myokit 1.33.9__py3-none-any.whl → 1.35.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- myokit/__init__.py +9 -36
- myokit/__main__.py +76 -142
- myokit/_aux.py +62 -16
- myokit/_bin/example.mmt +1 -2
- myokit/_bin/install-win/menu.json +7 -7
- myokit/_config.py +22 -31
- myokit/_datablock.py +30 -74
- myokit/_datalog.py +49 -72
- myokit/_err.py +25 -24
- myokit/_expressions.py +50 -68
- myokit/_io.py +15 -27
- myokit/_model_api.py +453 -249
- myokit/_myokit_version.py +1 -5
- myokit/_parsing.py +38 -44
- myokit/_progress.py +5 -8
- myokit/_protocol.py +99 -9
- myokit/_sim/__init__.py +7 -24
- myokit/_sim/cable.c +6 -8
- myokit/_sim/cable.py +6 -8
- myokit/_sim/cmodel.h +125 -70
- myokit/_sim/cmodel.py +12 -14
- myokit/_sim/compiler.py +1 -4
- myokit/_sim/cvodessim.c +196 -118
- myokit/_sim/cvodessim.py +130 -103
- myokit/_sim/differential.hpp +4 -4
- myokit/_sim/fiber_tissue.c +4 -8
- myokit/_sim/fiber_tissue.py +11 -13
- myokit/_sim/jacobian.cpp +2 -2
- myokit/_sim/jacobian.py +11 -8
- myokit/_sim/mcl.h +53 -55
- myokit/_sim/opencl.py +21 -27
- myokit/_sim/openclsim.c +3 -7
- myokit/_sim/openclsim.cl +3 -3
- myokit/_sim/openclsim.py +49 -40
- myokit/_sim/pacing.h +36 -16
- myokit/_sim/rhs.c +6 -13
- myokit/_sim/rhs.py +5 -14
- myokit/_sim/sundials.py +1 -4
- myokit/_system.py +10 -16
- myokit/_unit.py +4 -13
- myokit/float.py +0 -3
- myokit/formats/__init__.py +8 -10
- myokit/formats/ansic/__init__.py +0 -3
- myokit/formats/ansic/_ewriter.py +2 -4
- myokit/formats/ansic/_exporter.py +1 -4
- myokit/formats/ansic/template/cable.c +4 -4
- myokit/formats/ansic/template/euler.c +5 -5
- myokit/formats/ansic/template/sim.c +6 -6
- myokit/formats/axon/__init__.py +1 -3
- myokit/formats/axon/_abf.py +12 -17
- myokit/formats/axon/_atf.py +5 -6
- myokit/formats/axon/_importer.py +0 -3
- myokit/formats/cellml/__init__.py +0 -3
- myokit/formats/cellml/_ewriter.py +3 -6
- myokit/formats/cellml/_exporter.py +3 -6
- myokit/formats/cellml/_importer.py +1 -4
- myokit/formats/cellml/v1/__init__.py +0 -4
- myokit/formats/cellml/v1/_api.py +8 -11
- myokit/formats/cellml/v1/_parser.py +2 -5
- myokit/formats/cellml/v1/_writer.py +2 -11
- myokit/formats/cellml/v2/__init__.py +0 -3
- myokit/formats/cellml/v2/_api.py +8 -17
- myokit/formats/cellml/v2/_parser.py +2 -5
- myokit/formats/cellml/v2/_writer.py +1 -4
- myokit/formats/channelml/__init__.py +0 -3
- myokit/formats/channelml/_importer.py +11 -21
- myokit/formats/cpp/__init__.py +1 -3
- myokit/formats/cpp/_ewriter.py +0 -3
- myokit/formats/cuda/__init__.py +0 -3
- myokit/formats/cuda/_ewriter.py +2 -4
- myokit/formats/cuda/_exporter.py +0 -3
- myokit/formats/cuda/template/kernel.cu +8 -5
- myokit/formats/easyml/__init__.py +0 -3
- myokit/formats/easyml/_ewriter.py +9 -11
- myokit/formats/easyml/_exporter.py +2 -5
- myokit/formats/html/__init__.py +0 -3
- myokit/formats/html/_exporter.py +0 -3
- myokit/formats/html/_flatten.py +5 -21
- myokit/formats/latex/__init__.py +0 -3
- myokit/formats/latex/_ewriter.py +1 -4
- myokit/formats/latex/_exporter.py +4 -6
- myokit/formats/mathml/__init__.py +0 -3
- myokit/formats/mathml/_ewriter.py +2 -11
- myokit/formats/mathml/_parser.py +4 -6
- myokit/formats/matlab/__init__.py +0 -3
- myokit/formats/matlab/_ewriter.py +1 -4
- myokit/formats/matlab/_exporter.py +2 -5
- myokit/formats/matlab/template/main.m +3 -2
- myokit/formats/opencl/__init__.py +0 -3
- myokit/formats/opencl/_ewriter.py +2 -4
- myokit/formats/opencl/_exporter.py +2 -5
- myokit/formats/opencl/template/cable.c +10 -10
- myokit/formats/opencl/template/kernel.cl +1 -1
- myokit/formats/opencl/template/minilog.py +1 -1
- myokit/formats/python/__init__.py +0 -3
- myokit/formats/python/_ewriter.py +2 -5
- myokit/formats/python/_exporter.py +0 -3
- myokit/formats/python/template/sim.py +14 -14
- myokit/formats/sbml/__init__.py +0 -3
- myokit/formats/sbml/_api.py +50 -44
- myokit/formats/sbml/_importer.py +1 -4
- myokit/formats/sbml/_parser.py +2 -5
- myokit/formats/stan/__init__.py +0 -3
- myokit/formats/stan/_ewriter.py +2 -4
- myokit/formats/stan/_exporter.py +2 -5
- myokit/formats/stan/template/cell.stan +3 -3
- myokit/formats/sympy/__init__.py +0 -3
- myokit/formats/sympy/_ereader.py +1 -4
- myokit/formats/sympy/_ewriter.py +2 -5
- myokit/formats/wcp/__init__.py +0 -3
- myokit/formats/wcp/_wcp.py +2 -8
- myokit/formats/xml/__init__.py +0 -3
- myokit/formats/xml/_exporter.py +0 -3
- myokit/formats/xml/_split.py +0 -3
- myokit/gui/__init__.py +80 -246
- myokit/gui/datablock_viewer.py +103 -86
- myokit/gui/datalog_viewer.py +214 -66
- myokit/gui/explorer.py +15 -21
- myokit/gui/ide.py +171 -144
- myokit/gui/progress.py +9 -9
- myokit/gui/source.py +406 -375
- myokit/gui/vargrapher.py +2 -12
- myokit/lib/deps.py +12 -13
- myokit/lib/guess.py +3 -4
- myokit/lib/hh.py +20 -18
- myokit/lib/markov.py +21 -20
- myokit/lib/multi.py +1 -3
- myokit/lib/plots.py +20 -9
- myokit/pacing.py +0 -3
- myokit/pype.py +7 -18
- myokit/tests/__init__.py +3 -6
- myokit/tests/ansic_event_based_pacing.py +1 -4
- myokit/tests/ansic_fixed_form_pacing.py +3 -6
- myokit/tests/data/beeler-1977-model-compare-b.mmt +2 -2
- myokit/tests/data/clancy-1999-fitting.mmt +1 -0
- myokit/tests/test_aux.py +13 -28
- myokit/tests/test_cellml_v1_api.py +4 -19
- myokit/tests/test_cellml_v1_parser.py +0 -15
- myokit/tests/test_cellml_v1_writer.py +0 -9
- myokit/tests/test_cellml_v2_api.py +4 -19
- myokit/tests/test_cellml_v2_parser.py +0 -15
- myokit/tests/test_cellml_v2_writer.py +0 -9
- myokit/tests/test_cmodel.py +16 -22
- myokit/tests/test_compiler_detection.py +1 -11
- myokit/tests/test_component.py +108 -56
- myokit/tests/test_config.py +34 -67
- myokit/tests/test_datablock.py +1 -9
- myokit/tests/test_datalog.py +19 -24
- myokit/tests/test_dependency_checking.py +8 -23
- myokit/tests/test_expressions.py +0 -9
- myokit/tests/test_float.py +1 -5
- myokit/tests/test_formats.py +0 -9
- myokit/tests/test_formats_axon.py +1 -9
- myokit/tests/test_formats_cellml.py +0 -15
- myokit/tests/test_formats_channelml.py +0 -15
- myokit/tests/test_formats_easyml.py +0 -14
- myokit/tests/test_formats_exporters.py +1 -16
- myokit/tests/test_formats_expression_writers.py +1 -17
- myokit/tests/test_formats_html.py +0 -3
- myokit/tests/test_formats_importers.py +1 -16
- myokit/tests/test_formats_mathml_content.py +0 -9
- myokit/tests/test_formats_mathml_presentation.py +0 -9
- myokit/tests/test_formats_opencl.py +0 -10
- myokit/tests/test_formats_sbml.py +0 -15
- myokit/tests/test_formats_sympy.py +0 -9
- myokit/tests/test_formats_wcp.py +1 -3
- myokit/tests/test_io.py +27 -27
- myokit/tests/test_jacobian_calculator.py +6 -14
- myokit/tests/test_jacobian_tracer.py +0 -9
- myokit/tests/test_lib_deps.py +0 -9
- myokit/tests/test_lib_guess.py +0 -9
- myokit/tests/test_lib_hh.py +18 -12
- myokit/tests/test_lib_markov.py +21 -13
- myokit/tests/test_lib_multi.py +0 -9
- myokit/tests/test_lib_plots.py +13 -8
- myokit/tests/test_meta.py +0 -3
- myokit/tests/test_model.py +390 -96
- myokit/tests/test_model_building.py +44 -96
- myokit/tests/test_opencl_info.py +5 -14
- myokit/tests/test_pacing_factory.py +0 -3
- myokit/tests/test_pacing_system_c.py +1 -23
- myokit/tests/test_pacing_system_py.py +0 -9
- myokit/tests/test_parsing.py +139 -56
- myokit/tests/test_progress_reporters.py +0 -3
- myokit/tests/test_protocol.py +0 -9
- myokit/tests/test_protocol_floating_point.py +1 -10
- myokit/tests/test_protocol_time_series.py +82 -0
- myokit/tests/test_pype.py +0 -9
- myokit/tests/test_quantity.py +0 -9
- myokit/tests/test_rhs_benchmarker.py +1 -9
- myokit/tests/test_sbml_api.py +27 -42
- myokit/tests/test_sbml_parser.py +4 -19
- myokit/tests/test_simulation_1d.py +45 -25
- myokit/tests/test_simulation_cvodes.py +321 -55
- myokit/tests/test_simulation_cvodes_from_disk.py +0 -3
- myokit/tests/test_simulation_fiber_tissue.py +39 -12
- myokit/tests/test_simulation_log_interval.py +1 -431
- myokit/tests/test_simulation_opencl.py +69 -48
- myokit/tests/test_simulation_opencl_log_interval.py +1 -3
- myokit/tests/test_simulation_opencl_vs_cvode.py +1 -10
- myokit/tests/test_simulation_opencl_vs_sim1d.py +1 -10
- myokit/tests/test_system_info.py +1 -11
- myokit/tests/test_tools.py +0 -9
- myokit/tests/test_unit.py +1 -10
- myokit/tests/test_user_functions.py +0 -10
- myokit/tests/test_variable.py +231 -27
- myokit/tools.py +5 -21
- myokit/units.py +5 -3
- {myokit-1.33.9.dist-info → myokit-1.35.0.dist-info}/METADATA +12 -15
- myokit-1.35.0.dist-info/RECORD +391 -0
- {myokit-1.33.9.dist-info → myokit-1.35.0.dist-info}/WHEEL +1 -1
- {myokit-1.33.9.dist-info → myokit-1.35.0.dist-info}/entry_points.txt +0 -1
- myokit/_exec_new.py +0 -15
- myokit/_exec_old.py +0 -15
- myokit/_sim/cvodesim.c +0 -1551
- myokit/_sim/cvodesim.py +0 -674
- myokit/_sim/icsim.cpp +0 -563
- myokit/_sim/icsim.py +0 -363
- myokit/_sim/psim.cpp +0 -656
- myokit/_sim/psim.py +0 -493
- myokit/lib/common.py +0 -1094
- myokit/tests/test_lib_common.py +0 -130
- myokit/tests/test_simulation_cvode.py +0 -612
- myokit/tests/test_simulation_ic.py +0 -108
- myokit/tests/test_simulation_p.py +0 -223
- myokit-1.33.9.dist-info/RECORD +0 -403
- /myokit/formats/opencl/template/{test → test.sh} +0 -0
- {myokit-1.33.9.dist-info → myokit-1.35.0.dist-info}/LICENSE.txt +0 -0
- {myokit-1.33.9.dist-info → myokit-1.35.0.dist-info}/top_level.txt +0 -0
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Summary: A simple interface to cardiac cellular electrophysiology
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Home-page: http://myokit.org
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Author: Michael Clerx
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If you use Myokit in your research, please cite it using the information in our [CITATION file](https://github.com/MichaelClerx/myokit/blob/main/CITATION).
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I like to [keep track of who's using Myokit](http://myokit.org/publications/) (for my CV!). If you are using Myokit for teaching, I'd love to hear about it. You can drop me a line at michael[at]myokit.org.
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