mxcubecore 1.381.0__py3-none-any.whl → 1.383.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- mxcubecore/HardwareObjects/ESRF/ESRFEnergyScan.py +235 -197
- mxcubecore/HardwareObjects/ICATLIMS.py +351 -300
- {mxcubecore-1.381.0.dist-info → mxcubecore-1.383.0.dist-info}/METADATA +1 -1
- {mxcubecore-1.381.0.dist-info → mxcubecore-1.383.0.dist-info}/RECORD +7 -9
- mxcubecore/HardwareObjects/ESRF/ID231EnergyScan.py +0 -40
- mxcubecore/HardwareObjects/ESRF/ID29EnergyScan.py +0 -77
- {mxcubecore-1.381.0.dist-info → mxcubecore-1.383.0.dist-info}/COPYING +0 -0
- {mxcubecore-1.381.0.dist-info → mxcubecore-1.383.0.dist-info}/COPYING.LESSER +0 -0
- {mxcubecore-1.381.0.dist-info → mxcubecore-1.383.0.dist-info}/WHEEL +0 -0
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@@ -141,7 +141,7 @@ mxcubecore/HardwareObjects/ESRF/ESRFBeam.py,sha256=9B6VgoG5pUIExgY08sUyvL3LYniUW
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141
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mxcubecore/HardwareObjects/ESRF/ESRFBeamDefiner.py,sha256=D_dG30DRQNInpfzLlDHPTbhvPq6fExCU4AquzHg8Dw4,3798
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142
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mxcubecore/HardwareObjects/ESRF/ESRFBeamInfo.py,sha256=_JLCOPwhcwd-9REnrBOQlgvJgKqTseaA2aRc4cM_ai8,2298
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143
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mxcubecore/HardwareObjects/ESRF/ESRFBeamlineActions.py,sha256=GGC1_9rEd1RQzGdOoVdIAGAjOPtwpjpoUFVcJHT9oTc,3259
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144
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-
mxcubecore/HardwareObjects/ESRF/ESRFEnergyScan.py,sha256=
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144
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+
mxcubecore/HardwareObjects/ESRF/ESRFEnergyScan.py,sha256=XEJGWwKL1ZT1n-GKVNzpboCQ_NCQJPKbG19xvk6hCRA,15513
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145
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mxcubecore/HardwareObjects/ESRF/ESRFMD2SC3.py,sha256=jTbMmwp_HYFD8Vr6Hk-y1Hwi9UcSqsrbhGji7dfRpC4,1469
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146
146
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mxcubecore/HardwareObjects/ESRF/ESRFMetadataManagerClient.py,sha256=bGFsp6EjU1Xb8iujJ90Tph95F335rnKYvimYTwcp2bE,22122
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147
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mxcubecore/HardwareObjects/ESRF/ESRFMultiCollect.py,sha256=38eXiTn0o3u_hcG5vuZSY-jkySRZkXOAgMH5OuRqIF4,22937
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@@ -150,9 +150,7 @@ mxcubecore/HardwareObjects/ESRF/ESRFSC3.py,sha256=Mw2Lj_0w7TapaCesDxhRWSAY1PRG4D
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mxcubecore/HardwareObjects/ESRF/ESRFSession.py,sha256=iIcJUM0cVlwJdqNZo-L7IY_S2KYHQXPQPupbv4JoAkk,4323
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mxcubecore/HardwareObjects/ESRF/ESRFSmallXrayCentring.py,sha256=YJFMtb3VxHchxTWi_pqrEz3ML1YunoYLkAseDZqF1JA,3617
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mxcubecore/HardwareObjects/ESRF/ESRFXRFSpectrum.py,sha256=4zN3F_VsmQWQVfNwIV9qcUlVLeB830FOl8I36y7xClc,12217
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153
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mxcubecore/HardwareObjects/ESRF/ID231EnergyScan.py,sha256=f6Loqqgl5E64-xACuK-6nF2sH9ftpwa7e1It0C1e-s4,1144
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mxcubecore/HardwareObjects/ESRF/ID232BeamDefiner.py,sha256=4Piso4ftMDSBw3rZJpjoJtU-ARkxVa1Vy49BybleCyY,5030
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155
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mxcubecore/HardwareObjects/ESRF/ID29EnergyScan.py,sha256=9Nscojz8KonwWZltpIcRwH06RC2AtZKZGu-oEbMqLLg,2778
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mxcubecore/HardwareObjects/ESRF/ID29HutchTrigger.py,sha256=vKLuCSuKcHQLvTysQ3r2PGlzY5FkVIDRZt5oOZd3cBE,2949
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mxcubecore/HardwareObjects/ESRF/ID30A3BeamDefiner.py,sha256=V7gn4JTYhzG0ajeJwjR68MbJuDt26mHaNROHhd1Z0QI,3996
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mxcubecore/HardwareObjects/ESRF/ID30BBeamDefiner.py,sha256=uZJ0szJFdGysZsgiaxxUYKq1nPVYwK4jZ3xMX74cwqU,5046
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@@ -198,7 +196,7 @@ mxcubecore/HardwareObjects/GrobMotor.py,sha256=l5A9Us_ceLXlhEF6RNwyXQsI56fJiobWh
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mxcubecore/HardwareObjects/GrobSampleChanger.py,sha256=LMetcL45fWrwP4C8rtENrEDNydelLpJ77SD1JC5C3go,8113
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197
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mxcubecore/HardwareObjects/Harvester.py,sha256=0TYUXmz-Pmfd7Dhz7ToUGHzJRuJmnga8-4BK4B0KGQA,26524
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mxcubecore/HardwareObjects/HarvesterMaintenance.py,sha256=8s4yHDEFG-C1WYyW_RlwrFPSpc8o5hGi14aQuFQFrHs,9405
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mxcubecore/HardwareObjects/ICATLIMS.py,sha256=
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mxcubecore/HardwareObjects/ICATLIMS.py,sha256=irvsn5xLy0CZpheFG_UGUzFO1nIKn5Mz3GVGZt9c2ic,53129
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mxcubecore/HardwareObjects/ISARAMaint.py,sha256=I8LHXK6wCfzixsxWmmcqWlrdaL3AOX91XmVeAwT7GPk,8959
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mxcubecore/HardwareObjects/LNLS/EPICSActuator.py,sha256=3dDj6aXyTz03m8osdA6udq_a4bch-KNcUMrXSNvbG5Q,2587
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mxcubecore/HardwareObjects/LNLS/EPICSMotor.py,sha256=lRTc1t32rJKNTIcnKCECrqo2m9BhlYvLq9NWg4Y0w0Q,3576
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@@ -469,8 +467,8 @@ mxcubecore/utils/conversion.py,sha256=G1bk2Mi2ZwGbZa5pEeiFaKWxhSVXVGqu1L9_SioyUO
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mxcubecore/utils/qt_import.py,sha256=0lPmqok_oYQZ059kJCq7RWdg490T8YKyRvoZGyWDy4M,14486
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mxcubecore/utils/tango.py,sha256=vwEVrIrWKEFaeaJUz3xbaC7XWHY8ZeJ-pfcSrTfZPIE,2114
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mxcubecore/utils/units.py,sha256=Gh7ovTUN00XBMUoyDG5W7akCx1pROL-M6pK2z1ouemg,1361
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mxcubecore-1.
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mxcubecore-1.
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mxcubecore-1.
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mxcubecore-1.
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mxcubecore-1.
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mxcubecore-1.383.0.dist-info/COPYING,sha256=u-Mc8zCecwyo4YoP8UulmzCiZZ_MmCLROd_NBtOcRj0,35148
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mxcubecore-1.383.0.dist-info/COPYING.LESSER,sha256=46mU2C5kSwOnkqkw9XQAJlhBL2JAf1_uCD8lVcXyMRg,7652
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mxcubecore-1.383.0.dist-info/METADATA,sha256=nrnsJBWuJJo-Js9kkMNx0i9UBzuIPDzKXmLe15D0LiY,4259
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473
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mxcubecore-1.383.0.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
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mxcubecore-1.383.0.dist-info/RECORD,,
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@@ -1,40 +0,0 @@
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from mxcubecore.TaskUtils import task
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from .ESRFEnergyScan import (
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ESRFEnergyScan,
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TunableEnergy,
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)
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class ID231EnergyScan(ESRFEnergyScan):
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def __init__(self, name):
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ESRFEnergyScan.__init__(self, name, TunableEnergy())
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@task
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def energy_scan_hook(self, energy_scan_parameters):
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self.energy = energy_scan_parameters["edgeEnergy"]
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if self.energy_scan_parameters["findattEnergy"]:
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ESRFEnergyScan.move_energy(self, energy_scan_parameters["findattEnergy"])
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def calculate_und_gaps(self, energy, undulator="u21d"):
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GAPS = {}
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return GAPS
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@task
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def move_undulators(self, gaps):
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pass
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@task
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def set_mca_roi(self, eroi_min, eroi_max):
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self.execute_command("calculateMcaRoi", eroi_min, eroi_max)
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@task
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def choose_attenuation(self):
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self.execute_command("chooseAttenuation")
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self.energy_scan_parameters["transmissionFactor"] = (
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self.transmission.get_value()
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)
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@task
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def execute_energy_scan(self, energy_scan_parameters):
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self.execute_command("executeScan", energy_scan_parameters)
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from datetime import datetime
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from mxcubecore import HardwareRepository as HWR
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from .ESRFEnergyScan import ESRFEnergyScan
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class ID29EnergyScan(ESRFEnergyScan):
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def energy_scan_hook(self, energy_scan_parameters):
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self.energy = energy_scan_parameters["edgeEnergy"]
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if self.energy_scan_parameters["findattEnergy"]:
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HWR.beamline.energy.set_value(energy_scan_parameters["findattEnergy"])
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def set_mca_roi(self, eroi_min, eroi_max):
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"""
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self.mca = self.get_object_by_role("MCA")
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self.energy_scan_parameters["fluorescenceDetector"] = self.mca.get_property(
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"username"
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)
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"""
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self.energy_scan_parameters["fluorescenceDetector"] = "KETEK_AXAS-A"
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# check if roi in eV or keV
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if eroi_min > 1000:
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eroi_min /= 1000.0
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eroi_max /= 1000.0
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self.ctrl.mca.set_roi(
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eroi_min,
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eroi_max,
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channel=1,
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element=self.energy_scan_parameters["element"],
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atomic_nb=self.energy_scan_parameters["atomic_nb"],
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)
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print(self.ctrl.mca.get_roi())
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def choose_attenuation(self):
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eroi_min = self.energy_scan_parameters["eroi_min"]
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eroi_max = self.energy_scan_parameters["eroi_max"]
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self.ctrl.detcover.set_in()
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self.ctrl.find_max_attenuation(
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ctime=2, roi=[eroi_min, eroi_max], datafile="/tmp/abb"
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)
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self.energy_scan_parameters["transmissionFactor"] = (
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HWR.beamline.transmission.get_value()
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)
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def execute_energy_scan(self, energy_scan_parameters):
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startE = energy_scan_parameters["startEnergy"]
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endE = energy_scan_parameters["endEnergy"]
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dd = datetime.now()
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fname = "%s/%s_%s_%s_%s.scan" % (
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energy_scan_parameters["directory"],
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energy_scan_parameters["prefix"],
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datetime.strftime(dd, "%d"),
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datetime.strftime(dd, "%B"),
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datetime.strftime(dd, "%Y"),
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)
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self.ctrl.energy_scan.do_energy_scan(startE, endE, datafile=fname)
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"""
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self.energy_scan_parameters["exposureTime"] = self.ctrl.MONOSCAN_INITSTATE[
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"exposure_time"
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]
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"""
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def escan_prepare(self):
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self.ctrl = self.get_object_by_role("controller")
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self.ctrl.detcover.set_in()
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self.ctrl.diffractometer.fldet_in()
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# self.ctrl.fluodet.IN
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self.ctrl.diffractometer.set_phase("DataCollection")
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if self.beamsize:
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# get the aperture size
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bsX = self.beamsize.get_size(self.beamsize.get_value().name)
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self.energy_scan_parameters["beamSizeHorizontal"] = bsX
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self.energy_scan_parameters["beamSizeVertical"] = bsX
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