return `${import_node_path57.default.relative(".", exportOptions.$file)} -> ${exportOptions.output}`;
+    return `${import_node_path56.default.relative(".", exportOptions.$file)} -> ${exportOptions.output}`;
   });
   if (exportLogList.length === 0) {
     if (!(site || performSiteBuild)) {
@@ -313442,7 +313856,7 @@ exports:
 
 // ../myst-cli/dist/build/clean.js
 var import_node_fs39 = __toESM(require("fs"), 1);
-var import_node_path58 = __toESM(require("path"), 1);
+var import_node_path57 = __toESM(require("path"), 1);
 
 // ../../node_modules/inquirer/node_modules/chalk/source/vendor/ansi-styles/index.js
 var ANSI_BACKGROUND_OFFSET4 = 10;
@@ -314410,7 +314824,7 @@ var Prompt = class {
           (filteredValue) => {
             this.startSpinner(filteredValue, this.opt.validatingText);
             return validate5(filteredValue, self2.answers).then(
-              (isValid2) => ({ isValid: isValid2, value: filteredValue }),
+              (isValid3) => ({ isValid: isValid3, value: filteredValue }),
               (err) => ({ isValid: err, value: filteredValue })
             );
           },
@@ -314658,10 +315072,10 @@ var InputPrompt = class extends Prompt {
     this.screen.done();
     this.done(state.value);
   }
-  onError({ value = "", isValid: isValid2 }) {
+  onError({ value = "", isValid: isValid3 }) {
     this.rl.line += value;
     this.rl.cursor += value.length;
-    this.render(isValid2);
+    this.render(isValid3);
   }
   /**
    * When user press a key
@@ -315800,8 +316214,8 @@ function coerceOpts(opts) {
 function isSubpath(item, folder) {
   if (item === folder)
     return false;
-  const itemParts = item.split(import_node_path58.default.sep);
-  const folderParts = folder.split(import_node_path58.default.sep);
+  const itemParts = item.split(import_node_path57.default.sep);
+  const folderParts = folder.split(import_node_path57.default.sep);
   let subpath = true;
   folderParts.forEach((part, index4) => {
     if (itemParts[index4] !== part)
@@ -315842,7 +316256,7 @@ async function clean2(session, files, opts) {
       ...exportOptionsList.map((exp) => exp.$project)
     ];
     projectPaths.filter((projPath) => Boolean(projPath)).forEach((projPath) => {
-      buildFolders.push(import_node_path58.default.join(projPath, "_build"));
+      buildFolders.push(import_node_path57.default.join(projPath, "_build"));
     });
     buildFolders.push(session.buildPath());
   }
@@ -315850,19 +316264,19 @@ async function clean2(session, files, opts) {
   if (temp || logs || cache || exports2 || templates || execute || html7) {
     buildFolders.forEach((folder) => {
       if (temp)
-        pathsToDelete.push(import_node_path58.default.join(folder, "temp"));
+        pathsToDelete.push(import_node_path57.default.join(folder, "temp"));
       if (logs)
-        pathsToDelete.push(import_node_path58.default.join(folder, "logs"));
+        pathsToDelete.push(import_node_path57.default.join(folder, "logs"));
       if (cache)
-        pathsToDelete.push(import_node_path58.default.join(folder, "cache"));
+        pathsToDelete.push(import_node_path57.default.join(folder, "cache"));
       if (exports2)
-        pathsToDelete.push(import_node_path58.default.join(folder, "exports"));
+        pathsToDelete.push(import_node_path57.default.join(folder, "exports"));
       if (templates)
-        pathsToDelete.push(import_node_path58.default.join(folder, "templates"));
+        pathsToDelete.push(import_node_path57.default.join(folder, "templates"));
       if (html7)
-        pathsToDelete.push(import_node_path58.default.join(folder, "html"));
+        pathsToDelete.push(import_node_path57.default.join(folder, "html"));
       if (execute)
-        pathsToDelete.push(import_node_path58.default.join(folder, "execute"));
+        pathsToDelete.push(import_node_path57.default.join(folder, "execute"));
     });
   }
   if (site) {
@@ -315894,7 +316308,7 @@ async function clean2(session, files, opts) {
 
 // ../myst-cli/dist/build/init.js
 var import_node_fs41 = __toESM(require("fs"), 1);
-var import_node_path60 = __toESM(require("path"), 1);
+var import_node_path59 = __toESM(require("path"), 1);
 
 // ../../node_modules/uuid/dist/esm-node/rng.js
 var import_crypto2 = __toESM(require("crypto"));
@@ -315950,7 +316364,7 @@ var v4_default = v4;
 
 // ../myst-cli/dist/build/gh-actions/index.js
 var import_node_fs40 = __toESM(require("fs"), 1);
-var import_node_path59 = __toESM(require("path"), 1);
+var import_node_path58 = __toESM(require("path"), 1);
 
 // ../myst-cli/dist/build/utils/github.js
 async function getGithubUrl() {
@@ -316090,7 +316504,7 @@ var workflowQuestions = [
     validate(input3) {
       if (!input3.endsWith(".yml"))
         return "The GitHub Action name must end in `.yml`";
-      const exists2 = import_node_fs40.default.existsSync(import_node_path59.default.join(".github", "workflows", input3));
+      const exists2 = import_node_fs40.default.existsSync(import_node_path58.default.join(".github", "workflows", input3));
       if (exists2)
         return "The workflow file already exists, please choose another name.";
       return true;
@@ -316108,7 +316522,7 @@ async function githubPagesAction(session) {
     username: org,
     defaultBranch: prompt2.branch
   });
-  const filename = import_node_path59.default.join(".github", "workflows", prompt2.name);
+  const filename = import_node_path58.default.join(".github", "workflows", prompt2.name);
   writeFileToFolder(filename, action);
   const githubPagesUrl = githubUrl ? `https://${org}.github.io/${repo}` : void 0;
   session.log.info(`
@@ -316142,7 +316556,7 @@ async function githubCurvenoteAction(session) {
 `);
   const prompt2 = await inquirer_default.prompt(workflowQuestions);
   const action = createGithubCurvenoteAction({ defaultBranch: prompt2.branch });
-  const filename = import_node_path59.default.join(".github", "workflows", prompt2.name);
+  const filename = import_node_path58.default.join(".github", "workflows", prompt2.name);
   writeFileToFolder(filename, action);
   session.log.info(`
 \u{1F389} GitHub Action is configured:
@@ -316269,7 +316683,7 @@ async function init2(session, opts) {
       configData2 = `${VERSION_CONFIG}${createProjectConfig({ github })}${SITE_CONFIG}`;
       configDoc = "project and site";
     }
-    session.log.info(`\u{1F4BE} Writing new ${configDoc} config file: ${source_default.blue(import_node_path60.default.resolve(configFile))}`);
+    session.log.info(`\u{1F4BE} Writing new ${configDoc} config file: ${source_default.blue(import_node_path59.default.resolve(configFile))}`);
     import_node_fs41.default.writeFileSync(configFile, configData2);
   }
   if (writeTOC) {
@@ -316485,7 +316899,7 @@ ${error === null || error === void 0 ? void 0 : error.stack}
 }
 
 // ../myst-cli/dist/session/session.js
-var import_node_path61 = __toESM(require("path"), 1);
+var import_node_path60 = __toESM(require("path"), 1);
 
 // ../../node_modules/package-json/index.js
 var import_node_http5 = require("http");
@@ -323143,19 +323557,19 @@ var Session = class {
     const sitePath = selectors_exports.selectCurrentSitePath(state);
     const projectPath = selectors_exports.selectCurrentProjectPath(state);
     const root6 = (_a6 = sitePath !== null && sitePath !== void 0 ? sitePath : projectPath) !== null && _a6 !== void 0 ? _a6 : ".";
-    return import_node_path61.default.resolve(root6);
+    return import_node_path60.default.resolve(root6);
   }
   buildPath() {
-    return import_node_path61.default.join(this.sourcePath(), "_build");
+    return import_node_path60.default.join(this.sourcePath(), "_build");
   }
   sitePath() {
-    return import_node_path61.default.join(this.buildPath(), "site");
+    return import_node_path60.default.join(this.buildPath(), "site");
   }
   contentPath() {
-    return import_node_path61.default.join(this.sitePath(), "content");
+    return import_node_path60.default.join(this.sitePath(), "content");
   }
   publicPath() {
-    return import_node_path61.default.join(this.sitePath(), "public");
+    return import_node_path60.default.join(this.sitePath(), "public");
   }
   clone() {
     const cloneSession = new Session({ logger: this.log });
@@ -323808,7 +324222,7 @@ function makeStartCLI(program3) {
 
 // src/templates.ts
 var import_node_fs43 = __toESM(require("fs"), 1);
-var import_node_path62 = require("path");
+var import_node_path61 = require("path");
 var allTemplates = [TemplateKind.tex, TemplateKind.typst, TemplateKind.docx, TemplateKind.site];
 function getKindFromName(name3) {
   var _a6;
@@ -323865,7 +324279,7 @@ async function listTemplatesCLI(session, name3, opts) {
     if (kinds && (kinds == null ? void 0 : kinds.length) > 1) {
       throw new Error("Cannot lookup a template with more than one kind.");
     }
-    const isLocal = import_node_fs43.default.existsSync(name3) ? name3.endsWith(".yml") ? name3 : (0, import_node_path62.join)(name3, TEMPLATE_YML) : false;
+    const isLocal = import_node_fs43.default.existsSync(name3) ? name3.endsWith(".yml") ? name3 : (0, import_node_path61.join)(name3, TEMPLATE_YML) : false;
     const template = isLocal ? js_yaml_default.load(import_node_fs43.default.readFileSync(isLocal).toString()) : await fetchPublicTemplate(session, name3, kinds == null ? void 0 : kinds[0]);
     if (!template.id)
       template.id = name3;