mxcubecore 1.393.0__py3-none-any.whl → 1.394.0__py3-none-any.whl

mxcubecore/HardwareObjects/ESRF/ESRFSC3.py

@@ -1,7 +1,6 @@
 """ESRF SC3 Sample Changer Hardware Object"""
 
 import functools
-import logging
 
 import SC3
 
@@ -40,7 +39,7 @@ class ESRFSC3(SC3.SC3):
         try:
             self.operationalFlagsChanged(chan)
         except Exception:
-            logging.getLogger("HWR").exception(
+            self.log.exception(
                 "%s: error getting SC vs MD operational flags" % self.name()
             )
 
@@ -53,7 +52,7 @@ class ESRFSC3(SC3.SC3):
 
     def __getSample(self, sample_id, sample_location):
         if sample_id and sample_location:
-            logging.getLogger("HWR").debug(
+            self.log.debug(
                 "%s: both sample barcode and location provided, discarding barcode...",
                 self.name(),
             )
@@ -103,10 +102,10 @@ class ESRFSC3(SC3.SC3):
                     )
 
                 if loaded:
-                    logging.getLogger("HWR").debug("%s: sample is loaded", self.name())
+                    self.log.debug("%s: sample is loaded", self.name())
 
                     if self.prepareCentringAfterLoad and prepareCentring:
-                        logging.getLogger("HWR").debug(
+                        self.log.debug(
                             "%s: preparing minidiff for sample centring", self.name()
                         )
                         self.emit("stateChanged", SC3.SampleChangerState.Moving)
@@ -125,7 +124,7 @@ class ESRFSC3(SC3.SC3):
         pass
 
     def __load_sample(self, holderLength, sample_id, sample_location):
-        logging.getLogger("HWR").debug("%s: in load_sample", self.name())
+        self.log.debug("%s: in load_sample", self.name())
 
         sample = self.__getSample(sample_id, sample_location)
 
@@ -134,7 +133,7 @@ class ESRFSC3(SC3.SC3):
 
         if not holderLength:
             holderLength = 22
-            logging.getLogger("HWR").debug(
+            self.log.debug(
                 "%s: loading sample: using default holder length (%d mm)",
                 self.name(),
                 holderLength,
@@ -185,9 +184,7 @@ class ESRFSC3(SC3.SC3):
                     )
 
                 if unloaded:
-                    logging.getLogger("HWR").debug(
-                        "%s: sample has been unloaded", self.name()
-                    )
+                    self.log.debug("%s: sample has been unloaded", self.name())
 
                     self.emit("statusChanged", "Ready")
 
@@ -199,7 +196,7 @@ class ESRFSC3(SC3.SC3):
 
         if not holderLength:
             holderLength = 22
-            logging.getLogger("HWR").debug(
+            self.log.debug(
                 "%s: unloading sample: using default holder length (%d mm)",
                 self.name(),
                 holderLength,
@@ -236,9 +233,7 @@ class ESRFSC3(SC3.SC3):
         try:
             val = int(val)
         except Exception:
-            logging.getLogger("HWR").exception(
-                "%s: error reading operational flags" % self.name()
-            )
+            self.log.exception("%s: error reading operational flags" % self.name())
             return
 
         old_sc_can_load = self.lastOperationalFlags & ESRFSC3.FLAG_SC_CAN_LOAD
@@ -274,9 +269,7 @@ class ESRFSC3(SC3.SC3):
         try:
             self.unlockMinidiffMotors()
         except Exception:
-            logging.getLogger("HWR").exception(
-                "%s: error unlocking minidiff motors" % self.name()
-            )
+            self.log.exception("%s: error unlocking minidiff motors" % self.name())
             return False
         return True
 
@@ -285,7 +278,7 @@ class ESRFSC3(SC3.SC3):
         try:
             r=self._moveToLoadingPosition()
         except:
-            logging.getLogger("HWR").exception("%s: error moving sample changer to loading position" % self.name())
+            self.log.exception("%s: error moving sample changer to loading position" % self.name())
             return False
         return True
     """

mxcubecore/HardwareObjects/ESRF/ID29HutchTrigger.py

@@ -26,9 +26,7 @@ class ID29HutchTrigger(BaseHardwareObjects.HardwareObject):
             self.device = PyTango.gevent.DeviceProxy(self.get_property("tangoname"))
         except PyTango.DevFailed as traceback:
             last_error = traceback[-1]
-            logging.getLogger("HWR").error(
-                "%s: %s", str(self.name()), last_error["desc"]
-            )
+            self.log.error("%s: %s", str(self.name()), last_error["desc"])
             self.device = None
 
         self.pollingTask = None
@@ -43,7 +41,7 @@ class ID29HutchTrigger(BaseHardwareObjects.HardwareObject):
         except Exception:
             logging.getLogger().error("%s: cannot find PSS number", self.name())
 
-            logging.getLogger("HWR").exception("")
+            self.log.exception("")
             return
 
         if self.device is not None:

mxcubecore/HardwareObjects/ESRF/MD2MultiCollect.py

@@ -22,7 +22,7 @@ class MD2MultiCollect(ESRFMultiCollect):
             comment = HWR.beamline.sample_changer.get_crystal_id()
             data_collect_parameters["comment"] = comment
         except Exception:
-            logging.getLogger("HWR").exception("")
+            self.log.exception("")
 
     @task
     def get_beam_size(self):
@@ -67,7 +67,7 @@ class MD2MultiCollect(ESRFMultiCollect):
         try:
             diffr.open_detector_cover()
         except Exception:
-            logging.getLogger("HWR").exception("Could not open detector cover")
+            self.log.exception("Could not open detector cover")
         """
         try:
             detcover = self.get_object_by_role("controller").detcover
@@ -75,7 +75,7 @@ class MD2MultiCollect(ESRFMultiCollect):
             if detcover.state == "IN":
                 detcover.set_out(10)
         except:
-            logging.getLogger("HWR").exception("Could not open detector cover")
+            self.log.exception("Could not open detector cover")
         """
 
         # send again the command as MD2 software only handles one
@@ -114,7 +114,7 @@ class MD2MultiCollect(ESRFMultiCollect):
 
             if sequence_trigger:
                 msg = "Using LIMA sequnce trigger mode for Eiger"
-                logging.getLogger("HWR").info(msg)
+                self.log.info(msg)
                 mesh_total_nb_frames = self.mesh_num_lines
             else:
                 mesh_total_nb_frames = self.mesh_total_nb_frames

mxcubecore/HardwareObjects/ESRF/SSXICATLIMS.py

@@ -1,5 +1,4 @@
 import json
-import logging
 import pathlib
 
 from mxcubecore import HardwareRepository as HWR
@@ -18,7 +17,7 @@ class SSXICATLIMS(ICATLIMS):
         pass
 
     def finalize_data_collection(self, parameters):
-        logging.getLogger("HWR").info("Storing data to ICAT")
+        self.log.info("Storing data to ICAT")
         collection_parameters = parameters["collection_parameters"]
         beamline_parameters = parameters["beamline_parameters"]
         data_path = parameters["data_path"]
@@ -32,10 +31,14 @@ class SSXICATLIMS(ICATLIMS):
                 "MX_beamSizeAtSampleY": beamline_parameters.beam_size_y,
                 "MX_detectorDistance": beamline_parameters.detector_distance,
                 "MX_directory": data_path,
-                "MX_exposureTime": collection_parameters.user_collection_parameters.exp_time,
+                "MX_exposureTime": (
+                    collection_parameters.user_collection_parameters.exp_time
+                ),
                 "MX_flux": extra_lims_values.flux_start,
                 "MX_fluxEnd": extra_lims_values.flux_end,
-                "MX_numberOfImages": collection_parameters.collection_parameters.num_images,
+                "MX_numberOfImages": (
+                    collection_parameters.collection_parameters.num_images
+                ),
                 "MX_resolution": beamline_parameters.resolution,
                 "MX_transmission": beamline_parameters.transmission,
                 "MX_xBeam": beamline_parameters.beam_x,
@@ -63,7 +66,7 @@ class SSXICATLIMS(ICATLIMS):
             icat_metadata_path = pathlib.Path(data_path) / "metadata.json"
             with open(icat_metadata_path, "w") as f:
                 f.write(json.dumps(data, indent=4))
-                logging.getLogger("HWR").info(f"Wrote {icat_metadata_path}")
+                self.log.info(f"Wrote {icat_metadata_path}")
 
         except Exception as e:
-            logging.getLogger("HWR").exception("Failed uploading to ICAT (%s)", e)
+            self.log.exception("Failed uploading to ICAT (%s)", e)

mxcubecore/HardwareObjects/EdnaWorkflow.py

@@ -97,12 +97,12 @@ class EdnaWorkflow(HardwareObject):
         return self.command_failed
 
     def set_command_failed(self, *args):
-        logging.getLogger("HWR").error("Workflow '%s' Tango command failed!", args[1])
+        self.log.error("Workflow '%s' Tango command failed!", args[1])
         self.command_failed = True
 
     def state_changed(self, new_value):
         new_value = str(new_value)
-        logging.getLogger("HWR").debug(f"{self.name}: state changed to {new_value}")
+        self.log.debug(f"{self.name}: state changed to {new_value}")
         self.emit("stateChanged", (new_value,))
 
     def workflow_end(self):
@@ -155,7 +155,7 @@ class EdnaWorkflow(HardwareObject):
 
     def abort(self):
         self.generateNewToken()
-        logging.getLogger("HWR").info("Aborting current workflow")
+        self.log.info("Aborting current workflow")
         # If necessary unblock dialog
         if not self.gevent_event.is_set():
             self.gevent_event.set()
@@ -164,11 +164,11 @@ class EdnaWorkflow(HardwareObject):
             abort_URL = (
                 f"http://{self.bes_host}:{self.bes_port}/ABORT/{self.bes_workflow_id}"
             )
-            logging.getLogger("HWR").info("BES abort web service URL: %r", abort_URL)
+            self.log.info("BES abort web service URL: %r", abort_URL)
             response = requests.get(abort_URL)
             if response.status_code == 200:
                 workflow_status = response.text
-                logging.getLogger("HWR").info(
+                self.log.info(
                     "BES workflow id %s: %s", self.bes_workflow_id, workflow_status
                 )
         self.state.value = "ON"
@@ -221,7 +221,7 @@ class EdnaWorkflow(HardwareObject):
 
         xml_rpc_server = HWR.beamline.xml_rpc_server
         if xml_rpc_server is None:
-            logging.getLogger("HWR").warning("No XMLRPCServer configured")
+            self.log.warning("No XMLRPCServer configured")
             return
 
         logging.info(
@@ -256,15 +256,13 @@ class EdnaWorkflow(HardwareObject):
         }
 
         start_URL = f"http://{self.bes_host}:{self.bes_port}/RUN/{self.workflow_name}"
-        logging.getLogger("HWR").info("BES start URL: %r", start_URL)
+        self.log.info("BES start URL: %r", start_URL)
         response = requests.post(start_URL, json=self.dict_parameters)
         if response.status_code == 200:
             self.state.value = "RUNNING"
             request_id = response.text
-            logging.getLogger("HWR").info(
-                "Workflow started, BES request id: %r", request_id
-            )
+            self.log.info("Workflow started, BES request id: %r", request_id)
             self.bes_workflow_id = request_id
         else:
-            logging.getLogger("HWR").error("Workflow didn't start!")
+            self.log.error("Workflow didn't start!")
             self.state.value = "ON"

mxcubecore/HardwareObjects/Energy.py

@@ -36,22 +36,22 @@ class Energy(HardwareObject):
         try:
             self.energy_motor = self.get_object_by_role("energy")
         except KeyError:
-            logging.getLogger("HWR").warning("Energy: error initializing energy motor")
+            self.log.warning("Energy: error initializing energy motor")
 
         try:
             self.default_en = self.get_property("default_energy")
         except KeyError:
-            logging.getLogger("HWR").warning("Energy: no default energy")
+            self.log.warning("Energy: no default energy")
 
         try:
             self.tunable = self.get_property("tunable_energy")
         except KeyError:
-            logging.getLogger("HWR").warning("Energy: will set to fixed energy")
+            self.log.warning("Energy: will set to fixed energy")
 
         try:
             self.ctrl = self.get_object_by_role("controller")
         except KeyError:
-            logging.getLogger("HWR").info("No controller used")
+            self.log.info("No controller used")
 
         if self.energy_motor is not None:
             self.energy_motor.connect("valueChanged", self.energyPositionChanged)
@@ -65,9 +65,7 @@ class Energy(HardwareObject):
             try:
                 return self.energy_motor.get_value()
             except Exception:
-                logging.getLogger("HWR").exception(
-                    "EnergyHO: could not read current energy"
-                )
+                self.log.exception("EnergyHO: could not read current energy")
                 return None
         return self.default_en
 
@@ -78,7 +76,7 @@ class Energy(HardwareObject):
         return None
 
     def get_limits(self):
-        logging.getLogger("HWR").debug("Get energy limits")
+        self.log.debug("Get energy limits")
         if not self.tunable:
             energy = self.get_value()
             return (energy, energy)
@@ -88,14 +86,12 @@ class Energy(HardwareObject):
                 self.en_lims = self.energy_motor.get_limits()
                 return self.en_lims
             except Exception:
-                logging.getLogger("HWR").exception(
-                    "EnergyHO: could not read energy motor limits"
-                )
+                self.log.exception("EnergyHO: could not read energy motor limits")
                 return None
         return None
 
     def get_wavelength_limits(self):
-        logging.getLogger("HWR").debug("Get wavelength limits")
+        self.log.debug("Get wavelength limits")
         if not self.tunable:
             return None
         self.en_lims = self.get_limits()
@@ -154,16 +150,16 @@ class Energy(HardwareObject):
         self.emit("moveEnergyFinished", ())
 
     def checkLimits(self, value):
-        logging.getLogger("HWR").debug("Checking the move limits")
+        self.log.debug("Checking the move limits")
         if self.get_limits():
             if value >= self.en_lims[0] and value <= self.en_lims[1]:
-                logging.getLogger("HWR").info("Limits ok")
+                self.log.info("Limits ok")
                 return True
             logging.getLogger("user_level_log").info("Requested value is out of limits")
         return False
 
     # def start_move_wavelength(self, value, wait=True):
-    #     logging.getLogger("HWR").info("Moving wavelength to (%s)" % value)
+    #     self.log.info("Moving wavelength to (%s)" % value)
     #     return self.startMoveEnergy(12.3984 / value, wait)
 
     def cancelMoveEnergy(self):

mxcubecore/HardwareObjects/ExporterMotor.py

@@ -35,7 +35,6 @@ differ from the default ones.
   <use_global_state>False</use_global_state>
 """
 
-import logging
 import math
 import sys
 
@@ -194,7 +193,7 @@ class ExporterMotor(AbstractMotor):
         _val = self.motor_position_chan.get_value()
 
         if _val is None or math.isnan(_val):
-            logging.getLogger("HWR").debug("Value of %s is NaN" % self.actuator_name)
+            self.log.debug("Value of %s is NaN" % self.actuator_name)
             _val = self._nominal_value
 
         self._nominal_value = _val

mxcubecore/HardwareObjects/FlexHCD.py

@@ -1,5 +1,4 @@
 import base64
-import logging
 import pickle
 
 import gevent
@@ -320,7 +319,7 @@ class FlexHCD(SampleChanger):
                 if "on_gonio" in loading_state:
                     self._set_loaded_sample(sample)
                     with gevent.Timeout(60, RuntimeError(err_msg)):
-                        logging.getLogger("HWR").info(err_msg)
+                        self.log.info(err_msg)
                         while not self._execute_cmd_exporter(
                             "getRobotIsSafe", attribute=True
                         ):
@@ -333,7 +332,7 @@ class FlexHCD(SampleChanger):
                 if "on_gonio" in loading_state:
                     self._set_loaded_sample(sample)
                     with gevent.Timeout(60, RuntimeError(err_msg)):
-                        logging.getLogger("HWR").info(err_msg)
+                        self.log.info(err_msg)
                         while (
                             not self._execute_cmd(
                                 "get_robot_cache_variable", "data:dioRobotIsSafe"
@@ -344,9 +343,9 @@ class FlexHCD(SampleChanger):
                     return True
             gevent.sleep(2)
 
-        logging.getLogger("HWR").info("unload load task done")
+        self.log.info("unload load task done")
         for msg in self.get_robot_exceptions():
-            logging.getLogger("HWR").error(msg)
+            self.log.error(msg)
 
         return self._check_pin_on_gonio()
 
@@ -361,7 +360,7 @@ class FlexHCD(SampleChanger):
             self._prepare_centring_task()
             return True
         else:
-            logging.getLogger("HWR").info("reset loaded sample")
+            self.log.info("reset loaded sample")
             self._reset_loaded_sample()
             # if self.controller:
             #    self.controller.hutch_actions(release_interlock=True)
@@ -392,7 +391,7 @@ class FlexHCD(SampleChanger):
             res = SampleChanger.load(self, sample)
         finally:
             for msg in self.get_robot_exceptions():
-                logging.getLogger("HWR").error(msg)
+                self.log.error(msg)
         if res:
             self.prepare_centring()
         return res
@@ -425,7 +424,7 @@ class FlexHCD(SampleChanger):
             SampleChanger.unload(self, sample)
         finally:
             for msg in self.get_robot_exceptions():
-                logging.getLogger("HWR").error(msg)
+                self.log.error(msg)
 
     def get_gripper(self):
         if self.exporter_addr:

mxcubecore/HardwareObjects/FlexHCDMaintenance.py

@@ -3,7 +3,6 @@ FLEX HCD maintenance mockup.
 """
 
 import ast
-import logging
 
 from mxcubecore.BaseHardwareObjects import HardwareObject
 
@@ -160,7 +159,7 @@ class FlexHCDMaintenance(HardwareObject):
         try:
             grippers = self._sc.get_available_grippers()
         except Exception:
-            logging.getLogger("HWR").exception("")
+            self.log.exception("")
         else:
             gripper_cmd_list = []