mx-bluesky 1.5.10__py3-none-any.whl → 1.5.12__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- mx_bluesky/_version.py +2 -2
- mx_bluesky/beamlines/aithre_lasershaping/experiment_plans/__init__.py +0 -0
- mx_bluesky/beamlines/aithre_lasershaping/experiment_plans/robot_load_plan.py +198 -0
- mx_bluesky/beamlines/aithre_lasershaping/goniometer_controls.py +2 -2
- mx_bluesky/beamlines/aithre_lasershaping/parameters/__init__.py +0 -0
- mx_bluesky/beamlines/aithre_lasershaping/parameters/constants.py +17 -0
- mx_bluesky/beamlines/aithre_lasershaping/parameters/robot_load_parameters.py +13 -0
- mx_bluesky/beamlines/aithre_lasershaping/pin_tip_centring.py +31 -0
- mx_bluesky/beamlines/aithre_lasershaping/robot_load.py +80 -0
- mx_bluesky/beamlines/i02_1/parameters/gridscan.py +1 -1
- mx_bluesky/beamlines/i04/__init__.py +6 -2
- mx_bluesky/beamlines/i04/callbacks/murko_callback.py +27 -12
- mx_bluesky/beamlines/i04/experiment_plans/i04_grid_detect_then_xray_centre_plan.py +94 -20
- mx_bluesky/beamlines/i04/external_interaction/__init__.py +0 -0
- mx_bluesky/beamlines/i04/external_interaction/config_server.py +15 -0
- mx_bluesky/beamlines/i04/oav_centering_plans/__init__.py +0 -0
- mx_bluesky/beamlines/i04/oav_centering_plans/oav_imaging.py +115 -0
- mx_bluesky/beamlines/i04/parameters/__init__.py +0 -0
- mx_bluesky/beamlines/i04/parameters/constants.py +21 -0
- mx_bluesky/beamlines/i04/redis_to_murko_forwarder.py +24 -1
- mx_bluesky/beamlines/i04/thawing_plan.py +149 -154
- mx_bluesky/beamlines/i24/jungfrau_commissioning/experiment_plans/do_darks.py +55 -10
- mx_bluesky/beamlines/i24/jungfrau_commissioning/plan_stubs/do_external_acquisition.py +1 -1
- mx_bluesky/beamlines/i24/jungfrau_commissioning/plan_stubs/plan_utils.py +1 -1
- mx_bluesky/beamlines/i24/serial/__init__.py +7 -5
- mx_bluesky/beamlines/i24/serial/dcid.py +6 -7
- mx_bluesky/beamlines/i24/serial/extruder/{i24ssx_Extruder_Collect_py3v2.py → i24ssx_extruder_collect_py3v2.py} +70 -37
- mx_bluesky/beamlines/i24/serial/fixed_target/FT-gui-edm/CustomChip_py3v1.edl +11 -11
- mx_bluesky/beamlines/i24/serial/fixed_target/FT-gui-edm/DetStage.edl +3 -3
- mx_bluesky/beamlines/i24/serial/fixed_target/FT-gui-edm/DiamondChipI24-py3v1.edl +142 -142
- mx_bluesky/beamlines/i24/serial/fixed_target/FT-gui-edm/MappingLite-oxford_py3v1.edl +135 -135
- mx_bluesky/beamlines/i24/serial/fixed_target/FT-gui-edm/PMAC_Command.edl +8 -8
- mx_bluesky/beamlines/i24/serial/fixed_target/FT-gui-edm/pumpprobe-py3v1.edl +13 -13
- mx_bluesky/beamlines/i24/serial/fixed_target/{i24ssx_Chip_Collect_py3v1.py → i24ssx_chip_collect_py3v1.py} +12 -9
- mx_bluesky/beamlines/i24/serial/fixed_target/{i24ssx_Chip_Manager_py3v1.py → i24ssx_chip_manager_py3v1.py} +81 -78
- mx_bluesky/beamlines/i24/serial/fixed_target/{i24ssx_Chip_StartUp_py3v1.py → i24ssx_chip_startup_py3v1.py} +3 -3
- mx_bluesky/beamlines/i24/serial/fixed_target/i24ssx_moveonclick.py +33 -33
- mx_bluesky/beamlines/i24/serial/log.py +11 -11
- mx_bluesky/beamlines/i24/serial/parameters/fixed_target/cs/cs_maker.json +3 -3
- mx_bluesky/beamlines/i24/serial/parameters/utils.py +5 -5
- mx_bluesky/beamlines/i24/serial/setup_beamline/ca.py +0 -12
- mx_bluesky/beamlines/i24/serial/setup_beamline/pv.py +122 -334
- mx_bluesky/beamlines/i24/serial/setup_beamline/pv_abstract.py +5 -5
- mx_bluesky/beamlines/i24/serial/setup_beamline/setup_beamline.py +30 -251
- mx_bluesky/beamlines/i24/serial/setup_beamline/setup_detector.py +3 -3
- mx_bluesky/beamlines/i24/serial/setup_beamline/setup_zebra_plans.py +4 -4
- mx_bluesky/beamlines/i24/serial/web_gui_plans/general_plans.py +103 -16
- mx_bluesky/beamlines/i24/serial/web_gui_plans/oav_plans.py +64 -0
- mx_bluesky/beamlines/i24/serial/write_nexus.py +4 -4
- mx_bluesky/common/device_setup_plans/gonio.py +28 -0
- mx_bluesky/common/device_setup_plans/manipulate_sample.py +8 -1
- mx_bluesky/common/device_setup_plans/robot_load_unload.py +1 -1
- mx_bluesky/common/device_setup_plans/setup_oav.py +8 -0
- mx_bluesky/common/device_setup_plans/setup_zebra_and_shutter.py +0 -5
- mx_bluesky/common/device_setup_plans/xbpm_feedback.py +8 -1
- mx_bluesky/common/experiment_plans/beamstop_check.py +229 -0
- mx_bluesky/common/experiment_plans/common_flyscan_xray_centre_plan.py +8 -6
- mx_bluesky/common/experiment_plans/common_grid_detect_then_xray_centre_plan.py +2 -2
- mx_bluesky/common/experiment_plans/inner_plans/do_fgs.py +1 -1
- mx_bluesky/common/experiment_plans/inner_plans/read_hardware.py +7 -4
- mx_bluesky/common/experiment_plans/inner_plans/write_sample_status.py +2 -2
- mx_bluesky/common/experiment_plans/oav_snapshot_plan.py +1 -2
- mx_bluesky/{hyperion → common}/experiment_plans/pin_tip_centring_plan.py +23 -24
- mx_bluesky/common/external_interaction/callbacks/common/grid_detection_callback.py +5 -0
- mx_bluesky/common/external_interaction/callbacks/common/ispyb_callback_base.py +13 -15
- mx_bluesky/common/external_interaction/callbacks/common/ispyb_mapping.py +3 -5
- mx_bluesky/common/external_interaction/callbacks/common/plan_reactive_callback.py +1 -1
- mx_bluesky/common/external_interaction/callbacks/common/zocalo_callback.py +2 -2
- mx_bluesky/common/external_interaction/callbacks/sample_handling/sample_handling_callback.py +3 -3
- mx_bluesky/common/external_interaction/callbacks/xray_centre/ispyb_callback.py +12 -10
- mx_bluesky/common/external_interaction/callbacks/xray_centre/nexus_callback.py +2 -2
- mx_bluesky/common/external_interaction/config_server.py +4 -4
- mx_bluesky/common/external_interaction/ispyb/data_model.py +11 -4
- mx_bluesky/common/external_interaction/ispyb/exp_eye_store.py +163 -4
- mx_bluesky/common/external_interaction/ispyb/ispyb_store.py +76 -167
- mx_bluesky/common/external_interaction/ispyb/ispyb_utils.py +0 -14
- mx_bluesky/common/external_interaction/nexus/nexus_utils.py +2 -2
- mx_bluesky/common/external_interaction/nexus/write_nexus.py +3 -3
- mx_bluesky/common/parameters/components.py +1 -0
- mx_bluesky/common/parameters/constants.py +4 -3
- mx_bluesky/common/parameters/device_composites.py +4 -2
- mx_bluesky/common/parameters/gridscan.py +2 -2
- mx_bluesky/common/utils/exceptions.py +24 -7
- mx_bluesky/common/utils/log.py +13 -4
- mx_bluesky/common/utils/tracing.py +5 -5
- mx_bluesky/common/utils/utils.py +56 -8
- mx_bluesky/hyperion/__main__.py +6 -16
- mx_bluesky/hyperion/baton_handler.py +38 -14
- mx_bluesky/hyperion/device_setup_plans/utils.py +1 -1
- mx_bluesky/hyperion/experiment_plans/experiment_registry.py +1 -1
- mx_bluesky/hyperion/experiment_plans/hyperion_flyscan_xray_centre_plan.py +15 -13
- mx_bluesky/hyperion/experiment_plans/load_centre_collect_full_plan.py +2 -2
- mx_bluesky/hyperion/experiment_plans/optimise_attenuation_plan.py +9 -9
- mx_bluesky/hyperion/experiment_plans/pin_centre_then_xray_centre_plan.py +7 -8
- mx_bluesky/hyperion/experiment_plans/robot_load_and_change_energy.py +3 -10
- mx_bluesky/hyperion/experiment_plans/robot_load_then_centre_plan.py +4 -2
- mx_bluesky/hyperion/experiment_plans/rotation_scan_plan.py +10 -4
- mx_bluesky/hyperion/experiment_plans/set_energy_plan.py +2 -2
- mx_bluesky/hyperion/experiment_plans/udc_default_state.py +160 -0
- mx_bluesky/hyperion/external_interaction/agamemnon.py +3 -3
- mx_bluesky/hyperion/external_interaction/callbacks/__main__.py +2 -2
- mx_bluesky/hyperion/external_interaction/callbacks/rotation/ispyb_callback.py +3 -3
- mx_bluesky/hyperion/external_interaction/callbacks/rotation/ispyb_mapping.py +1 -0
- mx_bluesky/hyperion/external_interaction/callbacks/rotation/nexus_callback.py +3 -6
- mx_bluesky/hyperion/external_interaction/config_server.py +5 -5
- mx_bluesky/hyperion/parameters/constants.py +11 -4
- mx_bluesky/hyperion/parameters/device_composites.py +2 -2
- mx_bluesky/hyperion/parameters/gridscan.py +4 -4
- mx_bluesky/hyperion/parameters/robot_load.py +1 -9
- mx_bluesky/hyperion/plan_runner.py +6 -6
- mx_bluesky/hyperion/runner.py +10 -8
- mx_bluesky/jupyter_example.ipynb +3 -3
- {mx_bluesky-1.5.10.dist-info → mx_bluesky-1.5.12.dist-info}/METADATA +9 -7
- {mx_bluesky-1.5.10.dist-info → mx_bluesky-1.5.12.dist-info}/RECORD +118 -104
- mx_bluesky/common/experiment_plans/inner_plans/udc_default_state.py +0 -65
- mx_bluesky/common/external_interaction/callbacks/common/logging_callback.py +0 -29
- mx_bluesky/hyperion/device_setup_plans/smargon.py +0 -25
- {mx_bluesky-1.5.10.dist-info → mx_bluesky-1.5.12.dist-info}/WHEEL +0 -0
- {mx_bluesky-1.5.10.dist-info → mx_bluesky-1.5.12.dist-info}/entry_points.txt +0 -0
- {mx_bluesky-1.5.10.dist-info → mx_bluesky-1.5.12.dist-info}/licenses/LICENSE +0 -0
- {mx_bluesky-1.5.10.dist-info → mx_bluesky-1.5.12.dist-info}/top_level.txt +0 -0
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@@ -46,7 +46,7 @@ from mx_bluesky.beamlines.i24.serial.setup_beamline import (
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from mx_bluesky.beamlines.i24.serial.setup_beamline import setup_beamline as sup
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from mx_bluesky.beamlines.i24.serial.setup_beamline.setup_detector import (
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UnknownDetectorTypeError,
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get_detector_type,
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)
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from mx_bluesky.beamlines.i24.serial.setup_beamline.setup_zebra_plans import (
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"""
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SSX_LOGGER.debug(f"Laser check: {mode}")
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laser_ttl = zebra.mapping.outputs.TTL_PILATUS # Update with dodal changes
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if mode == "laseron":
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yield from bps.abs_set(
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zebra.output.out_pvs[
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zebra.output.out_pvs[laser_ttl], zebra.mapping.sources.SOFT_IN3
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)
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yield from set_shutter_mode(zebra, "auto")
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if mode == "laseroff":
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yield from bps.abs_set(
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zebra.output.out_pvs[
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zebra.output.out_pvs[laser_ttl], zebra.mapping.sources.DISCONNECT
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)
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yield from set_shutter_mode(zebra, "manual")
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SSX_LOGGER.debug(f"Creating the directory for the collection in {filepath}.")
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caput(pv.
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caput(pv.eiger_seq_id, int(caget(pv.eiger_seq_id)) + 1)
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SSX_LOGGER.info(f"Eiger quickshot setup: filepath {filepath}")
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SSX_LOGGER.info(f"Eiger quickshot setup: filepath {parameters.filename}")
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SSX_LOGGER.info(
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parameters.exposure_time_s,
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dcm,
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detector_stage,
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yield from setup_zebra_for_extruder_with_pump_probe_plan(
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yield from setup_zebra_for_quickshot_plan(
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raise
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filetemplate = f"{parameters.filename}.nxs"
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filetemplate = f"{complete_filename}.nxs"
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detector_stage: YZStage,
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),
|
|
465
456
|
final_plan=lambda: (
|
|
466
457
|
yield from tidy_up_at_collection_end_plan(
|
|
467
|
-
zebra, shutter, parameters, dcid, dcm
|
|
458
|
+
zebra, shutter, parameters, dcid, dcm, detector_stage
|
|
468
459
|
)
|
|
469
460
|
),
|
|
470
461
|
auto_raise=False,
|
|
471
462
|
)
|
|
463
|
+
|
|
464
|
+
|
|
465
|
+
def run_extruder_plan(
|
|
466
|
+
zebra: Zebra = inject("zebra"),
|
|
467
|
+
aperture: Aperture = inject("aperture"),
|
|
468
|
+
backlight: DualBacklight = inject("backlight"),
|
|
469
|
+
beamstop: Beamstop = inject("beamstop"),
|
|
470
|
+
detector_stage: YZStage = inject("detector_motion"),
|
|
471
|
+
shutter: HutchShutter = inject("shutter"),
|
|
472
|
+
dcm: DCM = inject("dcm"),
|
|
473
|
+
mirrors: FocusMirrorsMode = inject("focus_mirrors"),
|
|
474
|
+
attenuator: ReadOnlyAttenuator = inject("attenuator"),
|
|
475
|
+
beam_center_eiger: DetectorBeamCenter = inject("eiger_bc"),
|
|
476
|
+
) -> MsgGenerator:
|
|
477
|
+
start_time = datetime.now()
|
|
478
|
+
SSX_LOGGER.info(f"Collection start time: {start_time.ctime()}")
|
|
479
|
+
|
|
480
|
+
parameters: ExtruderParameters = yield from read_parameters(
|
|
481
|
+
detector_stage, attenuator
|
|
482
|
+
)
|
|
483
|
+
# Create collection directory
|
|
484
|
+
parameters.collection_directory.mkdir(parents=True, exist_ok=True)
|
|
485
|
+
|
|
486
|
+
beam_center_device = beam_center_eiger
|
|
487
|
+
|
|
488
|
+
# DCID - not generated yet
|
|
489
|
+
dcid = DCID(emit_errors=False, expt_params=parameters)
|
|
490
|
+
|
|
491
|
+
yield from run_plan_in_wrapper(
|
|
492
|
+
zebra,
|
|
493
|
+
aperture,
|
|
494
|
+
backlight,
|
|
495
|
+
beamstop,
|
|
496
|
+
detector_stage,
|
|
497
|
+
shutter,
|
|
498
|
+
dcm,
|
|
499
|
+
mirrors,
|
|
500
|
+
beam_center_device,
|
|
501
|
+
parameters,
|
|
502
|
+
dcid,
|
|
503
|
+
start_time,
|
|
504
|
+
)
|
|
@@ -4,7 +4,7 @@ major 4
|
|
|
4
4
|
minor 0
|
|
5
5
|
release 1
|
|
6
6
|
x 1203
|
|
7
|
-
y
|
|
7
|
+
y 581
|
|
8
8
|
w 550
|
|
9
9
|
h 380
|
|
10
10
|
font "arial-medium-r-18.0"
|
|
@@ -89,7 +89,7 @@ x 143
|
|
|
89
89
|
y 82
|
|
90
90
|
w 110
|
|
91
91
|
h 30
|
|
92
|
-
controlPv "BL24I-MO-IOC-
|
|
92
|
+
controlPv "BL24I-MO-IOC-13:GP6"
|
|
93
93
|
font "arial-medium-r-18.0"
|
|
94
94
|
fontAlign "right"
|
|
95
95
|
fgColor index 25
|
|
@@ -180,7 +180,7 @@ x 144
|
|
|
180
180
|
y 126
|
|
181
181
|
w 110
|
|
182
182
|
h 30
|
|
183
|
-
controlPv "BL24I-MO-IOC-
|
|
183
|
+
controlPv "BL24I-MO-IOC-13:GP7"
|
|
184
184
|
font "arial-medium-r-18.0"
|
|
185
185
|
fontAlign "right"
|
|
186
186
|
fgColor index 25
|
|
@@ -464,7 +464,7 @@ x 145
|
|
|
464
464
|
y 171
|
|
465
465
|
w 110
|
|
466
466
|
h 30
|
|
467
|
-
controlPv "BL24I-MO-IOC-
|
|
467
|
+
controlPv "BL24I-MO-IOC-13:GP8"
|
|
468
468
|
font "arial-medium-r-18.0"
|
|
469
469
|
fontAlign "right"
|
|
470
470
|
fgColor index 25
|
|
@@ -580,7 +580,7 @@ h 144
|
|
|
580
580
|
lineColor index 7
|
|
581
581
|
fill
|
|
582
582
|
fillColor index 7
|
|
583
|
-
visPv "BL24I-MO-IOC-
|
|
583
|
+
visPv "BL24I-MO-IOC-13:GP1"
|
|
584
584
|
visMin "0"
|
|
585
585
|
visMax "2"
|
|
586
586
|
endObjectProperties
|
|
@@ -598,7 +598,7 @@ h 143
|
|
|
598
598
|
lineColor index 7
|
|
599
599
|
fill
|
|
600
600
|
fillColor index 7
|
|
601
|
-
visPv "BL24I-MO-IOC-
|
|
601
|
+
visPv "BL24I-MO-IOC-13:GP1"
|
|
602
602
|
visMin "0"
|
|
603
603
|
visMax "2"
|
|
604
604
|
endObjectProperties
|
|
@@ -618,7 +618,7 @@ fontAlign "center"
|
|
|
618
618
|
fgColor index 14
|
|
619
619
|
bgColor index 0
|
|
620
620
|
useDisplayBg
|
|
621
|
-
visPv "BL24I-MO-IOC-
|
|
621
|
+
visPv "BL24I-MO-IOC-13:GP1"
|
|
622
622
|
visMin "0"
|
|
623
623
|
visMax "2"
|
|
624
624
|
value {
|
|
@@ -648,7 +648,7 @@ botShadowColor index 11
|
|
|
648
648
|
font "arial-medium-r-18.0"
|
|
649
649
|
numCmds 1
|
|
650
650
|
command {
|
|
651
|
-
0 "caput BL24I-
|
|
651
|
+
0 "caput BL24I-MO-IOC-13:PMAC:console \\#5hmz\\#6hmz\\#7hmz"
|
|
652
652
|
}
|
|
653
653
|
endObjectProperties
|
|
654
654
|
|
|
@@ -728,7 +728,7 @@ h 143
|
|
|
728
728
|
lineColor index 7
|
|
729
729
|
fill
|
|
730
730
|
fillColor index 7
|
|
731
|
-
visPv "BL24I-MO-IOC-
|
|
731
|
+
visPv "BL24I-MO-IOC-13:GP1"
|
|
732
732
|
visMin "0"
|
|
733
733
|
visMax "2"
|
|
734
734
|
endObjectProperties
|
|
@@ -748,7 +748,7 @@ fontAlign "center"
|
|
|
748
748
|
fgColor index 14
|
|
749
749
|
bgColor index 0
|
|
750
750
|
useDisplayBg
|
|
751
|
-
visPv "BL24I-MO-IOC-
|
|
751
|
+
visPv "BL24I-MO-IOC-13:GP1"
|
|
752
752
|
visMin "0"
|
|
753
753
|
visMax "2"
|
|
754
754
|
value {
|
|
@@ -792,7 +792,7 @@ x 146
|
|
|
792
792
|
y 209
|
|
793
793
|
w 110
|
|
794
794
|
h 25
|
|
795
|
-
controlPv "BL24I-MO-IOC-
|
|
795
|
+
controlPv "BL24I-MO-IOC-13:GP99"
|
|
796
796
|
font "arial-medium-r-18.0"
|
|
797
797
|
fontAlign "right"
|
|
798
798
|
fgColor index 25
|
|
@@ -4,7 +4,7 @@ major 4
|
|
|
4
4
|
minor 0
|
|
5
5
|
release 1
|
|
6
6
|
x 1205
|
|
7
|
-
y
|
|
7
|
+
y 653
|
|
8
8
|
w 450
|
|
9
9
|
h 180
|
|
10
10
|
font "arial-medium-r-18.0"
|
|
@@ -78,9 +78,9 @@ fgColour index 14
|
|
|
78
78
|
bgColour index 4
|
|
79
79
|
topShadowColour index 1
|
|
80
80
|
botShadowColour index 8
|
|
81
|
-
controlPv "BL24I-MO-IOC-
|
|
81
|
+
controlPv "BL24I-MO-IOC-13:GP101"
|
|
82
82
|
font "arial-medium-r-18.0"
|
|
83
|
-
numItems
|
|
83
|
+
numItems 1
|
|
84
84
|
symbolTag {
|
|
85
85
|
0 "Eiger"
|
|
86
86
|
}
|