mxlpy 0.21.0__py3-none-any.whl → 0.23.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (39) hide show
  1. mxlpy/__init__.py +15 -2
  2. mxlpy/carousel.py +6 -4
  3. mxlpy/compare.py +4 -8
  4. mxlpy/experimental/diff.py +1 -1
  5. mxlpy/fit.py +195 -99
  6. mxlpy/identify.py +14 -9
  7. mxlpy/integrators/__init__.py +4 -0
  8. mxlpy/integrators/int_assimulo.py +3 -3
  9. mxlpy/integrators/int_diffrax.py +119 -0
  10. mxlpy/integrators/int_scipy.py +15 -6
  11. mxlpy/label_map.py +6 -7
  12. mxlpy/linear_label_map.py +3 -1
  13. mxlpy/mc.py +25 -22
  14. mxlpy/mca.py +10 -6
  15. mxlpy/meta/__init__.py +5 -3
  16. mxlpy/meta/codegen_latex.py +44 -30
  17. mxlpy/meta/codegen_model.py +175 -0
  18. mxlpy/meta/codegen_mxlpy.py +254 -0
  19. mxlpy/meta/source_tools.py +506 -221
  20. mxlpy/meta/sympy_tools.py +117 -0
  21. mxlpy/model.py +758 -257
  22. mxlpy/plot.py +16 -14
  23. mxlpy/report.py +153 -90
  24. mxlpy/sbml/_export.py +22 -11
  25. mxlpy/sbml/_import.py +68 -547
  26. mxlpy/scan.py +39 -243
  27. mxlpy/simulator.py +109 -283
  28. mxlpy/symbolic/symbolic_model.py +29 -17
  29. mxlpy/types.py +694 -97
  30. mxlpy/units.py +133 -0
  31. {mxlpy-0.21.0.dist-info → mxlpy-0.23.0.dist-info}/METADATA +4 -1
  32. mxlpy-0.23.0.dist-info/RECORD +57 -0
  33. mxlpy/meta/codegen_modebase.py +0 -112
  34. mxlpy/meta/codegen_py.py +0 -115
  35. mxlpy/sbml/_mathml.py +0 -692
  36. mxlpy/sbml/_unit_conversion.py +0 -74
  37. mxlpy-0.21.0.dist-info/RECORD +0 -56
  38. {mxlpy-0.21.0.dist-info → mxlpy-0.23.0.dist-info}/WHEEL +0 -0
  39. {mxlpy-0.21.0.dist-info → mxlpy-0.23.0.dist-info}/licenses/LICENSE +0 -0
mxlpy/sbml/_unit_conversion.py DELETED
@@ -1,74 +0,0 @@
1
- from __future__ import annotations
2
-
3
- __all__ = ["get_ast_types", "get_operator_mappings", "get_unit_conversion"]
4
-
5
-
6
- import libsbml
7
-
8
- unit_conversion = {
9
- "UNIT_KIND_AMPERE": "AMPERE",
10
- "UNIT_KIND_AVOGADRO": "AVOGADRO",
11
- "UNIT_KIND_BECQUEREL": "BECQUEREL",
12
- "UNIT_KIND_CANDELA": "CANDELA",
13
- "UNIT_KIND_CELSIUS": "CELSIUS",
14
- "UNIT_KIND_COULOMB": "COULOMB",
15
- "UNIT_KIND_DIMENSIONLESS": "DIMENSIONLESS",
16
- "UNIT_KIND_FARAD": "FARAD",
17
- "UNIT_KIND_GRAM": "GRAM",
18
- "UNIT_KIND_GRAY": "GRAY",
19
- "UNIT_KIND_HENRY": "HENRY",
20
- "UNIT_KIND_HERTZ": "HERTZ",
21
- "UNIT_KIND_ITEM": "ITEM",
22
- "UNIT_KIND_JOULE": "JOULE",
23
- "UNIT_KIND_KATAL": "KATAL",
24
- "UNIT_KIND_KELVIN": "KELVIN",
25
- "UNIT_KIND_KILOGRAM": "KILOGRAM",
26
- "UNIT_KIND_LITER": "LITER",
27
- "UNIT_KIND_LITRE": "LITER",
28
- "UNIT_KIND_LUMEN": "LUMEN",
29
- "UNIT_KIND_LUX": "LUX",
30
- "UNIT_KIND_METER": "METER",
31
- "UNIT_KIND_METRE": "METRE",
32
- "UNIT_KIND_MOLE": "MOLE",
33
- "UNIT_KIND_NEWTON": "NEWTON",
34
- "UNIT_KIND_OHM": "OHM",
35
- "UNIT_KIND_PASCAL": "PASCAL",
36
- "UNIT_KIND_RADIAN": "RADIAN",
37
- "UNIT_KIND_SECOND": "SECOND",
38
- "UNIT_KIND_SIEMENS": "SIEMENS",
39
- "UNIT_KIND_SIEVERT": "SIEVERT",
40
- "UNIT_KIND_STERADIAN": "STERADIAN",
41
- "UNIT_KIND_TESLA": "TESLA",
42
- "UNIT_KIND_VOLT": "VOLT",
43
- "UNIT_KIND_WATT": "WATT",
44
- "UNIT_KIND_WEBER": "WEBER",
45
- "UNIT_KIND_INVALID": "INVALID",
46
- }
47
-
48
-
49
- def get_unit_conversion() -> dict[str, str]:
50
- return {getattr(libsbml, k): v.lower() for k, v in unit_conversion.items()}
51
-
52
-
53
- ast_types = dict(
54
- sorted(
55
- {getattr(libsbml, i): i for i in dir(libsbml) if i.startswith("AST_")}.items()
56
- )
57
- )
58
-
59
-
60
- def get_ast_types() -> dict[str, str]:
61
- return ast_types
62
-
63
-
64
- operator_mappings = {
65
- "AST_TIMES": "*",
66
- "AST_PLUS": "+",
67
- "AST_MINUS": "-",
68
- "AST_DIVIDE": "/",
69
- "AST_POWER": "**",
70
- }
71
-
72
-
73
- def get_operator_mappings() -> dict[str, str]:
74
- return operator_mappings
mxlpy-0.21.0.dist-info/RECORD DELETED
@@ -1,56 +0,0 @@
1
- mxlpy/__init__.py,sha256=4pbDeyLhQjfL76h2oXdodARzKkrkX5wESV7kEjwC3K8,4399
2
- mxlpy/carousel.py,sha256=o72YKzfPCDhT5oHhow4oNvIShG-i3-Z0UMEQLt2iE5A,4699
3
- mxlpy/compare.py,sha256=6iIl6yKXP9guSVLgqqnaqILP_BF_oqyx7DTGbdpwAjM,7800
4
- mxlpy/distributions.py,sha256=ce6RTqn19YzMMec-u09fSIUA8A92M6rehCuHuXWcX7A,8734
5
- mxlpy/fit.py,sha256=vJGd_kl-MqyI7db96uM9STeBnvPVu1VGLCiGuH8mEKc,19009
6
- mxlpy/fns.py,sha256=NLxYwa3ylS7SkISBjw_TgQSKEm7WnkZF9wPigX_ZCAM,13915
7
- mxlpy/identify.py,sha256=yU6ccd0yDJhtyo5gkemMuecZALzjR1KzT0vKPmlL4kg,2107
8
- mxlpy/label_map.py,sha256=Zla9tey-7_POTE57XNEuCSeTqdAbMWZdj_j_OwokngY,17823
9
- mxlpy/linear_label_map.py,sha256=5FyD0MMdSGsC3eKeBnpd1LBHyVBqIDWCDjgR8_q6XZo,10289
10
- mxlpy/mc.py,sha256=bt2DrMaovWO_LM3PfkVr0cvK6k_ZSjLRnudasgC5SRM,17132
11
- mxlpy/mca.py,sha256=B1bRb_EHim3uJ90KJkTZ5HXrVOBjrctcRCsQG4PXU-U,9351
12
- mxlpy/model.py,sha256=14gncyYft39rwoiJPb5AynL3whXnZrJY3N7SLExH0Qk,62056
13
- mxlpy/parallel.py,sha256=yLQLw5O4vnPVp_Zmtw1UhPWtB3483foimxQB-TwFKPg,5016
14
- mxlpy/parameterise.py,sha256=IgbvfEnkmaqVq_5GgFjHqApGUN9CJrsVD3Fr7pg9iFA,758
15
- mxlpy/paths.py,sha256=TK2wO4N9lG-UV1JGfeB64q48JVDbwqIUj63rl55MKuQ,1022
16
- mxlpy/plot.py,sha256=PA7tAmy2XXACxBLtdnfpxKUFRzi-lnCQjr7gw_nzxKU,32544
17
- mxlpy/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
18
- mxlpy/report.py,sha256=6V_kH5usFtar2lUGLjG5k7WIJjUi1TD5qIO7V_6V3Gc,8773
19
- mxlpy/scan.py,sha256=_MwwTiL-IQPlUU9e2L1Wc-V95sElcaPw-DkxoXYanzc,19421
20
- mxlpy/simulator.py,sha256=tdxTUbsWo3SdYi7a1lsMah9D_Dz_FqnMjTfK-3oT2Gk,21091
21
- mxlpy/types.py,sha256=FXBkwHgQ3v_k4ER49hDqyFMIA6i1BQf8isPma97LJdg,12605
22
- mxlpy/experimental/__init__.py,sha256=kZTE-92OErpHzNRqmgSQYH4CGXrogGJ5EL35XGZQ81M,206
23
- mxlpy/experimental/diff.py,sha256=MoM15rbMAHa7p9Zva8NxIc7K585kHJYKFaD1LnN5e10,9088
24
- mxlpy/integrators/__init__.py,sha256=OLdcNCDIOiD1Z2LO143YtD47cMadNJt0app41nLAx5o,456
25
- mxlpy/integrators/int_assimulo.py,sha256=8gLR1D4zJ-TnJ9DTkfkqA2uVE0H2w_npZhZ8RoWZOX8,5013
26
- mxlpy/integrators/int_scipy.py,sha256=MEwhTNhMMVQE2UFWxv5fifN6TKVjRsyDmyibuuNNiHI,4649
27
- mxlpy/meta/__init__.py,sha256=Z3LnN3a9qDAJTukHZs_nF_G6DrjKXOqBvOb47rSsAsM,314
28
- mxlpy/meta/codegen_latex.py,sha256=ocdn_mrjPXllYBwImOBQcFzjFR6LONnBs3fhRIA0yzs,22875
29
- mxlpy/meta/codegen_modebase.py,sha256=ziUuwod1F10ak7WTj5gcuVL7MLtK65kUhqKGCxgn3mY,3131
30
- mxlpy/meta/codegen_py.py,sha256=bpwXrGUaf8lO81VVcIh0cbtf4cd84CYDZrL3ngf1FHo,3587
31
- mxlpy/meta/source_tools.py,sha256=8kZD0_FnO2t8MTG9FvEFOhhU52uXKNpQJW6xDOGWGck,13540
32
- mxlpy/nn/__init__.py,sha256=Qjr-ERsY2lbD75sFBOhCUwEasQDSJKcpBn_kReLZ6oA,633
33
- mxlpy/nn/_keras.py,sha256=-5zjHRu8OjSiZeuBSIZFyB63uBsNNH5o9y4kBcPnhx8,2263
34
- mxlpy/nn/_torch.py,sha256=GUJmLU282VU4O-fs3Sz90SEaAnfuXN2MPlBr_tHmvn4,5775
35
- mxlpy/npe/__init__.py,sha256=hBHCUD2JYDBBGS2kTY8mTCfWB3u1R7m5l--wUupZt6o,1270
36
- mxlpy/npe/_keras.py,sha256=ytvXMPK9KUCGOzTQm08_SgafiMb-MOIUdZQV7JjAO40,9721
37
- mxlpy/npe/_torch.py,sha256=v3joh6lFJJxvYJj--wzmKXL9UMTaIN3h6hPNq0uX9NU,11250
38
- mxlpy/sbml/__init__.py,sha256=Mt97CddpLi3wIrA1b_5cagLmDdNxAVF_S7QV57Pzw8s,226
39
- mxlpy/sbml/_data.py,sha256=yYli7ZQ1_pnH9kt5EmcuHM0moQoa43rrFVdrseXlG0o,1136
40
- mxlpy/sbml/_export.py,sha256=4tU3SVxfEvl0E1urZWHyphkiAeH5HeRO1cODvvrczAQ,20342
41
- mxlpy/sbml/_import.py,sha256=5odQBdpD93mQJp2bVIabmPo6NK60nxqrdSVB8fEsF_A,22099
42
- mxlpy/sbml/_mathml.py,sha256=oaU9q5yb9jvDGxDJrqOkbOiurCB1Vv_P99oUwJ7v1VE,24437
43
- mxlpy/sbml/_name_conversion.py,sha256=93muW47M7qJoE227HKHmThWpPeWsXDN9eM8cRH2pqPs,1340
44
- mxlpy/sbml/_unit_conversion.py,sha256=dW_I6_Ou09ccwnp6LIdrPriIQnQUK5lJcjzM2Fawm6U,1927
45
- mxlpy/surrogates/__init__.py,sha256=cz9qr0ToYSutIK45IvKrMe1mPP7Lj0I_V0HYGixfpZU,916
46
- mxlpy/surrogates/_keras.py,sha256=r2pR3iTJOaMqtATbsCm5CF94TYG9b-9cKljc8kMOplQ,3852
47
- mxlpy/surrogates/_poly.py,sha256=z2g3JTdVyQJ8dIiXP4BOun_yMZOrlYpPNvQ0wmFYDTk,3672
48
- mxlpy/surrogates/_qss.py,sha256=9w-hPPhdcwybkyaSX0sIfYfvcKu1U5j4HHj4SlgZcYQ,723
49
- mxlpy/surrogates/_torch.py,sha256=gU0secuRBYgewhNqZmSo6_Xf804dSzwWwIYmdKA7y60,6389
50
- mxlpy/symbolic/__init__.py,sha256=_vM5YM5I6OH0QDbFt9uGYKO8Z5Vly0wbGuvUScVrPRU,258
51
- mxlpy/symbolic/strikepy.py,sha256=tzo3uvPpXLDex09hWTuitVzuTNwbgl7jWGjD8g6a8iI,20033
52
- mxlpy/symbolic/symbolic_model.py,sha256=JFzcIdyfJihvKjef748DMXU6WI8nHjgjIk5BwUuB4HQ,2543
53
- mxlpy-0.21.0.dist-info/METADATA,sha256=ZKxvZTNcrNCaadkRmKSU_6bQlSsJdTtuz_idNVEVbVs,4601
54
- mxlpy-0.21.0.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
55
- mxlpy-0.21.0.dist-info/licenses/LICENSE,sha256=lHX9Eu70g3Iv1aOxXTWNHa3vq9vaVYSPQx4jOLYmDpw,1096
56
- mxlpy-0.21.0.dist-info/RECORD,,
{mxlpy-0.21.0.dist-info → mxlpy-0.23.0.dist-info}/WHEEL RENAMED
File without changes