mxcubecore 1.392.0__py3-none-any.whl → 1.393.0__py3-none-any.whl

mxcubecore/BaseHardwareObjects.py

@@ -486,7 +486,7 @@ class HardwareObjectNode:
         try:
             index = self.__objects_names.index(object_name)
         except ValueError:
-            pass
+            logging.getLogger("HWR").exception("")
         else:
             for obj in self.__objects[index]:
                 yield obj

mxcubecore/Command/Epics.py

@@ -141,7 +141,7 @@ class EpicsCommand(CommandObject):
         try:
             callback = self.__value_changed_callback_ref()
         except Exception:
-            pass
+            logging.getLogger("HWR").exception("")
         else:
             if callback is not None:
                 callback(value)
@@ -155,7 +155,7 @@ class EpicsCommand(CommandObject):
             try:
                 poller.restart(1000)
             except Exception:
-                pass
+                logging.getLogger("HWR").exception("")
 
     def get_pv_value(self):
         """wrapper function to pv.get() in order to supply additional named parameter"""

mxcubecore/Command/Pool.py

@@ -141,9 +141,9 @@ def process_tango_events():
                     try:
                         receiver_cb(event.attr_value.value)
                     except AttributeError:
-                        pass
+                        logging.getLogger("HWR").exception("")
             except KeyError:
-                pass
+                logging.getLogger("HWR").exception("")
 
 
 class PoolChannel(ChannelObject):
@@ -217,7 +217,7 @@ class PoolChannel(ChannelObject):
                                 self.attribute_name, PyTango.EventType.CHANGE, self, []
                             )
                         except PyTango.EventSystemFailed:
-                            pass
+                            logging.getLogger("HWR").exception("")
 
     def push_event(self, event):
         PoolChannel._eventReceivers[id(event)] = BoundMethodWeakref(self.update)
@@ -250,7 +250,7 @@ class PoolChannel(ChannelObject):
         try:
             s = self.device.State()
         except Exception:
-            pass
+            logging.getLogger("HWR").exception("")
         else:
             if s == PyTango.DevState.OFF:
                 return

mxcubecore/Command/Sardana.py

@@ -84,9 +84,9 @@ def processSardanaEvents():
                     try:
                         gevent.spawn(receiver_cb, ev)
                     except AttributeError:
-                        pass
+                        logging.getLogger("HWR").exception("")
             except KeyError:
-                pass
+                logging.getLogger("HWR").exception("")
 
 
 def wait_end_of_command(cmdobj):
@@ -188,6 +188,8 @@ class SardanaMacro(CommandObject, SardanaObject, ChannelObject):
                 "  - Wrong format for macro arguments. Macro is %s / args are (%s)"
                 % (self.macro_format, str(args))
             )
+
+            logging.getLogger("HWR").exception("")
             return
 
         try:
@@ -399,6 +401,8 @@ class SardanaChannel(ChannelObject, SardanaObject):
             self.attribute = Attribute(self.model)
         except DevFailed as traceback:
             self.imported = False
+
+            logging.getLogger("HWR").exception("")
             return
 
         # read information
@@ -471,7 +475,7 @@ class SardanaChannel(ChannelObject, SardanaObject):
             self.emit("update", self.value)
         except AttributeError:
             # No value in data... this is probably a connection error
-            pass
+            logging.getLogger("HWR").exception("")
 
     def is_connected(self):
         return self.attribute is not None

mxcubecore/Command/Taco.py

@@ -104,7 +104,7 @@ class TacoCommand(CommandObject):
         try:
             callback = self.__value_changed_callback_ref()
         except Exception:
-            pass
+            logging.getLogger("HWR").exception("")
         else:
             if callback is not None:
                 callback(device_name, value)
@@ -116,7 +116,7 @@ class TacoCommand(CommandObject):
             try:
                 poller.restart(1000)
             except Exception:
-                pass
+                logging.getLogger("HWR").exception("")
 
     def poll(
         self,

mxcubecore/Command/Tango.py

@@ -133,9 +133,9 @@ def process_tango_events():
                     try:
                         gevent.spawn(receiverCb, ev.event.attr_value.value)
                     except AttributeError:
-                        pass
+                        logging.getLogger("HWR").exception("")
             except KeyError:
-                pass
+                logging.getLogger("HWR").exception("")
 
 
 class E:

mxcubecore/Command/Tine.py

@@ -82,7 +82,7 @@ class TineCommand(CommandObject):
         except IOError as strerror:
             logging.getLogger("HWR").error("%s" % strerror)
         except Exception:
-            pass
+            logging.getLogger("HWR").exception("")
         return result
 
     def abort(self):

mxcubecore/Command/exporter/ExporterClient.py

@@ -59,7 +59,7 @@ class ExporterClient(StandardClient):
                 tokens = msg[4:].split(PARAMETER_SEPARATOR)
                 self.on_event(tokens[0], tokens[1], int(tokens[2]))
             except Exception:
-                pass
+                logging.getLogger("HWR").exception("")
         else:
             StandardClient.on_message_received(self, msg)
 
@@ -187,7 +187,7 @@ class ExporterClient(StandardClient):
         try:
             process_return = self.__process_return(ret)
         except Exception:
-            pass
+            logging.getLogger("HWR").exception("")
         return process_return
 
     def read_property_as_string_array(self, prop):

mxcubecore/Command/exporter/StandardClient.py

@@ -20,6 +20,7 @@
 
 """ProtocolError and StandardClient implementation"""
 
+import logging
 import socket
 import sys
 
@@ -109,7 +110,7 @@ class StandardClient:
         try:
             self.__sock.close()
         except Exception:
-            pass
+            logging.getLogger("HWR").exception("")
         self._is_connected = False
         self.__sock = None
         self.received_msg = None
@@ -249,7 +250,7 @@ class StandardClient:
         try:
             self.on_connected()
         except Exception:
-            pass
+            logging.getLogger("HWR").exception("")
         buffer = empty_buffer()
         mReceivedSTX = False
         while True:
@@ -288,7 +289,7 @@ class StandardClient:
         try:
             self.on_disconnected()
         except Exception:
-            pass
+            logging.getLogger("HWR").exception("")
 
     def __send_stream(self, cmd):
         """Send a command.

mxcubecore/HardwareObjects/ALBA/ALBABeamInfo.py

@@ -78,7 +78,7 @@ class ALBABeamInfo(HardwareObject):
                 self.get_property("beam_divergence_horizontal")
             )
         except Exception:
-            pass
+            logging.getLogger("HWR").exception("")
 
         self.default_beam_divergence = [
             default_beam_divergence_horizontal,

mxcubecore/HardwareObjects/ALBA/ALBACollect.py

@@ -85,7 +85,7 @@ class ALBACollect(AbstractCollect):
             for undulator in self["undulators"]:
                 undulators.append(undulator)
         except Exception:
-            pass
+            logging.getLogger("HWR").exception("")
 
         self.exp_type_dict = {"Mesh": "raster", "Helical": "Helical"}
 
@@ -815,7 +815,7 @@ class ALBACollect(AbstractCollect):
                 else:
                     return und_gaps
         except Exception:
-            pass
+            logging.getLogger("HWR").exception("")
         return {}
 
     def get_slit_gaps(self):

mxcubecore/HardwareObjects/ALBA/ALBAFlux.py

@@ -19,7 +19,7 @@ class ALBAFlux(Device, AbstractFlux.AbstractFlux):
             if fluxlast > 1e7:
                 return self.last_current_trans()
         except Exception:
-            pass
+            logging.getLogger("HWR").exception("")
 
         logging.getLogger("HWR").debug(
             " Abnormally low value of flux. Returning default value"

mxcubecore/HardwareObjects/ALBA/ALBAISPyBClient.py

@@ -60,7 +60,7 @@ class ALBAISPyBClient(ProposalISPyBClient):
                 logging.debug("ALBA ISPyBClient - %s is %s " % (prop, ispyb_path))
                 mx_collect_dict[prop] = ispyb_path
             except Exception:
-                pass
+                logging.getLogger("HWR").exception("")
 
     def prepare_image_for_lims(self, image_dict):
         for prop in ["jpegThumbnailFileFullPath", "jpegFileFullPath"]:
@@ -69,7 +69,7 @@ class ALBAISPyBClient(ProposalISPyBClient):
                 ispyb_path = HWR.beamline.session.path_to_ispyb(path)
                 image_dict[prop] = ispyb_path
             except Exception:
-                pass
+                logging.getLogger("HWR").exception("")
 
 
 def test_hwo(hwo):

mxcubecore/HardwareObjects/ALBA/ALBAPilatus.py

@@ -112,7 +112,7 @@ class ALBAPilatus(AbstractDetector, HardwareObject):
             beam_x = self.beamx_chan.get_value()
             beam_y = self.beamy_chan.get_value()
         except Exception:
-            pass
+            logging.getLogger("HWR").exception("")
         return beam_x, beam_y
 
     def get_manufacturer(self):

mxcubecore/HardwareObjects/BeamInfo.py

@@ -91,7 +91,7 @@ class BeamInfo(HardwareObject):
                 self.get_property("beam_divergence_horizontal")
             )
         except Exception:
-            pass
+            logging.getLogger("HWR").exception("")
         self.default_beam_divergence = [
             default_beam_divergence_horizontal,
             default_beam_divergence_vertical,

mxcubecore/HardwareObjects/BlissHutchTrigger.py

@@ -60,6 +60,8 @@ class BlissHutchTrigger(BaseHardwareObjects.HardwareObject):
             self.card, self.channel = map(int, PSSinfo.split("/"))
         except Exception:
             logging.getLogger().error("%s: cannot find PSS number", self.name())
+
+            logging.getLogger("HWR").exception("")
             return
 
         if self.device is not None:

mxcubecore/HardwareObjects/Cats90.py

@@ -429,7 +429,7 @@ class Cats90(SampleChanger):
             self.basket_types = self.cats_device.read_attribute("CassetteType").value
             self.number_of_baskets = len(self.basket_types)
         except PyTango.DevFailed:
-            pass
+            logging.getLogger("HWR").exception("")
 
         # find number of baskets and number of samples per basket
         if self.number_of_baskets is not None:
@@ -539,7 +539,7 @@ class Cats90(SampleChanger):
             if unipuck_tool:
                 self.set_unipuck_tool(unipuck_tool)
         except Exception:
-            pass
+            logging.getLogger("HWR").exception("")
 
         self.update_info()
 
@@ -690,7 +690,7 @@ class Cats90(SampleChanger):
                         Pin.get_sample_address(basket_no, sample_no)
                     )
         except Exception:
-            pass
+            logging.getLogger("HWR").exception("")
         self._set_selected_component(basket)
         self._set_selected_sample(sample)
 

mxcubecore/HardwareObjects/CatsBessy.py

@@ -1,3 +1,4 @@
+import logging
 import time
 
 from mxcubecore.HardwareObjects.abstract.AbstractSampleChanger import (
@@ -371,7 +372,7 @@ class CatsBessy(SampleChanger):
                         Pin.get_sample_address(basket_no, sample_no)
                     )
         except Exception:
-            pass
+            logging.getLogger("HWR").exception("")
         self._set_selected_component(basket)
         self._set_selected_sample(sample)
 

mxcubecore/HardwareObjects/DESY/DigitalZoomMotor.py

@@ -55,6 +55,8 @@ class DigitalZoomMotor(AbstractMotor, HardwareObject):
             self.camera = self.get_object_by_role("camera")
         except KeyError:
             logging.getLogger("HWR").warning("DigitalZoomMotor: camera not defined")
+
+            logging.getLogger("HWR").exception("")
             return
         try:
             self.read_only = not (self.camera.zoom_exists())

mxcubecore/HardwareObjects/DESY/MjpgStreamVideo.py

@@ -1,3 +1,5 @@
+import logging
+
 # encoding: utf-8
 #
 #  Project name: MXCuBE
@@ -375,6 +377,8 @@ class MjpgStreamVideo(AbstractVideoDevice):
                     host, port, path, query
                 )
             )
+
+            logging.getLogger("HWR").exception("")
             return None
         if response.status != 200:
             self.log.error(

mxcubecore/HardwareObjects/DESY/P11Collect.py

@@ -1137,6 +1137,8 @@ class P11Collect(AbstractCollect):
                         os.mkdir(path, mode=0o777)
                     except RuntimeError:
                         self.log.debug("mkdir failed:", str(sys.exc_info()))
+
+                        logging.getLogger("HWR").exception("")
                         return False
                 else:
                     self.log.debug("dir not found:", str(sys.exc_info()))

mxcubecore/HardwareObjects/DESY/P11EDNACharacterisation.py

@@ -255,20 +255,20 @@ class P11EDNACharacterisation(EDNACharacterisation):
             wavelength = HWR.beamline.energy.get_wavelength()
             beam.setWavelength(XSDataWavelength(wavelength))
         except AttributeError:
-            pass
+            logging.getLogger("HWR").exception("")
 
         try:
             # Flux get_value() subsequently executing measure_flux() to fill in the dictionary
 
             beam.setFlux(XSDataFlux(HWR.beamline.flux.get_value()))
         except AttributeError:
-            pass
+            logging.getLogger("HWR").exception("")
 
         try:
             min_exp_time = self.collect_obj.detector_hwobj.get_exposure_time_limits()[0]
             beam.setMinExposureTimePerImage(XSDataTime(min_exp_time))
         except AttributeError:
-            pass
+            logging.getLogger("HWR").exception("")
 
         try:
             beamsize = self.collect_obj.beam_info_hwobj.get_beam_size()
@@ -281,7 +281,7 @@ class P11EDNACharacterisation(EDNACharacterisation):
                     )
                 )
         except AttributeError:
-            pass
+            logging.getLogger("HWR").exception("")
 
         # Optimization parameters
         diff_plan = edna_input.getDiffractionPlan()
@@ -476,7 +476,7 @@ class P11EDNACharacterisation(EDNACharacterisation):
             collection_plan = edna_strategy.getCollectionPlan()[0]
             wedges = collection_plan.getCollectionStrategy().getSubWedge()
         except Exception:
-            pass
+            logging.getLogger("HWR").exception("")
         else:
             try:
                 resolution = (
@@ -558,7 +558,7 @@ class P11EDNACharacterisation(EDNACharacterisation):
                         goniostat.getRotationAxisStart().getValue()
                     )
                 except AttributeError:
-                    pass
+                    logging.getLogger("HWR").exception("")
                 """ GB:
                 try:
                     acquisition_parameters.osc_end = (
@@ -574,7 +574,7 @@ class P11EDNACharacterisation(EDNACharacterisation):
                         goniostat.getOscillationWidth().getValue()
                     )
                 except AttributeError:
-                    pass
+                    logging.getLogger("HWR").exception("")
 
                 try:
                     num_images = int(
@@ -591,26 +591,26 @@ class P11EDNACharacterisation(EDNACharacterisation):
                     acq.path_template.start_num = 1
 
                 except AttributeError:
-                    pass
+                    logging.getLogger("HWR").exception("")
 
                 try:
                     acquisition_parameters.transmission = (
                         beam.getTransmission().getValue()
                     )
                 except AttributeError:
-                    pass
+                    logging.getLogger("HWR").exception("")
 
                 try:
                     acquisition_parameters.energy = round(
                         (123_984.0 / beam.getWavelength().getValue()) / 10000.0, 4
                     )
                 except AttributeError:
-                    pass
+                    logging.getLogger("HWR").exception("")
 
                 try:
                     acquisition_parameters.exp_time = beam.getExposureTime().getValue()
                 except AttributeError:
-                    pass
+                    logging.getLogger("HWR").exception("")
 
                 dc = qmo.DataCollection([acq], crystal, processing_parameters)
                 data_collections.append(dc)
@@ -652,6 +652,6 @@ class P11EDNACharacterisation(EDNACharacterisation):
             html_report = html_report.replace("/beamline/p11", "/gpfs")
 
         except AttributeError:
-            pass
+            logging.getLogger("HWR").exception("")
 
         return html_report

mxcubecore/HardwareObjects/DESY/P11ISPyBClient.py

@@ -106,7 +106,7 @@ class P11ISPyBClient(ProposalISPyBClient):
                 logging.debug("P11 ISPyBClient - %s is %s " % (prop, ispyb_path))
                 mx_collect_dict[prop] = ispyb_path
             except RuntimeWarning("Can not get ISPyB path for %s" % prop):
-                pass
+                logging.getLogger("HWR").exception("")
 
     def prepare_image_for_lims(self, image_dict):
         for prop in ["jpegThumbnailFileFullPath", "jpegFileFullPath"]:
@@ -115,7 +115,7 @@ class P11ISPyBClient(ProposalISPyBClient):
                 ispyb_path = HWR.beamline.session.path_to_ispyb(path)
                 image_dict[prop] = ispyb_path
             except RuntimeWarning("Can not prepare image path fir LIMS for %s" % prop):
-                pass
+                logging.getLogger("HWR").exception("")
 
     def get_proposal(self, proposal_code, proposal_number):
         logging.getLogger("HWR").debug(

mxcubecore/HardwareObjects/DESY/P11NanoDiff.py

@@ -1473,6 +1473,8 @@ class P11NanoDiff(GenericDiffractometer):
                 self.log.rror(
                     "motor_positions is not a dict and cannot be converted using as_dict()"
                 )
+
+                logging.getLogger("HWR").exception("")
                 return
 
         # Move translation motors

mxcubecore/HardwareObjects/EMBL/EMBLBeamFocusing.py

@@ -96,7 +96,7 @@ class EMBLBeamFocusing(HardwareObject):
         try:
             self.cmd_set_phase = eval(self.get_property("setPhaseCmd"))
         except Exception:
-            pass
+            logging.getLogger("HWR").exception("")
 
         self.aperture_hwobj = self.get_object_by_role("aperture")
 

mxcubecore/HardwareObjects/EMBL/EMBLBeamlineTest.py

@@ -116,6 +116,8 @@ class EMBLBeamlineTest(HardwareObject):
                 logging.getLogger("HWR").warning(
                     "BeamlineTest: Unable to create test directories"
                 )
+
+                logging.getLogger("HWR").exception("")
                 return
 
         self.results_list = []

mxcubecore/HardwareObjects/EMBL/EMBLEnergyScan.py

@@ -377,6 +377,8 @@ class EMBLEnergyScan(AbstractEnergyScan, HardwareObject):
             self.store_energy_scan()
 
             logging.getLogger("GUI").error("Energy scan: Chooch failed")
+
+            logging.getLogger("HWR").exception("")
             return None, None, None, None, None, None, None, [], [], [], None
 
         rm = (pk + 30) / 1000.0
@@ -514,7 +516,7 @@ class EMBLEnergyScan(AbstractEnergyScan, HardwareObject):
                     }
                 )
         except IndexError:
-            pass
+            logging.getLogger("HWR").exception("")
         return elements
 
     def get_scan_data(self):

mxcubecore/HardwareObjects/EMBL/EMBLFlux.py

@@ -428,7 +428,7 @@ class EMBLFlux(AbstractFlux):
                 self.cmd_flux_record([_x["flux"] for _x in self.measured_flux_list])
                 gevent.sleep(2)
             except Exception:
-                pass
+                logging.getLogger("HWR").exception("")
 
             max_frame_rate = 25
         else:

mxcubecore/HardwareObjects/EMBL/TINEMotor.py

@@ -19,6 +19,8 @@
 
 """TINEMotor class defines motor in the TINE control system"""
 
+import logging
+
 import gevent
 
 from mxcubecore.BaseHardwareObjects import HardwareObjectState
@@ -63,7 +65,7 @@ class TINEMotor(AbstractMotor):
                 if self.get_property("default_limits"):
                     self.update_limits(eval(self.get_property("default_limits")))
             except Exception:
-                pass
+                logging.getLogger("HWR").exception("")
 
         self.chan_position = self.get_channel_object("axisPosition")
         if self.chan_position is not None:
@@ -92,7 +94,7 @@ class TINEMotor(AbstractMotor):
         try:
             self.step_limits = eval(self.get_property("stepLimits"))
         except Exception:
-            pass
+            logging.getLogger("HWR").exception("")
 
     def connected(self):
         """

mxcubecore/HardwareObjects/ESRF/ESRFBeam.py

@@ -398,4 +398,4 @@ class ESRFBeam(AbstractBeam):
                 if self._monitorbeam_obj.get_value().value:
                     self._beam_check_obj.wait_for_beam(timeout)
             except AttributeError:
-                pass
+                logging.getLogger("HWR").exception("")

mxcubecore/HardwareObjects/ESRF/ESRFBeamlineActions.py

@@ -36,6 +36,7 @@ Example xml file:
 """
 
 import ast
+import logging
 
 from mxcubecore.HardwareObjects.BeamlineActions import (
     BeamlineActions,
@@ -69,7 +70,7 @@ class ESRFBeamlineActions(BeamlineActions):
                     action = getattr(controller, key)
                     self.ctrl_list.append(ControllerCommand(name, action))
         except KeyError:
-            pass
+            logging.getLogger("HWR").exception("")
 
         try:
             hwobj_cmd_roles = ast.literal_eval(
@@ -86,7 +87,7 @@ class ESRFBeamlineActions(BeamlineActions):
                     except:
                         pass
         except AttributeError:
-            pass
+            logging.getLogger("HWR").exception("")
 
     def get_commands(self):
         """Get which objects to be used in the GUI

mxcubecore/HardwareObjects/ESRF/ESRFMetadataManagerClient.py

@@ -253,7 +253,7 @@ class MXCuBEMetadataClient(object):
                 )
                 smtp.quit()
             except Exception:
-                pass
+                logging.getLogger("HWR").exception("")
         return errorMessage
 
     def start(self, data_collect_parameters):

mxcubecore/HardwareObjects/ESRF/ID29HutchTrigger.py

@@ -42,6 +42,8 @@ class ID29HutchTrigger(BaseHardwareObjects.HardwareObject):
             self.card, self.channel = map(int, PSSinfo.split("/"))
         except Exception:
             logging.getLogger().error("%s: cannot find PSS number", self.name())
+
+            logging.getLogger("HWR").exception("")
             return
 
         if self.device is not None:

mxcubecore/HardwareObjects/ESRF/MD2MultiCollect.py

@@ -22,7 +22,7 @@ class MD2MultiCollect(ESRFMultiCollect):
             comment = HWR.beamline.sample_changer.get_crystal_id()
             data_collect_parameters["comment"] = comment
         except Exception:
-            pass
+            logging.getLogger("HWR").exception("")
 
     @task
     def get_beam_size(self):

mxcubecore/HardwareObjects/FlexHCDMaintenance.py

@@ -3,6 +3,7 @@ FLEX HCD maintenance mockup.
 """
 
 import ast
+import logging
 
 from mxcubecore.BaseHardwareObjects import HardwareObject
 
@@ -159,7 +160,7 @@ class FlexHCDMaintenance(HardwareObject):
         try:
             grippers = self._sc.get_available_grippers()
         except Exception:
-            pass
+            logging.getLogger("HWR").exception("")
         else:
             gripper_cmd_list = []